Ejemplo n.º 1
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def six_records_vcf_header(six_records_vcf):
    hts_file = hts_internal._hts_open(
        str(six_records_vcf).encode('utf-8'), 'r')
    hdr = bcf_internal._vcf_hdr_read(hts_file)
    yield hdr
    bcf_internal._bcf_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)
Ejemplo n.º 2
0
def header_only_vcf_gz_header(header_only_vcf_gz):
    hts_file = hts_internal._hts_open(
        str(header_only_vcf_gz).encode('utf-8'), 'r')
    hdr = bcf_internal._vcf_hdr_read(hts_file)
    yield hdr
    bcf_internal._bcf_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)
Ejemplo n.º 3
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def six_records_sam_header(six_records_sam):
    hts_file = hts_internal._hts_open(
        str(six_records_sam).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)
Ejemplo n.º 4
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def header_only_sam_gz_header(header_only_sam_gz):
    hts_file = hts_internal._hts_open(
        str(header_only_sam_gz).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)
Ejemplo n.º 5
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def header_only_sam_header(header_only_sam):
    hts_file = hts_internal._hts_open(
        str(header_only_sam).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)
Ejemplo n.º 6
0
def six_records_sam_gz_header(six_records_sam_gz):
    hts_file = hts_internal._hts_open(
        str(six_records_sam_gz).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)