def set_isotope_detector(self, det, add=False):
det, name = det.name, det.isotope
# print 'setting isotope detector {} {}'.format(name, det)
# print self.pairs()
# name = None
# if iso:
# name = iso
# if not isinstance(det, str):
# name, det = det.isotope, det.name
#
# name = '{}{}'.format(det.isotope, det.name)
if name in self.isotopes:
iso = self.isotopes.pop(name)
if add:
if iso.detector != det:
nn = '{}{}'.format(iso.name, iso.detector)
self.isotopes[nn] = iso
iso = Isotope(name, det)
name = '{}{}'.format(name, det)
self.isotopes[name] = iso
else:
self.isotopes[name] = iso
else:
iso = Isotope(name, det)
self.isotopes[name] = iso
iso.detector = det
iso.ic_factor = self.get_ic_factor(det)
def set_isotope_detector(self, det, iso=None):
if iso:
name = iso
if not isinstance(det, str):
name, det = det.isotope, det.name
if name in self.isotopes:
iso = self.isotopes[name]
else:
iso = Isotope(name=name)
self.isotopes[name] = iso
iso.detector = det
iso.ic_factor = self.get_ic_factor(det)
def set_isotope_detector(self, det, iso=None):
if iso:
name = iso
if not isinstance(det, str):
name, det = det.isotope, det.name
if name in self.isotopes:
iso = self.isotopes[name]
else:
iso = Isotope(name=name)
self.isotopes[name] = iso
iso.detector = det
iso.ic_factor = self.get_ic_factor(det)
def set_isotope_detector(self, det, add=False):
det, name = det.name, det.isotope
if name in self.isotopes:
iso = self.isotopes.pop(name)
if add:
if iso.detector != det:
nn = '{}{}'.format(iso.name, iso.detector)
self.isotopes[nn] = iso
iso = Isotope(name, det)
name = '{}{}'.format(name, det)
self.isotopes[name] = iso
else:
self.isotopes[name] = iso
else:
iso = Isotope(name, det)
self.isotopes[name] = iso
iso.detector = det
iso.ic_factor = self.get_ic_factor(det)
def _make_per_spec(self, lt):
run_spec = AutomatedRunSpec()
per_spec = PersistenceSpec()
arar_age = ArArAge()
# populate per_spec
per_spec.run_spec = run_spec
per_spec.arar_age = arar_age
# popluate run_spec
run_spec.identifier = lt.labnumber
run_spec.aliquot = lt.aliquot
run_spec.step = lt.step
run_spec.username = '******'
run_spec.uuid = lt.uuid
cp = lt.collection_path
man = H5DataManager()
man.open_file(cp)
# add signal/isotopes
group = man.get_group('signal')
for grp in man.get_groups(group):
isok = grp._v_name
iso = Isotope(name=isok,
fit='linear')
# only handle one detector per isotope
tbl = man.get_tables(grp)[0]
iso.detector = tbl._v_name
xs = array([x['time'] for x in tbl.iterrows()])
ys = array([x['value'] for x in tbl.iterrows()])
iso.xs = xs
iso.ys = ys
arar_age.isotopes[isok] = iso
# add sniffs
group = man.get_group('sniff')
for k, iso in arar_age.isotopes.iteritems():
grp = man.get_group(k, group)
tbl = man.get_tables(grp)[0]
iso.sniff.detector = tbl._v_name
xs = array([x['time'] for x in tbl.iterrows()])
ys = array([x['value'] for x in tbl.iterrows()])
iso.sniff.xs = xs
iso.sniff.ys = ys
# add baselines
group = man.get_group('baseline')
for dettbl in man.get_tables(group):
detname = dettbl._v_name
xs = array([x['time'] for x in dettbl.iterrows()])
ys = array([x['value'] for x in dettbl.iterrows()])
for iso in arar_age.isotopes.itervalues():
if iso.detector == detname:
iso.baseline.xs = xs
iso.baseline.ys = ys
iso.baseline.fit = 'average'
return per_spec
def _make_per_spec(self, lt):
run_spec = AutomatedRunSpec()
per_spec = PersistenceSpec()
arar_age = ArArAge()
# populate per_spec
per_spec.run_spec = run_spec
per_spec.arar_age = arar_age
# popluate run_spec
run_spec.identifier = lt.labnumber
run_spec.aliquot = lt.aliquot
run_spec.step = lt.step
run_spec.username = '******'
run_spec.uuid = lt.uuid
cp = lt.collection_path
man = H5DataManager()
man.open_file(cp)
# add signal/isotopes
group = man.get_group('signal')
for grp in man.get_groups(group):
isok = grp._v_name
iso = Isotope(name=isok, fit='linear')
# only handle one detector per isotope
tbl = man.get_tables(grp)[0]
iso.detector = tbl._v_name
xs = array([x['time'] for x in tbl.iterrows()])
ys = array([x['value'] for x in tbl.iterrows()])
iso.xs = xs
iso.ys = ys
arar_age.isotopes[isok] = iso
# add sniffs
group = man.get_group('sniff')
for k, iso in arar_age.isotopes.iteritems():
grp = man.get_group(k, group)
tbl = man.get_tables(grp)[0]
iso.sniff.detector = tbl._v_name
xs = array([x['time'] for x in tbl.iterrows()])
ys = array([x['value'] for x in tbl.iterrows()])
iso.sniff.xs = xs
iso.sniff.ys = ys
# add baselines
group = man.get_group('baseline')
for dettbl in man.get_tables(group):
detname = dettbl._v_name
xs = array([x['time'] for x in dettbl.iterrows()])
ys = array([x['value'] for x in dettbl.iterrows()])
for iso in arar_age.isotopes.itervalues():
if iso.detector == detname:
iso.baseline.xs = xs
iso.baseline.ys = ys
iso.baseline.fit = 'average'
return per_spec
