def show(identifier):
"""Display the JSON for the single item in the database.
The identifier may be a PMID, DOI, email, API key, label, ISSN, ISSN-L,
ORCID, or IUID of the document.
"""
db = utils.get_db()
for designname, viewname, operation in [
("publication", "pmid", _asis),
("publication", "doi", _asis),
("account", "email", _asis),
("account", "api_key", _asis),
("label", "normalized_value", _normalized),
("journal", "issn", _asis),
("journal", "issn_l", _asis),
("researcher", "orcid", _asis),
("blacklist", "doi", _asis),
("blacklist", "pmid", _asis),
]:
try:
doc = utils.get_doc(db, designname, viewname,
operation(identifier))
break
except KeyError:
pass
else:
try:
doc = db[identifier]
except couchdb2.NotFoundError:
raise click.ClickException("No such item in the database.")
click.echo(json.dumps(doc, ensure_ascii=False, indent=2))
def select_orcid(self, orcid):
"Select publications by researcher ORCID."
try:
researcher = utils.get_doc(self.db, "researcher", "orcid", orcid)
iuid = researcher["_id"]
except KeyError:
iuid = "-"
self._select("publication", "researcher", key=iuid)
def get_doc(self, designname, viewname, key):
"""Get the document with the given id, or from the given view.
Raise KeyError if not found.
"""
return utils.get_doc(self.db, designname, viewname, key)
def get_doi(db, doi):
"Get an existing publication for the DOI."
try:
return utils.get_doc(db, doi, viewname='publication/doi')
except KeyError:
return None
def get_pmid(db, pmid):
"Get an existing publication for the PMID."
try:
return utils.get_doc(db, pmid, viewname='publication/pmid')
except KeyError:
return None