def getProjectId(self, sessiondata):
try:
projectdata = project.ProjectData()
except project.NotConnectedError, e:
self.logger.warning(
'Failed to associate the grid to a project: %s' % e)
return None
def __init__(self, id, session, managerlocation, **kwargs):
self.grids = Grids(self)
self.insertion = None
node.Node.__init__(self, id, session, managerlocation, **kwargs)
targethandler.TargetWaitHandler.__init__(self)
self.instrument = instrument.Proxy(self.objectservice, self.session)
self.presetsclient = presets.PresetsClient(self)
self.abortevent = threading.Event()
calibrationclients = {
'image shift': calibrationclient.ImageShiftCalibrationClient,
'stage position': calibrationclient.StageCalibrationClient,
'modeled stage position':
calibrationclient.ModeledStageCalibrationClient,
'image beam shift':
calibrationclient.ImageBeamShiftCalibrationClient,
}
self.calibrationclients = {}
for i, clientclass in calibrationclients.items():
self.calibrationclients[i] = clientclass(self)
self.projectdata = None
try:
self.projectdata = project.ProjectData()
except Exception, e:
self.logger.warning(
'Failed to connect to the project database: %s' % e)
def getGridLocations(self, traylabel):
try:
gridboxid = self.gridtrayids[traylabel]
except KeyError:
raise ValueError('unknown tray label')
try:
projectdata = project.ProjectData()
except project.NotConnectedError, e:
self.logger.error('Failed to get grid locations: %s' % e)
return None
def traysFromDB(self):
# if label is same, kinda screwed
self.gridtrayids = {}
self.gridtraylabels = {}
try:
projectdata = project.ProjectData()
gridboxes = projectdata.getGridBoxes()
for i in gridboxes.getall():
self.gridtrayids[i['label']] = i['gridboxId']
self.gridtraylabels[i['gridboxId']] = i['label']
except Exception, e:
self.logger.error('Failed to connect to the project database: %s' % e)
def __init__(self, id, session, managerlocation, **kwargs):
self.loopstop = threading.Event()
self.loopstop.set()
node.Node.__init__(self, id, session, managerlocation, **kwargs)
self.addEventInput(event.MakeTargetListEvent, self.setGrid)
self.lowdosemode = None
self.defocus = None
try:
self.projectdata = project.ProjectData()
except:
self.projectdata = None
self.gridmapping = {}
self.gridbox = None
self.grid = None
self.gridlabel = None
self.insertion = None
self.emgrid = None
self.instrument = instrument.Proxy(self.objectservice, self.session,
self.panel)
self.dosecal = calibrationclient.DoseCalibrationClient(self)
self.manualchecklock = threading.Lock()
self.maskradius = 1.0
self.focexptime = 100.0
self.man_power = None
self.man_image = None
self.powmin = 0
self.powmax = 1e10
self.manualplayer = player.Player(callback=self.onManualPlayer)
self.comment = ''
self.published_images = []
self.viewstatus = None
self.start()
def getGridLabels(self, gridlist):
try:
projectdata = project.ProjectData()
except project.NotConnectedError, e:
self.logger.error('Failed to get grid labels: %s' % e)
return None
def publishEMGridData(self,gridid):
try:
projectdata = project.ProjectData()
except project.NotConnectedError, e:
self.logger.error('Failed to get grid labels: %s' % e)
return None
def getGridID(self, gridboxid, gridnumber):
try:
projectdata = project.ProjectData()
except project.NotConnectedError, e:
self.logger.error('Failed to find grid information: %s' % e)
return None