def test_with_tocken(self):
auth = Auth(token=generate_token())
# If the request is sent successfully, then I expect a response to
# be returned.
self.assertIsInstance(auth.__str__(), str)
self.assertFalse(auth.is_expired())
def test_login(self):
# Call the service, which will send a request to the server.
auth = Auth(user='******', password='******')
# If the request is sent successfully, then I expect a response to
# be returned.
self.assertIsInstance(auth.__str__(), str)
self.assertFalse(auth.is_expired())
def test_expired(self):
self.mock_get.return_value = Mock()
self.mock_get.return_value.text = generate_token(
now=self.now-10000)
self.mock_get.return_value.status_code = 200
# Call the service, which will send a request to the server.
auth = Auth(user='******', password='******')
self.assertIsInstance(auth.__str__(), str)
self.assertTrue(auth.is_expired())
def setUp(self):
self.auth = Auth(token=generate_token())
with open(os.path.join(data_path, "sample2.json")) as handle:
self.data = json.load(handle)
self.sample = Sample(self.auth, data=self.data)
def setUp(self):
self.auth = Auth(token=generate_token())
with open(os.path.join(data_path, "team.json")) as handle:
data = json.load(handle)
self.team = Team(self.auth, data=data)
def test_get_durations(self):
self.mock_get.return_value = Mock()
self.mock_get.return_value.text = generate_token(
now=self.now-3300)
self.mock_get.return_value.status_code = 200
# Call the service, which will send a request to the server.
auth = Auth(user='******', password='******')
# get duration
duration = auth.get_duration()
# get remaining seconds
seconds = int(duration.total_seconds())
self.assertAlmostEqual(seconds, 300, delta=10)
def setUp(self):
self.auth = Auth(token=generate_token())
with open(os.path.join(data_path, "root.json")) as handle:
data = json.load(handle)
self.mock_get.return_value = Mock()
self.mock_get.return_value.json.return_value = data
self.mock_get.return_value.status_code = 200
# get a root object
self.root = Root(self.auth)
def setUp(self):
self.auth = Auth(token=generate_token())
self.user = User(self.auth)
self.data = {
"userName": "******",
"email": "*****@*****.**",
"userReference": "usr-f1801430-51e1-4718-8fca-778887087bad",
"_links": {
"self": {
"href":
"https://explore.api.aai.ebi.ac.uk/users/usr-"
"f1801430-51e1-4718-8fca-778887087bad"
}
}
}
def setUp(self):
self.auth = Auth(token=generate_token())
with open(os.path.join(data_path, "newSubmission.json")) as handle:
data = json.load(handle)
self.submission = Submission(self.auth, data=data)
with open(os.path.join(data_path, "contents.json")) as handle:
self.content = json.load(handle)
# defining samples
self.sample1 = {
'alias': 'animal_1',
'title': 'animal_title',
'releaseDate': '2018-07-13',
'taxonId': 9940,
'attributes': {
'material': [{
'value':
'organism',
'terms': [{
'url':
'http://purl.obolibrary.org/obo/OBI_0100026'
}]
}],
'project': [{
'value': 'test'
}]
},
'sampleRelationships': []
}
self.sample2 = {
'alias':
'sample_1',
'title':
'sample_title',
'releaseDate':
'2018-07-13',
'taxonId':
9940,
'description':
'a description',
'attributes': {
'material': [{
'value':
'specimen from organism',
'terms': [{
'url':
'http://purl.obolibrary.org/obo/OBI_0001479'
}]
}],
'project': [{
'value': 'test'
}]
},
'sampleRelationships': [{
'alias': 'animal_1',
'relationshipNature': 'derived from'
}]
}
def setUp(self):
self.auth = Auth(token=generate_token())
self.domain = Domain(self.auth)
def test_get_tocken(self):
# Call the service, which will send a request to the server.
auth = Auth(user='******', password='******')
token = auth.token
self.assertIsInstance(token, str)