def defineCharacteristicsFromFile(self):
self.hardcodedStrings = []
lines = open(self.descriptionFile)
line = lines.readline().strip("\n").strip()
self.name = line
if "|" in self.name:
tokens = self.name.split("|")
self.name = tokens[0]
self.cmdname = tokens[1]
else:
self.cmdname = self.name
self.name = self.name[0].upper() + self.name[1:].lower()
line = lines.readline().strip("\n").strip()
self.undecoratedGroup = line
self.group = SagaGroupNameDecorator.getDecoratedName(self.undecoratedGroup)
while line != "":
line = line.strip("\n").strip()
if line.startswith("Hardcoded"):
self.hardcodedStrings.append(line[len("Harcoded|")+1:])
elif line.startswith("Parameter"):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith("DontResample"):
self.resample = False
elif line.startswith("Extent"): #An extent parameter that wraps 4 SAGA numerical parameters
self.extentParamNames = line[6:].strip().split(" ")
self.addParameter(ParameterExtent(self.OUTPUT_EXTENT, "Output extent", "0,1,0,1"))
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip("\n").strip()
lines.close()
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.name = line
if '|' in self.name:
tokens = self.name.split('|')
self.name = tokens[0]
self.cmdname = tokens[1]
else:
self.cmdname = self.name
self.name = self.name[0].upper() + self.name[1:].lower()
line = lines.readline().strip('\n').strip()
self.undecoratedGroup = line
self.group = SagaGroupNameDecorator.getDecoratedName(
self.undecoratedGroup)
while line != '':
line = line.strip('\n').strip()
if line.startswith('Hardcoded'):
self.hardcodedStrings.append(line[len('Harcoded|') + 1:])
elif line.startswith('Parameter'):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith('AllowUnmatching'):
self.allowUnmatchingGridExtents = True
elif line.startswith('Extent'):
# An extent parameter that wraps 4 SAGA numerical parameters
self.extentParamNames = line[6:].strip().split(' ')
self.addParameter(
ParameterExtent(self.OUTPUT_EXTENT, 'Output extent',
'0,1,0,1'))
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip('\n').strip()
lines.close()
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.name = line
if '|' in self.name:
tokens = self.name.split('|')
self.name = tokens[0]
self.cmdname = tokens[1]
else:
self.cmdname = self.name
self.name = self.name[0].upper() + self.name[1:].lower()
line = lines.readline().strip('\n').strip()
self.undecoratedGroup = line
self.group = SagaGroupNameDecorator.getDecoratedName(
self.undecoratedGroup)
while line != '':
line = line.strip('\n').strip()
if line.startswith('Hardcoded'):
self.hardcodedStrings.append(line[len('Harcoded|') + 1:])
elif line.startswith('Parameter'):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith('AllowUnmatching'):
self.allowUnmatchingGridExtents = True
elif line.startswith('Extent'):
# An extent parameter that wraps 4 SAGA numerical parameters
self.extentParamNames = line[6:].strip().split(' ')
self.addParameter(ParameterExtent(self.OUTPUT_EXTENT,
'Output extent', '0,1,0,1'))
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip('\n').strip()
lines.close()
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip("\n").strip()
self.appkey = line
line = lines.readline().strip("\n").strip()
self.cliName = line
line = lines.readline().strip("\n").strip()
self.name = line
line = lines.readline().strip("\n").strip()
self.group = line
while line != "":
try:
line = line.strip("\n").strip()
if line.startswith("Parameter"):
param = ParameterFactory.getFromString(line)
# Hack for initializing the elevation parameters from Processing configuration
if param.name == "-elev.dem.path" or param.name == "-elev.dem":
param.default = OTBUtils.otbSRTMPath()
elif param.name == "-elev.dem.geoid" or param.name == "-elev.geoid":
param.default = OTBUtils.otbGeoidPath()
self.addParameter(param)
elif line.startswith("*Parameter"):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
elif line.startswith("Extent"):
self.addParameter(ParameterExtent(self.REGION_OF_INTEREST, "Region of interest", "0,1,0,1"))
self.hasROI = True
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip("\n").strip()
except Exception,e:
ProcessingLog.addToLog(ProcessingLog.LOG_ERROR, "Could not open OTB algorithm: " + self.descriptionFile + "\n" + line)
raise e
def defineCharacteristicsFromFile(self):
self.hardcodedStrings = []
lines = open(self.descriptionFile)
line = lines.readline().strip("\n").strip()
self.name = line
if "|" in self.name:
tokens = self.name.split("|")
self.name = tokens[0]
self.cmdname = tokens[1]
else:
self.cmdname = self.name
self.name = self.name[0].upper() + self.name[1:].lower()
line = lines.readline().strip("\n").strip()
self.undecoratedGroup = line
self.group = SagaGroupNameDecorator.getDecoratedName(
self.undecoratedGroup)
while line != "":
line = line.strip("\n").strip()
if line.startswith("Hardcoded"):
self.hardcodedStrings.append(line[len("Harcoded|") + 1:])
elif line.startswith("Parameter"):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith("DontResample"):
self.resample = False
elif line.startswith(
"Extent"
): #An extent parameter that wraps 4 SAGA numerical parameters
self.extentParamNames = line[6:].strip().split(" ")
self.addParameter(
ParameterExtent(self.OUTPUT_EXTENT, "Output extent",
"0,1,0,1"))
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip("\n").strip()
lines.close()
def processDescriptionParameterLine(self, line):
try:
if line.startswith("Parameter"):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith("*Parameter"):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
except Exception:
raise WrongScriptException("Could not load script:" + self.descriptionFile + ".\n Problem with line \"" + line + "\"")
def processDescriptionParameterLine(self, line):
try:
if line.startswith('Parameter'):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith('*Parameter'):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
except Exception:
raise WrongScriptException(
'Could not load script:' + self.descriptionFile
or '' + '.\n Problem with line "' + line + '"')
def processDescriptionParameterLine(self, line):
try:
if line.startswith('Parameter'):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith('*Parameter'):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
except Exception:
raise WrongScriptException('Could not load script:'
+ self.descriptionFile or ''
+ '.\n Problem with line "' + line + '"'
)
def processDescriptionParameterLine(self, line):
try:
if line.startswith("Parameter"):
self.addParameter(ParameterFactory.getFromString(line))
elif line.startswith("*Parameter"):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
except Exception:
raise WrongScriptException("Could not load script:" +
self.descriptionFile +
".\n Problem with line \"" + line +
"\"")
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip("\n").strip()
self.name = line
line = lines.readline().strip("\n").strip()
self.cmdName = line
line = lines.readline().strip("\n").strip()
self.group = line
while line != "":
try:
line = line.strip("\n").strip()
if line.startswith("Parameter"):
param = ParameterFactory.getFromString(line)
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip("\n").strip()
except Exception, e:
ProcessingLog.addToLog(ProcessingLog.LOG_ERROR, "Could not load TauDEM algorithm: " + self.descriptionFile + "\n" + line)
raise e
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.grassName = line
line = lines.readline().strip('\n').strip()
self.name = line
line = lines.readline().strip('\n').strip()
self.group = line
hasRasterOutput = False
hasVectorInput = False
vectorOutputs = 0
while line != '':
try:
line = line.strip('\n').strip()
if line.startswith('Parameter'):
parameter = ParameterFactory.getFromString(line)
self.addParameter(parameter)
if isinstance(parameter, ParameterVector):
hasVectorInput = True
if isinstance(parameter, ParameterMultipleInput) \
and parameter.datatype < 3:
hasVectorInput = True
elif line.startswith('*Parameter'):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
output = OutputFactory.getFromString(line)
self.addOutput(output)
if isinstance(output, OutputRaster):
hasRasterOutput = True
elif isinstance(output, OutputVector):
vectorOutputs += 1
line = lines.readline().strip('\n').strip()
except Exception, e:
ProcessingLog.addToLog(
ProcessingLog.LOG_ERROR,
'Could not open GRASS GIS 7 algorithm: ' +
self.descriptionFile + '\n' + line)
raise e
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.appkey = line
line = lines.readline().strip('\n').strip()
self.cliName = line
line = lines.readline().strip('\n').strip()
self.name = line
line = lines.readline().strip('\n').strip()
self.group = line
while line != '':
try:
line = line.strip('\n').strip()
if line.startswith('Parameter'):
param = ParameterFactory.getFromString(line)
# Hack for initializing the elevation parameters
# from Processing configuration
if param.name == '-elev.dem.path' or param.name \
== '-elev.dem':
param.default = OTBUtils.otbSRTMPath()
elif param.name == '-elev.dem.geoid' or param.name \
== '-elev.geoid':
param.default = OTBUtils.otbGeoidPath()
self.addParameter(param)
elif line.startswith('*Parameter'):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
elif line.startswith('Extent'):
self.addParameter(ParameterExtent(self.REGION_OF_INTEREST,
'Region of interest', '0,1,0,1'))
self.hasROI = True
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip('\n').strip()
except Exception, e:
ProcessingLog.addToLog(ProcessingLog.LOG_ERROR,
'Could not open OTB algorithm: '
+ self.descriptionFile + '\n' + line)
raise e
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.grassName = line
line = lines.readline().strip('\n').strip()
self.name = line
line = lines.readline().strip('\n').strip()
self.group = line
hasRasterOutput = False
hasVectorInput = False
vectorOutputs = 0
while line != '':
try:
line = line.strip('\n').strip()
if line.startswith('Parameter'):
parameter = ParameterFactory.getFromString(line)
self.addParameter(parameter)
if isinstance(parameter, ParameterVector):
hasVectorInput = True
if isinstance(parameter, ParameterMultipleInput) \
and parameter.datatype < 3:
hasVectorInput = True
elif line.startswith('*Parameter'):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
else:
output = OutputFactory.getFromString(line)
self.addOutput(output)
if isinstance(output, OutputRaster):
hasRasterOutput = True
elif isinstance(output, OutputVector):
vectorOutputs += 1
line = lines.readline().strip('\n').strip()
except Exception, e:
ProcessingLog.addToLog(ProcessingLog.LOG_ERROR,
'Could not open GRASS algorithm: '
+ self.descriptionFile + '\n' + line)
raise e
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip("\n").strip()
self.appkey = line
line = lines.readline().strip("\n").strip()
self.cliName = line
line = lines.readline().strip("\n").strip()
self.name = line
line = lines.readline().strip("\n").strip()
self.group = line
while line != "":
try:
line = line.strip("\n").strip()
if line.startswith("Parameter"):
param = ParameterFactory.getFromString(line)
# Hack for initializing the elevation parameters from Processing configuration
if param.name == "-elev.dem.path" or param.name == "-elev.dem":
param.default = OTBUtils.otbSRTMPath()
elif param.name == "-elev.dem.geoid" or param.name == "-elev.geoid":
param.default = OTBUtils.otbGeoidPath()
self.addParameter(param)
elif line.startswith("*Parameter"):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
elif line.startswith("Extent"):
self.addParameter(
ParameterExtent(self.REGION_OF_INTEREST,
"Region of interest", "0,1,0,1"))
self.hasROI = True
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip("\n").strip()
except Exception, e:
ProcessingLog.addToLog(
ProcessingLog.LOG_ERROR, "Could not open OTB algorithm: " +
self.descriptionFile + "\n" + line)
raise e
def defineCharacteristicsFromFile(self):
lines = open(self.descriptionFile)
line = lines.readline().strip('\n').strip()
self.name = line
line = lines.readline().strip('\n').strip()
self.cmdName = line
line = lines.readline().strip('\n').strip()
self.group = line
while line != '':
try:
line = line.strip('\n').strip()
if line.startswith('Parameter'):
param = ParameterFactory.getFromString(line)
self.addParameter(param)
else:
self.addOutput(OutputFactory.getFromString(line))
line = lines.readline().strip('\n').strip()
except Exception, e:
ProcessingLog.addToLog(
ProcessingLog.LOG_ERROR,
'Could not load TauDEM algorithm: ' +
self.descriptionFile + '\n' + line)
raise e
class OTBAlgorithm(GeoAlgorithm):
REGION_OF_INTEREST = "ROI"
def __init__(self, descriptionfile):
GeoAlgorithm.__init__(self)
self.roiFile = None
self.descriptionFile = descriptionfile
self.defineCharacteristicsFromFile()
self.numExportedLayers = 0
self.hasROI = None
def __str__(self):
return ("Algo : " + self.name + " from app : " + self.cliName +
" in : " + self.group)
def getCopy(self):
newone = OTBAlgorithm(self.descriptionFile)
newone.provider = self.provider
return newone
def getIcon(self):
return PyQt4.QtGui.QIcon(
os.path.dirname(__file__) + "/../../images/otb.png")
def help(self):
folder = os.path.join(OTBUtils.otbDescriptionPath(), 'doc')
helpfile = os.path.join(str(folder), self.appkey + ".html")
if os.path.exists(helpfile):
return False, helpfile
else:
raise WrongHelpFileException(
"Could not find help file for this algorithm. \nIf you have it put it in: \n"
+ str(folder))
def adapt_list_to_string(self, c_list):
a_list = c_list[1:]
if a_list[0] in ["ParameterVector", "ParameterMultipleInput"]:
if c_list[0] == "ParameterType_InputImageList":
a_list[3] = 3
elif c_list[0] == "ParameterType_InputFilenameList":
a_list[3] = 4
else:
a_list[3] = -1
a_list[1] = "-%s" % a_list[1]
def mystr(par):
if type(par) == type([]):
return ";".join(par)
return str(par)
b_list = map(mystr, a_list)
res = "|".join(b_list)
return res
def get_list_from_node(self, myet):
all_params = []
for parameter in myet.iter('parameter'):
rebuild = []
par_type = parameter.find('parameter_type').text
key = parameter.find('key').text
name = parameter.find('name').text
source_par_type = parameter.find(
'parameter_type').attrib['source_parameter_type']
rebuild.append(source_par_type)
rebuild.append(par_type)
rebuild.append(key)
rebuild.append(name)
for each in parameter[4:]:
if not each.tag in ["hidden"]:
if len(list(each)) == 0:
rebuild.append(each.text)
else:
rebuild.append(
[item.text for item in each.iter('choice')])
all_params.append(rebuild)
return all_params
def defineCharacteristicsFromFile(self):
content = open(self.descriptionFile).read()
dom_model = ET.fromstring(content)
self.appkey = dom_model.find('key').text
self.cliName = dom_model.find('exec').text
self.name = dom_model.find('longname').text
self.group = dom_model.find('group').text
#ProcessingLog.addToLog(ProcessingLog.LOG_INFO, "Reading parameters for %s" % self.appkey)
rebu = None
the_result = None
try:
rebu = self.get_list_from_node(dom_model)
the_result = map(self.adapt_list_to_string, rebu)
except Exception, e:
ProcessingLog.addToLog(
ProcessingLog.LOG_ERROR, "Could not open OTB algorithm: " +
self.descriptionFile + "\n" + traceback.format_exc())
raise e
for line in the_result:
try:
if line.startswith("Parameter"):
param = ParameterFactory.getFromString(line)
# Hack for initializing the elevation parameters from Processing configuration
if param.name == "-elev.dem.path" or param.name == "-elev.dem" or "elev.dem" in param.name:
param.default = OTBUtils.otbSRTMPath()
elif param.name == "-elev.dem.geoid" or param.name == "-elev.geoid" or "elev.geoid" in param.name:
param.default = OTBUtils.otbGeoidPath()
self.addParameter(param)
elif line.startswith("*Parameter"):
param = ParameterFactory.getFromString(line[1:])
param.isAdvanced = True
self.addParameter(param)
elif line.startswith("Extent"):
self.addParameter(
ParameterExtent(self.REGION_OF_INTEREST,
"Region of interest", "0,1,0,1"))
self.hasROI = True
else:
self.addOutput(OutputFactory.getFromString(line))
except Exception, e:
ProcessingLog.addToLog(
ProcessingLog.LOG_ERROR, "Could not open OTB algorithm: " +
self.descriptionFile + "\n" + line)
raise e