def setUp(self):
super().setUp()
settings.CLIENT_CONFIG.is_managed = False
settings.CLIENT_CONFIG.is_offline = True
os.environ[POLYAXON_KEYS_COLLECT_ARTIFACTS] = "false"
os.environ[POLYAXON_KEYS_COLLECT_RESOURCES] = "false"
with patch("polyaxon.tracking.run.Run._set_exit_handler") as exit_mock:
self.run = Run(project="test.test", run_uuid="uid")
assert exit_mock.call_count == 1
def __init__(self, learn, run=None, monitor="auto", mode="auto"):
super().__init__(learn, monitor=monitor, mode=mode)
if monitor is None:
# use default TrackerCallback monitor value
super().__init__(learn, mode=mode)
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
def __init__(self,
tensors,
run=None,
every_n_iter=None,
every_n_secs=None):
super(PolyaxonLoggingTensorHook,
self).__init__(tensors=tensors,
every_n_iter=every_n_iter,
every_n_secs=every_n_secs)
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
def __init__(self,
tensors,
run=None,
every_num_iterations=None,
every_n_secs=None):
super().__init__(
tensors=tensors,
every_num_iterations=every_num_iterations,
every_n_secs=every_n_secs,
)
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
def _run(ctx, name, owner, project_name, description, tags, specification,
log):
docker = DockerOperator()
if not docker.check():
raise PolyaxonException("Docker is required to run this command.")
# Create Build
project = "{}.{}".format(owner, project_name)
build_job = Run(project=project)
specification = CompiledOperationSpecification.apply_operation_contexts(
specification)
content = specification.to_dict(dump=True)
build_job.create(name=name,
description=description,
tags=tags,
content=content)
image = _create_docker_build(build_job, specification, project)
experiment = Run(project=project)
experiment.create(name=name,
tags=tags,
description=description,
content=content)
cmd_args = ["run", "--rm"]
data_paths, bind_mounts = _get_data_bind_mounts(specification.data_refs)
for key, value in _get_env_vars(
project=project,
experiment_id=experiment.experiment_id,
params=specification.params,
data_paths=data_paths,
):
cmd_args += ["-e", "{key}={value}".format(key=key, value=value)]
cmd_args += _get_config_volume()
cmd_args += _get_data_volumes(bind_mounts)
cmd_args += [image]
# Add cmd.run
_, args = specification.container.get_container_command_args()
for arg in args:
cmd_args += arg
try:
print(cmd_args)
docker.execute(cmd_args, stream=True)
except Exception as e:
handle_cli_error(e, message="Could start local run.")
sys.exit(1)
def __init__(self, *args: Any, **kwargs: Any):
try:
from polyaxon.tracking import Run
self.experiment = Run(*args, **kwargs)
except ImportError:
try:
from polyaxon_client.tracking import Experiment
self.experiment = Experiment(*args, **kwargs)
except ImportError:
raise RuntimeError(
"This contrib module requires polyaxon to be installed.\n"
"For Polyaxon v1.x please install it with command: \n pip install polyaxon\n"
"For Polyaxon v0.x please install it with command: \n pip install polyaxon-client"
)
def __init__(self, summary_op=None, steps_per_log=1000, run=None):
self._summary_op = summary_op
self._steps_per_log = steps_per_log
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
n_estimators=n_estimators,
max_features=max_features,
min_samples_leaf=min_samples_leaf,
)
return cross_val_score(classifier, X, y, cv=5)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument('--n_estimators', type=int, default=3)
parser.add_argument('--max_features', type=int, default=3)
parser.add_argument('--min_samples_leaf', type=int, default=80)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='random-forest')
experiment.create(tags=['examples', 'scikit-learn'])
experiment.log_inputs(n_estimators=args.n_estimators,
max_features=args.max_features,
min_samples_leaf=args.min_samples_leaf)
(X, y) = load_data()
# Polyaxon
experiment.log_data_ref(content=X, name='dataset_X')
experiment.log_data_ref(content=y, name='dataset_y')
accuracies = model(X=X,
y=y,
n_estimators=args.n_estimators,
max_features=args.max_features,
'--l1_ratio',
type=float,
default=1.0)
parser.add_argument(
'--max_iter',
type=int,
default=1000)
parser.add_argument(
'--tol',
type=float,
default=0.001
)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='sgd-classifier')
experiment.create(tags=['examples', 'scikit-learn'])
experiment.log_inputs(loss=args.loss,
penalty=args.penalty,
l1_ratio=args.l1_ratio,
max_iter=args.max_iter,
tol=args.tol)
(X, y) = load_data()
# Polyaxon
experiment.log_data_ref(content=X, name='dataset_X')
experiment.log_data_ref(content=y, name='dataset_y')
accuracies = model(X=X,
y=y,
def __init__(self, *args, **kwargs):
self.experiment = kwargs.get("run", Run(*args, **kwargs))
class TestEventsSummaries(BaseTestCase):
def setUp(self):
super().setUp()
settings.CLIENT_CONFIG.is_managed = False
settings.CLIENT_CONFIG.is_offline = True
os.environ[POLYAXON_KEYS_COLLECT_ARTIFACTS] = "false"
os.environ[POLYAXON_KEYS_COLLECT_RESOURCES] = "false"
with patch("polyaxon.tracking.run.Run._set_exit_handler") as exit_mock:
self.run = Run(project="test.test", run_uuid="uid")
assert exit_mock.call_count == 1
def test_metrics_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="metric",
last_check=None,
)
events = V1Events.read(
name="metric_events",
kind="metric",
data=os.path.abspath(
"tests/fixtures/polyboard/metric/metric_events.plx"),
)
assert events.name == "metric_events"
assert summaries == [
V1RunArtifact(
name="metric_events",
kind="metric",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/metric/metric_events.plx",
is_input=False,
)
]
assert last_values == {"metric_events": 0.3}
def test_images_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="image",
last_check=None,
)
events = V1Events.read(
name="image_events",
kind="image",
data=os.path.abspath(
"tests/fixtures/polyboard/image/image_events.plx"),
)
assert events.name == "image_events"
assert summaries == [
V1RunArtifact(
name="image_events",
kind="image",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/image/image_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_histograms_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="histogram",
last_check=None,
)
events = V1Events.read(
name="histogram_events",
kind="histogram",
data=os.path.abspath(
"tests/fixtures/polyboard/histogram/histogram_events.plx"),
)
assert events.name == "histogram_events"
assert summaries == [
V1RunArtifact(
name="histogram_events",
kind="histogram",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/histogram/histogram_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_videos_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="video",
last_check=None,
)
events = V1Events.read(
name="video_events",
kind="video",
data=os.path.abspath(
"tests/fixtures/polyboard/video/video_events.plx"),
)
assert events.name == "video_events"
assert summaries == [
V1RunArtifact(
name="video_events",
kind="video",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/video/video_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_audios_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="audio",
last_check=None,
)
events = V1Events.read(
name="audio_events",
kind="audio",
data=os.path.abspath(
"tests/fixtures/polyboard/audio/audio_events.plx"),
)
assert events.name == "audio_events"
assert summaries == [
V1RunArtifact(
name="audio_events",
kind="audio",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/audio/audio_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_htmls_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="html",
last_check=None,
)
events = V1Events.read(
name="html_events",
kind="html",
data=os.path.abspath(
"tests/fixtures/polyboard/html/html_events.plx"),
)
assert events.name == "html_events"
assert summaries == [
V1RunArtifact(
name="html_events",
kind="html",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/html/html_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_charts_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="chart",
last_check=None,
)
events = V1Events.read(
name="chart_events",
kind="chart",
data=os.path.abspath(
"tests/fixtures/polyboard/chart/chart_events.plx"),
)
assert events.name == "chart_events"
assert summaries == [
V1RunArtifact(
name="chart_events",
kind="chart",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/chart/chart_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_curves_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="curve",
last_check=None,
)
events = V1Events.read(
name="curve_events",
kind="curve",
data=os.path.abspath(
"tests/fixtures/polyboard/curve/curve_events.plx"),
)
assert events.name == "curve_events"
assert summaries == [
V1RunArtifact(
name="curve_events",
kind="curve",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/curve/curve_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_artifacts_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="artifact",
last_check=None,
)
events = V1Events.read(
name="artifact_events",
kind="artifact",
data=os.path.abspath(
"tests/fixtures/polyboard/artifact/artifact_events.plx"),
)
assert events.name == "artifact_events"
assert summaries == [
V1RunArtifact(
name="artifact_events",
kind="artifact",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/artifact/artifact_events.plx",
is_input=False,
)
]
assert last_values == {}
def test_models_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="model",
last_check=None,
)
summaries = {s.name: s for s in summaries}
events = V1Events.read(
name="model_events",
kind="model",
data=os.path.abspath(
"tests/fixtures/polyboard/model/model_events.plx"),
)
assert events.name == "model_events"
assert summaries["model_events"] == V1RunArtifact(
name="model_events",
kind="model",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/model/model_events.plx",
is_input=False,
)
events_without_step = V1Events.read(
name="model_events_without_step",
kind="model",
data=os.path.abspath(
"tests/fixtures/polyboard/model/model_events_without_step.plx"
),
)
assert events_without_step.name == "model_events_without_step"
assert summaries["model_events_without_step"] == V1RunArtifact(
name="model_events_without_step",
kind="model",
connection=None,
summary=events_without_step.get_summary(),
path="tests/fixtures/polyboard/model/model_events_without_step.plx",
is_input=False,
)
assert last_values == {}
def test_dataframes_summaries(self):
summaries, last_values = self.run._sync_events_summaries(
events_path="tests/fixtures/polyboard",
events_kind="dataframe",
last_check=None,
)
events = V1Events.read(
name="dataframe_events",
kind="dataframe",
data=os.path.abspath(
"tests/fixtures/polyboard/dataframe/dataframe_events.plx"),
)
assert events.name == "dataframe_events"
assert summaries == [
V1RunArtifact(
name="dataframe_events",
kind="dataframe",
connection=None,
summary=events.get_summary(),
path="tests/fixtures/polyboard/dataframe/dataframe_events.plx",
is_input=False,
)
]
assert last_values == {}
)
model.fit(X_train, y_train)
pred = model.predict(X_test)
return accuracy_score(pred, y_test)
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--max_depth', type=int, default=3)
parser.add_argument('--num_rounds', type=int, default=10)
parser.add_argument('--min_child_weight', type=int, default=5)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='iris')
experiment.create(tags=['examples', 'xgboost'])
experiment.log_inputs(log_learning_rate=args.log_learning_rate,
max_depth=args.max_depth,
num_rounds=args.num_rounds,
min_child_weight=args.min_child_weight)
iris = load_iris()
X = iris.data
Y = iris.target
X_train, X_test, y_train, y_test = train_test_split(X, Y, test_size=0.2)
# Polyaxon
experiment.log_data_ref(content=X_train, name='x_train')
experiment.log_data_ref(content=y_train, name='y_train')
def __init__(self, learn, run=None, monitor="val_loss", mode="auto"):
super(PolyaxonFastai, self).__init__(learn, monitor=monitor, mode=mode)
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
'--l1_ratio',
type=float,
default=1.0)
parser.add_argument(
'--max_iter',
type=int,
default=1000)
parser.add_argument(
'--tol',
type=float,
default=0.001
)
args = parser.parse_args()
# Polyaxon
experiment = Run()
(X, y) = load_data()
# Polyaxon
experiment.log_data_ref(content=X, name='dataset_X')
experiment.log_data_ref(content=y, name='dataset_y')
accuracies = model(X=X,
y=y,
loss=args.loss,
penalty=args.penalty,
l1_ratio=args.l1_ratio,
max_iter=args.max_iter,
tol=args.tol)
accuracy_mean, accuracy_std = (np.mean(accuracies), np.std(accuracies))
def main(unused_argv):
# Horovod: initialize Horovod.
hvd.init()
# Polyaxon
if hvd.rank() == 0:
experiment = Run()
# Keras automatically creates a cache directory in ~/.keras/datasets for
# storing the downloaded MNIST data. This creates a race
# condition among the workers that share the same filesystem. If the
# directory already exists by the time this worker gets around to creating
# it, ignore the resulting exception and continue.
cache_dir = os.path.join(os.path.expanduser('~'), '.keras', 'datasets')
if not os.path.exists(cache_dir):
try:
os.mkdir(cache_dir)
except OSError as e:
if e.errno == errno.EEXIST and os.path.isdir(cache_dir):
pass
else:
raise
# Download and load MNIST dataset.
(train_data, train_labels), (eval_data, eval_labels) = \
keras.datasets.mnist.load_data('MNIST-data-%d' % hvd.rank())
# Polyaxon
if hvd.rank() == 0:
experiment.log_data_ref(content=train_data, name='x_train')
experiment.log_data_ref(content=train_labels, name='y_train')
experiment.log_data_ref(content=eval_data, name='x_test')
experiment.log_data_ref(content=eval_labels, name='y_test')
# The shape of downloaded data is (-1, 28, 28), hence we need to reshape it
# into (-1, 784) to feed into our network. Also, need to normalize the
# features between 0 and 1.
train_data = np.reshape(train_data, (-1, 784)) / 255.0
eval_data = np.reshape(eval_data, (-1, 784)) / 255.0
# Horovod: pin GPU to be used to process local rank (one GPU per process)
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
config.gpu_options.visible_device_list = str(hvd.local_rank())
# Horovod: save checkpoints only on worker 0 to prevent other workers from
# corrupting them.
model_dir = './mnist_convnet_model' if hvd.rank() == 0 else None
# Create the Estimator
mnist_classifier = tf.estimator.Estimator(
model_fn=cnn_model_fn,
model_dir=model_dir,
config=tf.estimator.RunConfig(session_config=config))
# Set up logging for predictions
# Log the values in the "Softmax" tensor with label "probabilities"
tensors_to_log = {"probabilities": "softmax_tensor"}
logging_hook = tf.train.LoggingTensorHook(tensors=tensors_to_log,
every_n_iter=500)
# Horovod: BroadcastGlobalVariablesHook broadcasts initial variable states from
# rank 0 to all other processes. This is necessary to ensure consistent
# initialization of all workers when training is started with random weights or
# restored from a checkpoint.
bcast_hook = hvd.BroadcastGlobalVariablesHook(0)
# Train the model
train_input_fn = tf.estimator.inputs.numpy_input_fn(x={"x": train_data},
y=train_labels,
batch_size=100,
num_epochs=None,
shuffle=True)
# Horovod: adjust number of steps based on number of GPUs.
mnist_classifier.train(input_fn=train_input_fn,
steps=3000 // hvd.size(),
hooks=[logging_hook, bcast_hook])
# Evaluate the model and print results
eval_input_fn = tf.estimator.inputs.numpy_input_fn(x={"x": eval_data},
y=eval_labels,
num_epochs=1,
shuffle=False)
eval_results = mnist_classifier.evaluate(input_fn=eval_input_fn)
print(eval_results)
# Polyaxon
if hvd.rank() == 0:
experiment.log_metrics(**eval_results)
from keras.layers import Dense, Dropout, Flatten
from keras.layers import Conv2D, MaxPooling2D
from keras import backend as K
import math
import tensorflow as tf
import horovod.keras as hvd
# Polyaxon
from polyaxon.tracking import Run
# Horovod: initialize Horovod.
hvd.init()
# Polyaxon
if hvd.rank() == 0:
experiment = Run()
# Horovod: pin GPU to be used to process local rank (one GPU per process)
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
config.gpu_options.visible_device_list = str(hvd.local_rank())
K.set_session(tf.Session(config=config))
batch_size = 128
num_classes = 10
# Polyaxon
if hvd.rank() == 0:
experiment.log_inputs(batch_size=128, num_classes=10)
# Horovod: adjust number of epochs based on number of GPUs.
epochs = int(math.ceil(12.0 / hvd.size()))
def train(mnist):
#定义输入输出占位
input_x = tf.placeholder(tf.float32, [None,INPUT_SIZE,INPUT_SIZE,1 ], name= "input_x")
input_y = tf.placeholder(tf.float32, [None,OUTPUT_SIZE], name= "input_y")
dropout_keep_prob = tf.placeholder(tf.float32,name = "dropout_keep_prob")
l2_loss = tf.constant(0.0)
print("1 step ok!")
#polyaxon
experiment = Run()
experiment.log_data_ref(content=input_x, name='input_x')
experiment.log_data_ref(content=input_y, name='input_y')
#第一层：卷积层conv1
'''
input : [-1,28,28,1]
filter : [5,5,32]
output : [-1,28,28,32]
'''
with tf.name_scope("conv1"):
w = get_weights([FILTER1_SIZE,FILTER1_SIZE,1,FILTER1_NUM])
b = get_biases([FILTER1_NUM])
with tf.device("/fpga:0"):
conv1_op = tf.nn.conv2d(
input = input_x,
filter = w,
strides = [1,1,1,1],
padding = "SAME",
name = 'conv1_op')
# print("***********************")
re1 = tf.nn.bias_add(conv1_op,b)
with tf.device("/fpga:0"):
conv1 = tf.nn.relu(re1 ,name = "relu")
print("2 step ok!")
#第二层：持化层pooling2
'''
input : [-1,28,28,32]
output : [-1,14,14,32]
'''
with tf.name_scope("pooling2"):
with tf.device("/fpga:0"):
pooling2 = tf.nn.max_pool(
value = conv1,
ksize = [1,2,2,1],
strides = [1,2,2,1],
padding = "SAME",
name = "pooling1")
print("3 step ok!")
#第三层：卷积层conv3
'''
input : [-1,14,14,32]
filter : [5,5,64]
output : [-1,14,14,64]
'''
with tf.name_scope("conv3"):
w = get_weights([FILTER3_SIZE,FILTER3_SIZE,FILTER1_NUM,FILTER3_NUM])
b = get_biases([FILTER3_NUM])
with tf.device("/fpga:0"):
conv3_op = tf.nn.conv2d(
input = pooling2,
filter = w ,
strides = [1,1,1,1],
padding = "SAME",
name = "conv3_op")
re3 = tf.nn.bias_add(conv3_op,b)
with tf.device("/fpga:0"):
conv3 = tf.nn.relu(re3 ,name = "relu")
print("4 step ok!")
#第四层：池化层pooling4
'''
input : [-1,14,14,64]
output : [-1,7,7,64]
'''
with tf.name_scope("pooling4"):
with tf.device("/fpga:0"):
pooling4 = tf.nn.max_pool(
value = conv3,
ksize = [1,2,2,1],
strides = [1,2,2,1],
padding = "SAME",
name = "pooling4")
#池化结果展开
'''
input : [-1,7,7,64]
output : [-1,3136]
'''
pooling4_flat = tf.reshape(pooling4,[-1,FLAT_SIZE])
print("5 step ok!")
#第五层：全连接层fc5
'''
input : [-1,3136]
output : [-1,512]
'''
with tf.name_scope("fc5"):
w = get_weights([FLAT_SIZE,FC5_SIZE])
b = get_biases([FC5_SIZE])
xw_res = tf.nn.xw_plus_b(pooling4_flat,w,b,name= "fc5")
with tf.device("/fpga:0"):
fc5 = tf.nn.relu(xw_res, name = "relu")
fc5_drop = tf.nn.dropout( fc5,dropout_keep_prob)
l2_loss += tf.nn.l2_loss(w) + tf.nn.l2_loss(b)
print("6 step ok!")
#第六层：全连接层（输出）
'''
input : [-1,512]
output : [-1,10]
'''
with tf.name_scope("fc6"):
w = get_weights([FC5_SIZE,OUTPUT_SIZE])
b = get_biases([OUTPUT_SIZE])
y_hat = tf.nn.xw_plus_b(fc5_drop,w,b,name = "y_hat")
l2_loss += tf.nn.l2_loss(w) + tf.nn.l2_loss(b)
print("7 step ok!")
cross_entropy = tf.nn.softmax_cross_entropy_with_logits_v2(logits = y_hat, labels = input_y)
#print("****************")
cross_entropy_mean = tf.reduce_mean(cross_entropy)
loss = cross_entropy_mean + L2NORM_RATE * l2_loss
print("8 step ok!")
correct_predictions = tf.equal(tf.argmax(y_hat,1),tf.argmax(input_y,1))
accuracy = tf.reduce_mean( tf.cast(correct_predictions,tf.float32) )
global_step = tf.Variable(0,trainable=False)
train_op = tf.train.AdamOptimizer(LEARNING_RATE).minimize(loss,global_step = global_step)
print("9 step ok!")
with tf.Session() as sess:
tf.global_variables_initializer().run()
for i in range(TRAIN_STEP):
xs_pre, ys = mnist.train.next_batch(BATCH_SIZE)
xs = np.reshape(xs_pre,[-1,INPUT_SIZE,INPUT_SIZE,1])
feed_dict = {
input_x: xs,
input_y: ys,
dropout_keep_prob : 0.5
}
_, step, train_loss, train_acc = sess.run([train_op, global_step, loss, accuracy],feed_dict = feed_dict)
if i%2 == 0:
print("step:{} ,train loss:{:g}, train_acc:{:g}".format(step,train_loss,train_acc))
experiment.log_metrics(loss=train_loss, accuracy=train_acc)
test_x = np.reshape(mnist.test.images[0:100],[-1,INPUT_SIZE,INPUT_SIZE,1])
test_y = mnist.test.labels[0:100]
feed_test = {
input_x : test_x,
input_y : test_y,
dropout_keep_prob : 1.0
}
test_loss, test_acc, data = sess.run([loss,accuracy,y_hat],feed_dict = feed_test)
# print(data)
# print(test_y[0])
print("After {} training steps, in test dataset, loss is {:g}, acc is {:g}".format(TRAIN_STEP,test_loss,test_acc))
experiment.log_metrics(loss=test_loss, accuracy=test_acc)
parser.add_argument('--pool1_size', type=int, default=2)
parser.add_argument('--conv2_size', type=int, default=5)
parser.add_argument('--conv2_out', type=int, default=64)
parser.add_argument('--conv2_activation', type=str, default='relu')
parser.add_argument('--pool2_size', type=int, default=2)
parser.add_argument('--dropout', type=float, default=0.2)
parser.add_argument('--fc1_size', type=int, default=1024)
parser.add_argument('--fc1_activation', type=str, default='sigmoid')
parser.add_argument('--optimizer', type=str, default='adam')
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--batch_size', type=int, default=100)
parser.add_argument('--epochs', type=int, default=1)
args = parser.parse_args()
# Polyaxon
experiment = Run()
mnist = tf.keras.datasets.mnist
(x_train, y_train), (x_test, y_test) = mnist.load_data()
# Polyaxon
experiment.log_data_ref(content=x_train, name='x_train')
experiment.log_data_ref(content=y_train, name='y_train')
experiment.log_data_ref(content=x_test, name='x_test')
experiment.log_data_ref(content=y_test, name='y_test')
with tf.Session() as sess:
model = create_model(conv1_size=args.conv1_size,
conv1_out=args.conv1_out,
conv1_activation=args.conv1_activation,
def main(_):
with tf.device(
tf.train.replica_device_setter(
worker_device="/job:%s/task:%d/%s" %
(task["type"], task["index"], FLAGS.device),
cluster=cluster)):
worker_device = "/job:%s/task:%d/%s" % (task["type"], task["index"],
FLAGS.device),
logging.info("worker_device: %s", worker_device)
###
### Training
###
#
# read training data
#
# image - 784 (=28 x 28) elements of grey-scaled integer value [0, 1]
# label - digit (0, 1, ..., 9)
train_queue = tf.train.string_input_producer(
[FLAGS.train_file], num_epochs=2
) # data is repeated and it raises OutOfRange when data is over
train_reader = tf.TFRecordReader()
_, train_serialized_exam = train_reader.read(train_queue)
train_exam = tf.parse_single_example(train_serialized_exam,
features={
'image_raw':
tf.FixedLenFeature([],
tf.string),
'label':
tf.FixedLenFeature([],
tf.int64)
})
train_image = tf.decode_raw(train_exam['image_raw'], tf.uint8)
train_image.set_shape([784])
train_image = tf.cast(train_image, tf.float32) * (1. / 255)
train_label = tf.cast(train_exam['label'], tf.int32)
train_batch_image, train_batch_label = tf.train.batch(
[train_image, train_label], batch_size=batch_size)
#polyaxon
experiment = Run()
# Polyaxon
experiment.log_data_ref(content=train_image, name='train_image')
experiment.log_data_ref(content=train_label, name='train_label')
#
# define training graph
#
# define input
plchd_image = tf.placeholder(dtype=tf.float32, shape=(None, 784))
plchd_label = tf.placeholder(dtype=tf.int32, shape=(None))
# define network and inference
# (simple 2 fully connected hidden layer : 784->128->64->10)
with tf.name_scope('hidden1'):
weights = tf.Variable(tf.truncated_normal([784, 128],
stddev=1.0 /
math.sqrt(float(784))),
name='weights')
biases = tf.Variable(tf.zeros([128]), name='biases')
hidden1 = tf.nn.relu(tf.matmul(plchd_image, weights) + biases)
with tf.name_scope('hidden2'):
weights = tf.Variable(tf.truncated_normal([128, 64],
stddev=1.0 /
math.sqrt(float(128))),
name='weights')
biases = tf.Variable(tf.zeros([64]), name='biases')
hidden2 = tf.nn.relu(tf.matmul(hidden1, weights) + biases)
with tf.name_scope('softmax_linear'):
weights = tf.Variable(tf.truncated_normal([64, 10],
stddev=1.0 /
math.sqrt(float(64))),
name='weights')
biases = tf.Variable(tf.zeros([10]), name='biases')
logits = tf.matmul(hidden2, weights) + biases
# define optimization
global_step = tf.train.create_global_step() # start without checkpoint
optimizer = tf.train.GradientDescentOptimizer(learning_rate=0.07)
loss = tf.losses.sparse_softmax_cross_entropy(labels=plchd_label,
logits=logits)
train_op = optimizer.minimize(loss=loss, global_step=global_step)
#
# run session
#
with tf.train.MonitoredTrainingSession(master=server.target,
checkpoint_dir=FLAGS.out_dir,
is_chief=is_chief) as sess:
# when data is over, OutOfRangeError occurs and ends with MonitoredSession
local_step_value = 0
run_metadata = tf.RunMetadata()
array_image, array_label = sess.run(
[train_batch_image, train_batch_label],
run_metadata=run_metadata)
while not sess.should_stop():
feed_dict = {
plchd_image: array_image,
plchd_label: array_label
}
_, global_step_value, loss_value, array_image, array_label = sess.run(
[
train_op, global_step, loss, train_batch_image,
train_batch_label
],
feed_dict=feed_dict)
local_step_value += 1
if local_step_value % 100 == 0: # You can also use tf.train.LoggingTensorHook for output
logging.info("Local Step %d, Global Step %d (Loss: %.2f)",
local_step_value, global_step_value,
loss_value)
# Polyaxon
experiment.log_metrics(step=local_step_value,
loss=loss_value)
print('training finished')
import argparse
import pickle
import os
import numpy as np
from polyaxon.tracking import Run
from sklearn.ensemble import RandomForestClassifier
from sklearn.model_selection import cross_val_score
from my_project.data import load_data
# Polyaxon
experiment = Run()
def model(X, y, n_estimators, max_features, min_samples_leaf):
classifier = RandomForestClassifier(n_estimators=n_estimators,
max_features=max_features,
min_samples_leaf=min_samples_leaf)
return cross_val_score(classifier, X, y, cv=5), classifier
parser = argparse.ArgumentParser()
parser.add_argument('--n_estimators', type=int, default=3)
parser.add_argument('--max_features', type=int, default=3)
parser.add_argument('--min_samples_leaf', type=int, default=80)
args = parser.parse_args()
(X, y) = load_data()
# Polyaxon
# https://polyaxon.com/docs/experimentation/tracking/module/#log_data_ref
def __init__(self, run=None, metrics=None):
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
self.metrics = metrics
metric = mx.metric.Accuracy()
for _, batch in enumerate(data_iter):
data = batch.data[0].as_in_context(context)
label = batch.label[0].as_in_context(context)
output = model(data.astype(args.dtype, copy=False))
metric.update([label], [output])
return metric.get()
# Initialize Horovod
hvd.init()
# Polyaxon
if hvd.rank() == 0:
experiment = Run()
# Horovod: pin context to local rank
context = mx.cpu(hvd.local_rank()) if args.no_cuda else mx.gpu(hvd.local_rank())
num_workers = hvd.size()
# Load training and validation data
train_data, val_data = get_mnist_iterator(hvd.rank())
# Build model
model = conv_nets()
model.cast(args.dtype)
model.hybridize()
# Define hyper parameters
optimizer_params = {'momentum': args.momentum,
return model.evaluate(x_test, y_test)[1]
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--conv1_size', type=int, default=32)
parser.add_argument('--conv2_size', type=int, default=64)
parser.add_argument('--dropout', type=float, default=0.8)
parser.add_argument('--hidden1_size', type=int, default=500)
parser.add_argument('--optimizer', type=str, default='adam')
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--epochs', type=int, default=1)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='mnist')
experiment.create(tags=['keras'])
experiment.log_inputs(conv1_size=args.conv1_size,
conv2_size=args.conv2_size,
dropout=args.dropout,
hidden1_size=args.hidden1_size,
optimizer=args.optimizer,
log_learning_rate=args.log_learning_rate,
epochs=args.epochs)
(x_train, y_train), (x_test, y_test) = mnist.load_data()
# Polyaxon
experiment.log_data_ref(content=x_train, name='x_train')
experiment.log_data_ref(content=y_train, name='y_train')
experiment.log_data_ref(content=x_test, name='x_test')
parser = argparse.ArgumentParser()
parser.add_argument('--conv1_kernel', type=int, default=5)
parser.add_argument('--conv1_filters', type=int, default=10)
parser.add_argument('--conv1_activation', type=str, default='relu')
parser.add_argument('--conv2_kernel', type=int, default=5)
parser.add_argument('--conv2_filters', type=int, default=10)
parser.add_argument('--conv2_activation', type=str, default='relu')
parser.add_argument('--fc1_hidden', type=int, default=10)
parser.add_argument('--fc1_activation', type=str, default='relu')
parser.add_argument('--optimizer', type=str, default='adam')
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--batch_size', type=int, default=100)
parser.add_argument('--epochs', type=int, default=1)
args = parser.parse_args()
experiment = Run(project='mnist')
experiment.create(tags=['examples', 'mxnet'])
experiment.log_inputs(conv1_kernel=args.conv1_kernel,
conv1_filters=args.conv1_filters,
conv1_activation=args.conv1_activation,
conv2_kernel=args.conv1_kernel,
conv2_filters=args.conv1_filters,
conv2_activation=args.conv1_activation,
fc1_hidden=args.fc1_hidden,
fc1_activation=args.fc1_activation,
optimizer=args.optimizer,
log_learning_rate=args.log_learning_rate,
epochs=args.epochs)
logger.info('Downloading data ...')
mnist = mx.test_utils.get_mnist()
def __init__(self, run, filepath, **kwargs):
self.run = run
if settings.CLIENT_CONFIG.is_managed:
self.run = self.run or Run()
super().__init__(filepath, **kwargs)
metavar='N',
help='how many batches to wait before logging training status')
parser.add_argument('--fp16-allreduce',
action='store_true',
default=False,
help='use fp16 compression during allreduce')
args = parser.parse_args()
args.cuda = not args.no_cuda and torch.cuda.is_available()
# Horovod: initialize library.
hvd.init()
torch.manual_seed(args.seed)
# Polyaxon
if hvd.rank() == 0:
experiment = Run()
if args.cuda:
# Horovod: pin GPU to local rank.
torch.cuda.set_device(hvd.local_rank())
torch.cuda.manual_seed(args.seed)
kwargs = {'num_workers': 1, 'pin_memory': True} if args.cuda else {}
train_dataset = \
datasets.MNIST('data-%d' % hvd.rank(), train=True, download=True,
transform=transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307,), (0.3081,))
]))
# Horovod: use DistributedSampler to partition the training data.
def main():
args = parse_args()
experiment = Run()
params = load_values(args.param_file)
if params:
experiment.log_inputs(**params)
metrics = load_values(args.metric_file)
if metrics:
experiment.log_metrics(**metrics)
if args.tag:
experiment.log_tags(args.tag)
for dataset in load_datasets(args.data_file):
experiment.log_data_ref(**dataset)
if args.capture_png:
imgs = discover_png(experiment.get_outputs_path())
for img in imgs:
if isinstance(img, str):
experiment.log_image(img)
elif isinstance(img, SerialImages):
for idx, path in enumerate(img.paths):
experiment.log_image(path, name=img.name, step=idx)
else:
raise NotImplementedError('We should never get here.')
import tensorflow as tf
from polyaxon.tracking import Run
mnist = tf.keras.datasets.mnist
(x_train, y_train), (x_test, y_test) = mnist.load_data()
x_train, x_test = x_train / 255.0, x_test / 255.0
experiment = Run(project='mnist', artifacts_path='/tmp/mnist/')
experiment.create(tags=['examples', 'tensorflow'])
def create_model():
return tf.keras.models.Sequential([
tf.keras.layers.Flatten(input_shape=(28, 28)),
tf.keras.layers.Dense(512, activation='relu'),
tf.keras.layers.Dropout(0.2),
tf.keras.layers.Dense(10, activation='softmax')
])
model = create_model()
model.compile(optimizer='adam',
loss='sparse_categorical_crossentropy',
metrics=['accuracy'])
model.fit(x=x_train,
y=y_train,
epochs=5,
validation_data=(x_test, y_test))
parser.add_argument('--pool1_size', type=int, default=2)
parser.add_argument('--conv2_size', type=int, default=5)
parser.add_argument('--conv2_out', type=int, default=64)
parser.add_argument('--conv2_activation', type=str, default='relu')
parser.add_argument('--pool2_size', type=int, default=2)
parser.add_argument('--dropout', type=float, default=0.2)
parser.add_argument('--fc1_size', type=int, default=1024)
parser.add_argument('--fc1_activation', type=str, default='sigmoid')
parser.add_argument('--optimizer', type=str, default='adam')
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--batch_size', type=int, default=100)
parser.add_argument('--epochs', type=int, default=1)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='mnist', artifacts_path='/tmp/mnist')
experiment.create(tags=['examples', 'tensorflow'])
experiment.log_inputs(conv1_size=args.conv1_size,
conv1_out=args.conv1_out,
conv1_activation=args.conv1_activation,
pool1_size=args.pool1_size,
conv2_size=args.conv2_size,
conv2_out=args.conv2_out,
conv2_activation=args.conv2_activation,
pool2_size=args.pool2_size,
fc1_activation=args.fc1_activation,
fc1_size=args.fc1_size,
optimizer=args.optimizer,
log_learning_rate=args.log_learning_rate,
batch_size=args.batch_size,
dropout=args.dropout,
parser.add_argument('--skip_top',
type=int,
default=30,
help='Top occurring words to skip')
parser.add_argument('--maxlen', type=int, default=100)
parser.add_argument('--batch_size', type=int, default=32)
parser.add_argument('--num_nodes', type=int, default=8)
parser.add_argument('--optimizer', type=str, default='adam')
parser.add_argument('--log_learning_rate', type=int, default=-3)
parser.add_argument('--dropout', type=float, default=0.8)
parser.add_argument('--epochs', type=int, default=1)
parser.add_argument('--seed', type=int, default=234)
args = parser.parse_args()
# Polyaxon
experiment = Run(project='bidirectional-lstm')
experiment.create(tags=['examples', 'keras'])
experiment.log_inputs(max_features=args.max_features,
skip_top=args.skip_top,
maxlen=args.maxlen,
batch_size=args.batch_size,
num_nodes=args.num_nodes,
optimizer=args.optimizer,
log_learning_rate=args.log_learning_rate,
dropout=args.dropout,
epochs=args.epochs,
seed=args.seed)
logger.info('Loading data...')
(x_train, y_train), (x_test,
y_test) = imdb.load_data(num_words=args.max_features,