def getSessionMeta(self):
# SessionMeta = {'IDs':ScanIds, 'Types':ScanTypes, 'Series':ScanSeries, 'Quality':ScanQualty, 'XNATID':ScanXnatId }
global getHCP
getHCP.Session = str(self.sessionsListWidget.currentItem().text())
# getHCP.Session = str(self.sessionsComboBox.currentText())
SessionMeta = getHCP.getSessionMeta()
# self.typeTextEdit.setText('\n'.join(SessionMeta.get('Types')))
# self.seriesTextEdit.setText('\n'.join(SessionMeta.get('Series')))
# self.qualityTextEdit.setText('\n'.join(SessionMeta.get('Quality')))
Types = SessionMeta.get('Types')
Series = SessionMeta.get('Series')
Quality = SessionMeta.get('Quality')
# self.sessionMetaTableWidget.clearContents()
# self.sessionMetaTableWidget.clear()
self.sessionMetaTableWidget.clearSpans()
self.sessionMetaTableWidget.setRowCount(0)
self.sessionMetaTableWidget.setHorizontalHeaderItem(0, QtGui.QTableWidgetItem('Types'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(1, QtGui.QTableWidgetItem('Series'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(2, QtGui.QTableWidgetItem('Quality'))
for i in xrange(0, len(Types)):
self.sessionMetaTableWidget.removeRow(i)
self.sessionMetaTableWidget.insertRow(i)
self.sessionMetaTableWidget.setItem(i, 0, QtGui.QTableWidgetItem(Types[i]))
self.sessionMetaTableWidget.setItem(i, 1, QtGui.QTableWidgetItem(Series[i]))
self.sessionMetaTableWidget.setItem(i, 2, QtGui.QTableWidgetItem(Quality[i]))
def getSessionMeta(self):
# SessionMeta = {'IDs':ScanIds, 'Types':ScanTypes, 'Series':ScanSeries, 'Quality':ScanQualty, 'XNATID':ScanXnatId }
global getHCP
getHCP.Session = str(self.sessionsListWidget.currentItem().text())
# getHCP.Session = str(self.sessionsComboBox.currentText())
SessionMeta = getHCP.getSessionMeta()
# self.typeTextEdit.setText('\n'.join(SessionMeta.get('Types')))
# self.seriesTextEdit.setText('\n'.join(SessionMeta.get('Series')))
# self.qualityTextEdit.setText('\n'.join(SessionMeta.get('Quality')))
Types = SessionMeta.get('Types')
Series = SessionMeta.get('Series')
Quality = SessionMeta.get('Quality')
# self.sessionMetaTableWidget.clearContents()
# self.sessionMetaTableWidget.clear()
self.sessionMetaTableWidget.clearSpans()
self.sessionMetaTableWidget.setRowCount(0)
self.sessionMetaTableWidget.setHorizontalHeaderItem(
0, QtGui.QTableWidgetItem('Types'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(
1, QtGui.QTableWidgetItem('Series'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(
2, QtGui.QTableWidgetItem('Quality'))
for i in xrange(0, len(Types)):
self.sessionMetaTableWidget.removeRow(i)
self.sessionMetaTableWidget.insertRow(i)
self.sessionMetaTableWidget.setItem(
i, 0, QtGui.QTableWidgetItem(Types[i]))
self.sessionMetaTableWidget.setItem(
i, 1, QtGui.QTableWidgetItem(Series[i]))
self.sessionMetaTableWidget.setItem(
i, 2, QtGui.QTableWidgetItem(Quality[i]))
else: PipelineSubString = None
UsableList = ['good', 'excellent', 'usable', 'undetermined']
linIdx = 0
for h in xrange(0, len(SubjectsList)):
getHCP.Subject = SubjectsList[h]
SubjectSessions = getHCP.getSubjectSessions()
SubjectMetaData = getHCP.getSubjectMeta()
# find correct session...
for i in xrange(0, len(SubjectSessions.get('Sessions'))):
getHCP.Session = SubjectSessions.get('Sessions')[i]
sessionMeta = getHCP.getSessionMeta()
if (FunctSeries != None) and (FunctSeries in sessionMeta.get('Series')):
break
else:
try:
getHCP.Session = SubjectSessions.get('Sessions')[SubjectSessions.get('Types').index(PipelineSubString[0])]
except:
break
sessionMeta = getHCP.getSessionMeta()
seriesList = sessionMeta.get('Series')
typeList = sessionMeta.get('Types')
idList = sessionMeta.get('IDs')
qualityList = sessionMeta.get('Quality')
# build the subject specific functional lists...
# Looper...
#unique sorted....
#100307,103414,103515,103818,105115,110411,111312,113619,114924,115320,116120,117122,118730,118932,119833,120212,123117,124422,125525,128632,129028,130013,133827,133928,134324,135932,136833,137128,138231,139637,140420,142828,143325,144226,149337,149539,150423,151223,151627,156637,158035,161731,162329,163432,167743,169343,172332,175439,177746,182739,182840,185139,191437,192439,192540,193239,194140,195647,196144,197550,199150,199251,200614,201111,205119,205725,209733,210617,212318,214019,214221,214423,217429,221319,249947,293748,298051,304020,307127,329440,397760,414229,448347,485757,499566,528446,530635,552544,559053,579665,581349,585862,598568,627549,638049,645551,654754,665254,672756,677968,685058,688569,702133,729557,732243,734045,748258,753251,788876,792564,826353,856766,857263,859671,861456,865363,872158,877168,885975,887373,889579,894673,896778,896879,901139,917255,932554,937160,984472,
#===============================================================================
SubjectList = list()
SubjectResource = list()
Subjects = Subjects.split(',')
SuccessBool = list()
#Subjects = ['174437']
for i in xrange(0, len(Subjects)):
print Subjects[i]
getHCP.Subject = Subjects[i]
getHCP.Session = '%s_3T' % getHCP.Subject
subjectResources = getHCP.getSubjectResources()
subjectSessionMeta = getHCP.getSessionMeta()
subjectSeries = subjectSessionMeta.get('Series')
subjectType = subjectSessionMeta.get('Types')
FunctionalList = list()
for j in xrange(0, len(subjectSessionMeta.get('Types'))):
if (subjectSessionMeta.get('Types')[j] == 'tfMRI') or (subjectSessionMeta.get('Types')[j] == 'rfMRI'):
FunctionalList.append(subjectSessionMeta.get('Series')[j])
if ('404 Error' in subjectResources):
pass
else:
# Looper...
#unique sorted....
#100307,103414,103515,103818,105115,110411,111312,113619,114924,115320,116120,117122,118730,118932,119833,120212,123117,124422,125525,128632,129028,130013,133827,133928,134324,135932,136833,137128,138231,139637,140420,142828,143325,144226,149337,149539,150423,151223,151627,156637,158035,161731,162329,163432,167743,169343,172332,175439,177746,182739,182840,185139,191437,192439,192540,193239,194140,195647,196144,197550,199150,199251,200614,201111,205119,205725,209733,210617,212318,214019,214221,214423,217429,221319,249947,293748,298051,304020,307127,329440,397760,414229,448347,485757,499566,528446,530635,552544,559053,579665,581349,585862,598568,627549,638049,645551,654754,665254,672756,677968,685058,688569,702133,729557,732243,734045,748258,753251,788876,792564,826353,856766,857263,859671,861456,865363,872158,877168,885975,887373,889579,894673,896778,896879,901139,917255,932554,937160,984472,
#===============================================================================
SubjectList = list()
SubjectResource = list()
Subjects = Subjects.split(',')
SuccessBool = list()
#Subjects = ['174437']
for i in xrange(0, len(Subjects)):
print Subjects[i]
getHCP.Subject = Subjects[i]
getHCP.Session = '%s_3T' % getHCP.Subject
subjectResources = getHCP.getSubjectResources()
subjectSessionMeta = getHCP.getSessionMeta()
subjectSeries = subjectSessionMeta.get('Series')
subjectType = subjectSessionMeta.get('Types')
FunctionalList = list()
for j in xrange(0, len(subjectSessionMeta.get('Types'))):
if (subjectSessionMeta.get('Types')[j]
== 'tfMRI') or (subjectSessionMeta.get('Types')[j] == 'rfMRI'):
FunctionalList.append(subjectSessionMeta.get('Series')[j])
if ('404 Error' in subjectResources):
pass
else:
subjectResources = subjectResources.get('Names')
SubjectListTmp = list()
SubjectResourceTmp = list()
# getSessionId
# getSessionMeta
# getSessionQuality
# getSubjectResourceMeta
# getSubjectResourcesMeta
# getSubjects
# getSubjectSessions
# getSubjectsSessions
# getURLString
#==============================================================================
Projects = getHCP.getProjects()
getHCP.Subject = getHCP.Subjects[0]
getHCP.SubjectSessions = getHCP.getSubjectSessions()
getHCP.Session = getHCP.SubjectSessions.get('Sessions')[0]
getHCP.SessionMeta = getHCP.getSessionMeta()
ScanParms = getHCP.getScanParms()
ScanMeta = getHCP.getScanMeta()
print ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')]
writeHCP.writeFileFromURL(getHCP, ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')])
if (getHCP.Server.find('intradb') != -1):
AssessorIDs = getHCP.getAssessorIDs( )
AssessorFileURIList = getHCP.getAssessorOutputFile( AssessorIDs )
print getHCP.getProjects()
print getHCP.SessionId, getHCP.getSessionId()