def test_arxiv_to_classic(self):
testfiles = glob.glob(
os.path.join(os.path.dirname(__file__), 'data/arxiv.test/oai*'))
shouldbe = [
f.replace('/oai', '/tagged/oai') + '.tagged' for f in testfiles
]
for f, b in zip(testfiles, shouldbe):
# Python 3 orders the properties dictionary differently
if sys.version_info > (3, ) and os.path.exists(
b.replace('/tagged/oai', '/tagged/python3/oai')):
b = b.replace('/tagged/oai', '/tagged/python3/oai')
if sys.version_info > (3, ):
open_mode = 'rb'
else:
open_mode = 'rU'
with open(f, open_mode) as fp:
serializer = classic.Tagged()
outputfp = StringIO()
parser = arxiv.ArxivParser()
document = parser.parse(fp)
serializer.write(document, outputfp)
testoutput = outputfp.getvalue()
outputfp.close()
if sys.version_info > (3, ):
read_mode = 'r'
else:
read_mode = 'rU'
with open(b, read_mode) as bp:
self.assertEqual(testoutput, bp.read())
class TestATel(unittest.TestCase):
import pytest
def setUp(self):
"Mock atel.ATelParser.urllib.urlopen"
self.patcher = patch('urllib2.urlopen')
self.urlopen_mock = self.patcher.start()
def test_output(self):
parser = atel.ATelParser()
mock_infile = os.path.join(os.path.dirname(__file__), "data/stubdata/input/ATel_rss.xml")
mock_data = open(mock_infile).read()
self.urlopen_mock.return_value = MockResponse(mock_data)
joss_url = 'http://www.astronomerstelegram.org/?adsbiblio'
test_data = parser.parse(joss_url, data_tag='item')
test_outfile = "test_atel.tag"
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/atel.tag")
try:
os.remove(test_outfile)
except Exception, err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_output(self):
parser = hstprop.HSTParser()
mock_infile = os.path.join(os.path.dirname(__file__),
"data/stubdata/input/hstprop.json")
mock_data = json.loads(open(mock_infile).read())
self.get_batch_mock.return_value = mock_data
api_url = 'https://proper.stsci.edu/proper/adsProposalSearch/query_test'
token = 'foo'
test_data = parser.parse(api_url,
api_key=token,
fromDate='2019-01-01',
maxRecords=1,
test=True)
test_outfile = "test_hst.tag"
standard_outfile = os.path.join(
os.path.dirname(__file__), "data/stubdata/serialized/hstprop.tag")
try:
os.remove(test_outfile)
except Exception as err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
class TestProcSci(unittest.TestCase):
def setUp(self):
"Mock procsci.PoSParser.urllib.urlopen"
self.patcher = patch('urllib.urlopen')
self.urlopen_mock = self.patcher.start()
def test_output(self):
parser = procsci.PoSParser()
mock_infile = os.path.join(os.path.dirname(__file__), "data/stubdata/input/pos_sissa_it_299.html")
mock_data = open(mock_infile, 'rU').read()
self.urlopen_mock.return_value = MockResponse(mock_data)
test_data = parser.parse("https://pos.sissa.it/299")
test_outfile = "test_pos.tag"
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/procsci_299.tag")
try:
os.remove(test_outfile)
except Exception, err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
class TestJOSS(unittest.TestCase):
import pytest
def setUp(self):
"Mock joss.JOSSParser.urllib.urlopen"
self.patcher = patch('urllib2.urlopen')
self.urlopen_mock = self.patcher.start()
def test_output(self):
parser = joss.JOSSParser()
mock_infile = os.path.join(os.path.dirname(__file__), "data/stubdata/input/joss_atom.xml")
mock_data = open(mock_infile).read()
self.urlopen_mock.return_value = MockResponse(mock_data)
joss_url = 'https://joss.theoj.org/papers/published.atom'
test_data = parser.parse(joss_url, since='2019-07-10', page=1)
test_outfile = "test_joss.tag"
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/joss.tag")
try:
os.remove(test_outfile)
except Exception, err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_pnas_parser(self):
webdata_file = os.path.join(self.stubdata_dir, 'input',
'pnas_117_36_21873.xml')
with open(webdata_file, open_mode_u) as fw:
webdata = fw.read()
parser = pnas.PNASParser()
output = parser.parse(webdata)
serializer = classic.Tagged()
test_outfile = os.path.join(self.stubdata_dir, 'serialized',
'test_pnas.tag')
if sys.version_info > (3, ):
standard_outfile = os.path.join(self.stubdata_dir, 'serialized',
'python3', 'pnas.tag')
else:
standard_outfile = os.path.join(self.stubdata_dir, 'serialized',
'pnas.tag')
try:
os.remove(test_outfile)
except Exception as err:
pass
with open(test_outfile, 'w') as fo:
serializer.write(output, fo)
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_pnas_parser(self):
mock_infile = os.path.join(self.stubdata_dir, 'input', 'pnas_feedparser.resp')
mock_html_file = os.path.join(self.stubdata_dir, 'input', 'pnas_resp.html')
mock_data = open(mock_infile, open_mode_u).read()
mock_html = open(mock_html_file, open_mode_u).read()
self.requests_mock.return_value.text = MockResponse(mock_html)
feed = json.loads(mock_data)
for _item in feed['entries']:
absURL = _item['link']
parser = pnas.PNASParser()
output = parser.parse(absURL)
serializer = classic.Tagged()
test_outfile = os.path.join(self.stubdata_dir, 'serialized', 'test_pnas.tag')
if sys.version_info > (3,):
standard_outfile = os.path.join(self.stubdata_dir, 'serialized', 'python3', 'pnas.tag')
else:
standard_outfile = os.path.join(self.stubdata_dir, 'serialized', 'pnas.tag')
try:
os.remove(test_outfile)
except Exception as err:
pass
with open(test_outfile, 'w') as fo:
serializer.write(output, fo)
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_arxiv_to_classic(self):
testfiles = glob.glob(os.path.join(os.path.dirname(__file__), 'data/arxiv.test/oai*'))
shouldbe = [f.replace('/oai', '/tagged/oai') + '.tagged' for f in testfiles]
for f, b in zip(testfiles, shouldbe):
with open(f, 'rU') as fp:
serializer = classic.Tagged()
outputfp = cStringIO.StringIO()
parser = arxiv.ArxivParser()
document = parser.parse(fp)
serializer.write(document, outputfp)
testoutput = outputfp.getvalue()
outputfp.close()
with open(b, 'rU') as bp:
self.assertEqual(testoutput, bp.read())
def test_proquest_parser(self):
infilename = 'SAO_NASA_Sep_2020.UNX'
parser = proquest.ProQuestParser(infilename)
parsed = parser.parse()
serializer = classic.Tagged()
standard_outfile = os.path.join(self.outputdir, 'SAO_NASA_Sep_2020.UNX.new')
test_outfile = os.path.join(self.outputdir, 'test_proquest.UNX.new')
try:
os.remove(test_outfile)
except Exception as err:
pass
with open(test_outfile, 'w') as fo:
for rec in parser.results:
serializer.write(rec, fo)
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_output(self):
parser = procsci.PoSParser()
mock_infile = "test_data/stubdata/input/pos_sissa_it_299.html"
mock_data = open(mock_infile, 'rU').read()
self.urlopen_mock.return_value = MockResponse(mock_data)
test_data = parser.parse("https://pos.sissa.it/299")
test_outfile = "test_pos.tag"
standard_outfile = "test_data/stubdata/serialized/procsci_299.tag"
try:
os.remove(test_outfile)
except:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_output(self):
parser = procsci.PoSParser()
mock_infile = os.path.join(os.path.dirname(__file__), "data/stubdata/input/pos_sissa_it_299.html")
mock_data = open(mock_infile, open_mode_u).read()
self.requests_mock.return_value.text = MockResponse(mock_data)
test_data = parser.parse("https://pos.sissa.it/299_test")
test_outfile = "test_pos.tag"
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/procsci_299.tag")
try:
os.remove(test_outfile)
except Exception as err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_proquest_parser(self):
marc_filename = self.stubdata_dir + 'input/' + 'SAO_NASA_Sep_2020.UNX'
oa_filename = marc_filename.replace('.UNX', '_OpenAccessTitles.csv')
marcdata = open(marc_filename).read()
oadata = open(oa_filename).read()
parser = proquest.ProQuestParser(marcdata, oadata)
parsed = parser.parse()
serializer = classic.Tagged()
standard_outfile = os.path.join(self.outputdir,
'SAO_NASA_Sep_2020.UNX.new')
test_outfile = os.path.join(self.outputdir, 'test_proquest.UNX.new')
try:
os.remove(test_outfile)
except Exception as err:
pass
with open(test_outfile, 'w') as fo:
for rec in parser.results:
serializer.write(rec, fo)
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_output(self):
parser = atel.ATelParser()
mock_infile = os.path.join(os.path.dirname(__file__),
"data/stubdata/input/ATel_rss.xml")
mock_data = open(mock_infile).read()
self.urlopen_mock.return_value = MockResponse(mock_data)
atel_url = 'http://www.astronomerstelegram.org/?adsbiblio.test'
test_data = parser.parse(atel_url, data_tag='item')
test_outfile = "test_atel.tag"
standard_outfile = os.path.join(os.path.dirname(__file__),
"data/stubdata/serialized/atel.tag")
try:
os.remove(test_outfile)
except Exception as err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
def test_output(self):
parser = joss.JOSSParser()
mock_infile = os.path.join(os.path.dirname(__file__), "data/stubdata/input/joss_atom.xml")
mock_data = open(mock_infile).read()
self.urlopen_mock.return_value = MockResponse(mock_data)
joss_url = 'https://joss.theoj.org/papers/published.atom.test'
test_data = parser.parse(joss_url, since='2019-07-10', page=1)
test_outfile = "test_joss.tag"
if sys.version_info > (3,):
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/python3/joss.tag")
else:
standard_outfile = os.path.join(os.path.dirname(__file__), "data/stubdata/serialized/joss.tag")
try:
os.remove(test_outfile)
except Exception as err:
pass
for d in test_data:
serializer = classic.Tagged()
outputfp = open(test_outfile, 'a')
serializer.write(d, outputfp)
outputfp.close()
result = filecmp.cmp(test_outfile, standard_outfile)
self.assertEqual(result, True)
os.remove(test_outfile)
