def resample_time_axis(self):
from ptsa.data.filters.ResampleFilter import ResampleFilter
rs_time_axis = None # resampled time axis
if self.resamplerate > 0:
rs_time_filter = ResampleFilter(resamplerate=self.resamplerate)
rs_time_filter.set_input(self.time_series[0, 0, :])
time_series_resampled = rs_time_filter.filter()
rs_time_axis = time_series_resampled['time']
else:
rs_time_axis = self.time_series['time']
return rs_time_axis, self.time_series['time']
def resample_time_axis(self):
from ptsa.data.filters.ResampleFilter import ResampleFilter
rs_time_axis = None # resampled time axis
if self.resamplerate > 0:
rs_time_filter = ResampleFilter(resamplerate=self.resamplerate)
rs_time_filter.set_input(self.time_series[0, 0, :])
time_series_resampled = rs_time_filter.filter()
rs_time_axis = time_series_resampled['time']
else:
rs_time_axis = self.time_series['time']
return rs_time_axis, self.time_series['time']
def test_eeg_resample(self):
# old readers
events = self.read_ptsa_events()
# in case fancy indexing looses Eventness of events we need to create Events object explicitely
if not isinstance(events, Events):
events = Events(events)
base_events = self.read_base_events()
eegs = events.get_data(channels=['002', '003'],
start_time=0.0,
end_time=1.6,
buffer_time=1.0,
eoffset='eegoffset',
keep_buffer=True,
eoffset_in_time=False,
verbose=True)
# filtering
eegs_resampled = eegs.resampled(50.0)
# New style reading
from ptsa.data.experimental.TimeSeriesEEGReader import TimeSeriesEEGReader
time_series_reader = TimeSeriesEEGReader(events=base_events,
start_time=0.0,
end_time=1.6,
buffer_time=1.0,
keep_buffer=True)
time_series_reader.read(channels=['002', '003'])
base_eegs = time_series_reader.get_output()
from ptsa.data.filters.ResampleFilter import ResampleFilter
resample_filter = ResampleFilter(time_series=base_eegs,
resamplerate=50.0)
base_eegs_resampled = resample_filter.filter()
# testing
assert_array_equal(eegs_resampled, base_eegs_resampled.data)
def test_wavelets_resample(self):
eegs = self.eegs[:, :, :-1]
base_eegs = self.base_eegs
wf = MorletWaveletFilter(time_series=base_eegs,
freqs=np.logspace(np.log10(3), np.log10(180), 8),
output='power',
frequency_dim_pos=0,
)
pow_wavelet, phase_wavelet = wf.filter()
resample_filter = ResampleFilter(time_series=pow_wavelet, resamplerate=100.0)
pow_wavelet_resampled = resample_filter.filter()
print pow_wavelet_resampled
pow_wavelet_resampled_direct = pow_wavelet.resampled(resampled_rate=100.0)
print pow_wavelet_resampled_direct
def test_eeg_resample(self):
# # orig ptsa returns extra stime point that's why eegs[:,:,:-1]
eegs = self.eegs[:, :, :-1]
# filtering
eegs_resampled = eegs.resampled(100.0)
# -------------------TimeSeriesX
base_eegs = self.base_eegs
resample_filter = ResampleFilter(time_series=base_eegs, resamplerate=100.0)
base_eegs_resampled = resample_filter.filter()
base_eegs_resampled_direct = base_eegs.resampled(resampled_rate=100.0)
# -------------- testing
assert_array_equal(eegs_resampled, base_eegs_resampled.data)
assert_array_equal(eegs_resampled, base_eegs_resampled_direct.data)
base_eegs_resampled_direct_0_0 = base_eegs[0,0].resampled(resampled_rate=100.0)
def test_eeg_resample(self):
# # orig ptsa returns extra stime point that's why eegs[:,:,:-1]
eegs = self.eegs[:, :, :-1]
# filtering
eegs_resampled = eegs.resampled(100.0)
# -------------------TimeSeriesX
base_eegs = self.base_eegs
resample_filter = ResampleFilter(time_series=base_eegs, resamplerate=100.0)
base_eegs_resampled = resample_filter.filter()
base_eegs_resampled_direct = base_eegs.resampled(resampled_rate=100.0)
# -------------- testing
assert_array_equal(eegs_resampled, base_eegs_resampled.data)
assert_array_equal(eegs_resampled, base_eegs_resampled_direct.data)
base_eegs_resampled_direct_0_0 = base_eegs[0,0].resampled(resampled_rate=100.0)
def test_eeg_resample(self):
# old readers
events = self.read_ptsa_events()
# in case fancy indexing looses Eventness of events we need to create Events object explicitely
if not isinstance(events, Events):
events = Events(events)
base_events = self.read_base_events()
eegs = events.get_data(channels=['002', '003'], start_time=0.0, end_time=1.6,
buffer_time=1.0, eoffset='eegoffset', keep_buffer=True,
eoffset_in_time=False, verbose=True)
# filtering
eegs_resampled = eegs.resampled(50.0)
# New style reading
from ptsa.data.experimental.TimeSeriesEEGReader import TimeSeriesEEGReader
time_series_reader = TimeSeriesEEGReader(events=base_events, start_time=0.0,
end_time=1.6, buffer_time=1.0, keep_buffer=True)
time_series_reader.read(channels=['002', '003'])
base_eegs = time_series_reader.get_output()
from ptsa.data.filters.ResampleFilter import ResampleFilter
resample_filter = ResampleFilter(time_series=base_eegs, resamplerate=50.0)
base_eegs_resampled = resample_filter.filter()
# testing
assert_array_equal(eegs_resampled, base_eegs_resampled.data)
def test_wavelets_resample(self):
eegs = self.eegs[:, :, :-1]
base_eegs = self.base_eegs
wf = MorletWaveletFilter(
timeseries=base_eegs,
freqs=np.logspace(np.log10(3), np.log10(180), 8),
output='power',
frequency_dim_pos=0,
)
pow_wavelet, phase_wavelet = wf.filter()
resample_filter = ResampleFilter(time_series=pow_wavelet,
resamplerate=100.0)
pow_wavelet_resampled = resample_filter.filter()
print(pow_wavelet_resampled)
pow_wavelet_resampled_direct = pow_wavelet.resampled(
resampled_rate=100.0)
print(pow_wavelet_resampled_direct)