numCores = 4
gapScore = 0.4
maxDel = 500 # An upper bound on the number of expected deletions. Set to -1 if not wanted.
m1P = 100 # Number of horizontal partitions.
m2P = 100 # Number of vertical partitions.
seq1 = []
seq2 = []
sequences = [[file1, seq1], [file2, seq2]]
f = open(file1, 'r')
for line in f:
lineSplit = line.split(" ")
seq1.append(
ppyClasses.DataPoint(lineSplit[14], int(lineSplit[16]),
int(lineSplit[17])))
f.close()
f = open(file2, 'r')
for line in f:
lineSplit = line.split(" ")
seq2.append(
ppyClasses.DataPoint(lineSplit[14], int(lineSplit[16]),
int(lineSplit[17])))
f.close()
m1 = len(seq1)
m2 = len(seq2)
# Append dummy points to have m1P|m1 and m2P|m2
dummyPoint = ppyClasses.DataPoint('QQ', -1, -1)
maxDel = 300 # An upper bound on the number of expected deletions. Set to -1 if not wanted.
m1P = 100 # Number of horizontal partitions.
m2P = 100 # Number of vertical partitions.
seq1 = []
seq2 = []
sequences = [[file1, seq1], [file2, seq2]]
for seq in sequences:
f = open(path + seq[0], 'r')
for line in f:
# lineSplit = line.split(",")
lineSplit = line.split(" ")
# seq[1].append(ppyClasses.DataPoint(lineSplit[0], int(lineSplit[1]), int(lineSplit[2])))
seq[1].append(ppyClasses.DataPoint(lineSplit[18], int(lineSplit[16]), int(lineSplit[17])))
f.close()
m1 = len(seq1)
m2 = len(seq2)
# Append dummy points to have m1P|m1 and m2P|m2
dummyPoint = ppyClasses.DataPoint('QQ', -1, -1)
while m1 % float(m1P) != 0:
sequences[0][1].append(dummyPoint)
m1 += 1
while m2 % float(m2P) != 0:
sequences[1][1].append(dummyPoint)
m2 += 1
file2 = "Test1-Pat2.txt"
numCores = 4
gapScore = 0.4
maxDel = 500 # An upper bound on the number of expected deletions. Set to -1 if not wanted.
seq1 = []
seq2 = []
sequences = [[file1, seq1], [file2, seq2]]
for seq in sequences:
f = open(path + seq[0], 'r')
for line in f:
lineSplit = line.split(",")
seq[1].append(
ppyClasses.DataPoint(lineSplit[0], int(lineSplit[1]),
int(lineSplit[2])))
f.close()
m1 = len(seq1)
m2 = len(seq2)
# Number of horizontal and vertical partitions.
m1P = 2
m2P = 2
# Append dummy points to have m1P|m1 and m2P|m2
dummyPoint = ppyClasses.DataPoint('QQ', -1, -1)
while m1 % float(m1P) != 0:
sequences[0][1].append(dummyPoint)
m1 += 1
file2 = sys.argv[1]
numCores = 4
gapScore = 0.4
maxDel = 500 # An upper bound on the number of expected deletions. Set to -1 if not wanted.
m1P = 100 # Number of horizontal partitions.
m2P = 100 # Number of vertical partitions.
seq1 = []
seq2 = []
sequences = [[file1, seq1], [file2, seq2]]
f = open(file1, 'r')
for line in f:
lineSplit = line.split(" ")
seq1.append(ppyClasses.DataPoint(lineSplit[14], int(lineSplit[16]), int(lineSplit[17])))
f.close()
f = open(file2, 'r')
for line in f:
lineSplit = line.split(" ")
seq2.append(ppyClasses.DataPoint(lineSplit[14], int(lineSplit[16]), int(lineSplit[17])))
f.close()
m1 = len(seq1)
m2 = len(seq2)
# Append dummy points to have m1P|m1 and m2P|m2
dummyPoint = ppyClasses.DataPoint('QQ', -1, -1)
while m1 % float(m1P) != 0:
sequences[0][1].append(dummyPoint)