#!/usr/local/bin/python3
from pipeline import experiment, reso, meso, fuse, stack, pupil, treadmill, posture
from stimulus import stimulus
from stimline import tune
# # Scans
# for priority in range(120, -130, -10): # highest to lowest priority
# next_scans = (experiment.AutoProcessing() & 'priority > {}'.format(priority) &
# (experiment.Scan() & 'scan_ts > "2019-01-01 00:00:00"'))
next_scans = (experiment.AutoProcessing() &
(experiment.Scan() & 'scan_ts > "2019-01-01 00:00:00"'))
# stimulus
stimulus.Sync().populate(next_scans, reserve_jobs=True, suppress_errors=True)
stimulus.BehaviorSync().populate(next_scans,
reserve_jobs=True,
suppress_errors=True)
# treadmill, pupil, posture
treadmill.Treadmill().populate(next_scans,
reserve_jobs=True,
suppress_errors=True)
pupil.Eye().populate(next_scans, reserve_jobs=True, suppress_errors=True)
pupil.FittedPupil().populate(next_scans,
reserve_jobs=True,
suppress_errors=True)
posture.Posture().populate(next_scans, reserve_jobs=True, suppress_errors=True)
# stack
stack.StackInfo().populate(stack.CorrectionChannel(),
from pipeline import experiment
import time
try:
from stimline import tune
except ImportError:
print('Warning: Skipping pixelwise maps. Install stimulus (cajal/stimuli) and stimline'
' (cajal/stimulus-pipeline).')
POPULATE_TUNE = False
else: # import worked fine
POPULATE_TUNE = True
while True:
# Scans
for priority in range(120, -130, -10): # highest to lowest priority
next_scans = experiment.AutoProcessing() & 'priority > {}'.format(priority)
# treadmill
treadmill.Sync().populate(next_scans, reserve_jobs=True, suppress_errors=True)
treadmill.Treadmill().populate(next_scans, reserve_jobs=True, suppress_errors=True)
# pupil
pupil.Eye().populate(next_scans, reserve_jobs=True, suppress_errors=True)
# posture
posture.Posture().populate(next_scans, reserve_jobs=True, suppress_errors=True)
# Stacks
stack.StackInfo().populate(stack.CorrectionChannel(), reserve_jobs=True, suppress_errors=True) #TODO: stackAutoProcessing
stack.Quality().populate(reserve_jobs=True, suppress_errors=True)
stack.RasterCorrection().populate(reserve_jobs=True, suppress_errors=True)
dj.config['database.prefix'] = os.environ.get('DJ_PREFIX', '')
from pipeline import mice, experiment, meso, odor, treadmill
# ---
mice.Mice.proj()
experiment.Session.proj()
experiment.Session.proj() - odor.MesoMatch()
experiment.Scan.proj()
experiment.Scan.proj() - odor.MesoMatch()
experiment.AutoProcessing()
experiment.AutoProcessing() - odor.MesoMatch()
experiment.AutoProcessing.proj() - meso.ScanInfo.proj()
experiment.AutoProcessing.proj() - meso.Quality()
meso.ScanInfo.Field.proj() - meso.CorrectionChannel.proj()
meso.ScanInfo.Field.proj() - meso.RasterCorrection.proj()
meso.ScanInfo.Field.proj() - meso.MotionCorrection.proj()
experiment.AutoProcessing.proj() - meso.Stitch.proj()