def test_random_sparse_gene_strategy(self):
expected = [({'gene_1', 'gene_2'}, {'gene_3', 'gene_4'}),
({'gene_1', 'gene_3'}, {'gene_2', 'gene_4'})]
strategy = randomsparse.GeneDeletionStrategy(self._mm, self._assoc)
essential, deleted = randomsparse.random_sparse(strategy,
self._prob,
self._obj_reaction,
flux_threshold=100)
self.assertTrue((essential, deleted) in expected)
def test_random_sparse_reaction_strategy(self):
expected = [({'rxn_1', 'rxn_6', 'ex_A', 'rxn_2',
'rxn_4'}, {'rxn_3', 'rxn_5'}),
({'rxn_1', 'rxn_6', 'ex_A', 'rxn_3',
'rxn_5'}, {'rxn_2', 'rxn_4'})]
strategy = randomsparse.ReactionDeletionStrategy(self._mm)
essential, deleted = randomsparse.random_sparse(strategy,
self._prob,
self._obj_reaction,
flux_threshold=100)
self.assertTrue((essential, deleted) in expected)
def test_random_sparse_gene_strategy(self):
expected = [
({'gene_1', 'gene_2'}, {'gene_3', 'gene_4'}),
({'gene_1', 'gene_3'}, {'gene_2', 'gene_4'})
]
strategy = randomsparse.GeneDeletionStrategy(
self._mm, self._assoc)
essential, deleted = randomsparse.random_sparse(
strategy,
self._prob,
self._obj_reaction,
flux_threshold=100)
self.assertTrue((essential, deleted) in expected)
def test_random_sparse_reaction_strategy(self):
expected = [
({'rxn_1', 'rxn_6', 'ex_A', 'rxn_2', 'rxn_4'}, {'rxn_3', 'rxn_5'}),
({'rxn_1', 'rxn_6', 'ex_A', 'rxn_3', 'rxn_5'}, {'rxn_2', 'rxn_4'})
]
strategy = randomsparse.ReactionDeletionStrategy(self._mm)
essential, deleted = randomsparse.random_sparse(
strategy,
self._prob,
self._obj_reaction,
flux_threshold=100)
self.assertTrue((essential, deleted) in expected)