def setUp(self):
p = '../data/hop.txt'
with open(p, 'r') as rfile:
# lines=filetolist(fp)
# lines = fileiter(fp)
hops = [eval(li) for li in fileiter(rfile)]
# hops = [eval(line) for line in fp if line.strip() and not line.strip().startswith('#')]
self.gen = parse_hops(hops)
def setUp(self):
p = '../data/hop.txt'
with open(p, 'r') as rfile:
# lines=filetolist(fp)
# lines = fileiter(fp)
hops = [eval(li) for li in fileiter(rfile)]
# hops = [eval(line) for line in fp if line.strip() and not line.strip().startswith('#')]
self.gen = parse_hops(hops)
def setUp(self):
hop_txt = '''#('Ar40:H1:10, Ar39:AX, Ar36:CDD', 3, 1)
#('Ar40:L2, Ar39:CDD', 3, 1)
#('Ar38:CDD', 3, 1)
#('Ar37:CDD', 3, 1)
('Ar40:H1, Ar36:CDD', 2, 1)
('bs:39.5:H1', 45, 2)
('Ar39:CDD', 2, 1)'''
lines = hop_txt.split('\n')
hops = [eval(li) for li in lines if not li.startswith('#')]
# hops = [eval(line) for line in fp if line.strip() and not line.strip().startswith('#')]
self.gen = parse_hops(hops)
def setUp(self):
hop_txt = '''#('Ar40:H1:10, Ar39:AX, Ar36:CDD', 3, 1)
#('Ar40:L2, Ar39:CDD', 3, 1)
#('Ar38:CDD', 3, 1)
#('Ar37:CDD', 3, 1)
('Ar40:H1, Ar36:CDD', 2, 1)
('bs:39.5:H1', 45, 2)
('Ar39:CDD', 2, 1)'''
lines = hop_txt.split('\n')
hops = [eval(li) for li in lines if not li.startswith('#')]
# hops = [eval(line) for line in fp if line.strip() and not line.strip().startswith('#')]
self.gen = parse_hops(hops)
def build_peak_hop_tables(self, gn, hops):
dm = self.data_manager
with dm.open_file(self._current_data_frame):
dm.new_group(gn)
for iso, det, is_baseline in parse_hops(hops, ret='iso,det,is_baseline'):
if is_baseline:
continue
# self._save_isotopes.append((iso, det, gn))
isogrp = dm.new_group(iso, parent='/{}'.format(gn))
_t = dm.new_table(isogrp, det)
self.debug('add group {} table {}'.format(isogrp, det))
def build_peak_hop_tables(self, grpname, hops):
"""
construct the table structure for a peak hop
hops needs to be a str parsable by ``parse_hops``
:param grpname: str
:param hops: str
"""
dm = self.data_manager
with dm.open_file(self._current_data_frame):
dm.new_group(grpname)
for iso, det, is_baseline in parse_hops(hops, ret='iso,det,is_baseline'):
if is_baseline:
continue
isogrp = dm.new_group(iso, parent='/{}'.format(grpname))
dm.new_table(isogrp, det)
self.debug('add group {} table {}'.format(isogrp, det))
def build_peak_hop_tables(self, grpname, hops):
"""
construct the table structure for a peak hop
hops needs to be a str parsable by ``parse_hops``
:param grpname: str
:param hops: str
"""
dm = self.data_manager
with dm.open_file(self._current_data_frame):
dm.new_group(grpname)
for iso, det, is_baseline in parse_hops(hops,
ret='iso,det,is_baseline'):
if is_baseline:
continue
isogrp = dm.new_group(iso, parent='/{}'.format(grpname))
dm.new_table(isogrp, det)
self.debug('add group {} table {}'.format(isogrp, det))
