def setUp(self):
TestCase.setUp(self)
geometry = MultiLayers(pure(29))
geometry.add_layer(Material("AuPd", {79: 0.5, 46: 0.5}), 100e-9)
baseops = Options()
baseops.detectors['xray'] = PhotonIntensityDetector((0, 1), (0, 3))
meas = Measurement(baseops)
meas.add_kratio(Ka(29), 0.2470, 0.004)
getter = lambda geometry: geometry.layers[0].thickness_m
setter = lambda geometry, val: setattr(geometry.layers[0], 'thickness_m', val)
param = Parameter(getter, setter, 100e-9, 10e-9, 500e-9)
self.exp = Experiment(geometry, [meas], [param])
class TestMeasurement(TestCase):
def setUp(self):
TestCase.setUp(self)
baseops = Options()
baseops.detectors["xray"] = PhotonIntensityDetector((0, 1), (0, 3))
self.m = Measurement(baseops)
self.m.add_kratio(Ka(29), 0.2470, 0.004)
def tearDown(self):
TestCase.tearDown(self)
def testskeleton(self):
self.assertTrue(True)
def testadd_kratio(self):
standard = Material("U90", {92: 0.9, 49: 0.1})
self.m.add_kratio(La(92), 0.5, standard=standard)
self.assertTrue(self.m.has_kratio(La(92)))
self.assertAlmostEqual(0.5, self.m.get_kratios()[1], 4)
self.m.add_kratio(Ka(13), 0.2, unc=0.125)
self.assertTrue(self.m.has_kratio(Ka(13)))
self.assertAlmostEqual(0.2, self.m.get_kratios()[0], 4)
self.assertRaises(ValueError, self.m.add_kratio, La(92), 0.1)
self.assertRaises(ValueError, self.m.add_kratio, Ka(14), -0.1)
def testremove_kratio(self):
self.m.remove_kratio(Ka(29))
self.assertFalse(self.m.has_kratio(Ka(29)))
self.assertEqual(0, len(self.m.get_kratios()))
def testclear_kratios(self):
self.m.clear_kratios()
self.assertEqual(0, len(self.m.get_kratios()))
def testhas_kratio(self):
self.assertTrue(self.m.has_kratio(Ka(29)))
self.assertFalse(self.m.has_kratio(La(29)))
def testget_kratios(self):
kratios = self.m.get_kratios()
self.assertEqual(1, len(kratios))
self.assertAlmostEqual(0.247, kratios[0], 4)
def testfrom_xml(self):
element = self.m.to_xml()
m = Measurement.from_xml(element)
kratios = m.get_kratios()
self.assertEqual(1, len(kratios))
self.assertAlmostEqual(0.247, kratios[0], 4)
def testto_xml(self):
element = self.m.to_xml()
self.assertEqual(1, len(element.findall("kratio")))
def testcreate_standard_options(self):
list_options = self.m.create_standard_options("std")
self.assertEqual(1, len(list_options))
def testextract_standard_intensities(self):
list_options = self.m.create_standard_options("std")
stdoptions = list_options[0]
intensities = create_intensity_dict(Ka(29), et=(8.0, 0.0))
results = {"xray": PhotonIntensityResult(intensities)}
stdresults = Results(stdoptions, results)
dict_results = {"std+Cu Ka": stdresults}
stdintensities = self.m.extract_standard_intensities("std", dict_results)
self.assertEqual(1, len(stdintensities))
self.assertAlmostEqual(8.0, stdintensities[0], 4)
def testcreate_unknown_options(self):
unkgeometry = Substrate(pure(49))
options = self.m.create_unknown_options("meas", unkgeometry)
self.assertEqual("meas", options.name)
def testextract_unknown_intensities(self):
unkgeometry = Substrate(pure(49))
options = self.m.create_unknown_options("meas", unkgeometry)
intensities = create_intensity_dict(Ka(29), et=(4.0, 0.0))
results = Results(options, {"xray": PhotonIntensityResult(intensities)})
unkintensities = self.m.extract_unknown_intensities(results)
self.assertEqual(1, len(unkintensities))
self.assertAlmostEqual(4.0, unkintensities[0], 4)
from pymontecarlo.reconstruction.experiment import Experiment
from pymontecarlo.reconstruction.measurement import Measurement
from pymontecarlo.reconstruction.parameter import Parameter
from pymontecarlo.reconstruction.reconstructor import Reconstructor
from pymontecarlo.input import Inclusion, pure, Material, Options, ShowersLimit, PhotonIntensityDetector, composition_from_formula
baseops = Options()
baseops.beam.energy_eV = 10e3
baseops.beam.diameter_m = 50e-9
baseops.detectors['xray'] = PhotonIntensityDetector.annular(radians(40.0), radians(5.0))
baseops.limits.add(ShowersLimit(1000))
meas1 = Measurement(baseops)
meas1.add_kratio(Ka(6), 0.5, standard=Material('Fe3C', composition_from_formula('Fe3C')))
def setter1(geometry, val):
geometry.inclusion_material.composition = {26: val, 6: '?'}
param1 = Parameter(setter1, 0.95, 0.0, 1.0)
def setter2(geometry, val):
geometry.inclusion_diameter_m = val
param2 = Parameter(setter2, 200e-9, 150e-9, 250e-9)
inclusion_material = Material('CrC', {26: 0.95, 6: 0.05})
geometry = Inclusion(pure(26), inclusion_material, 200e-9)
exp = Experiment(geometry, [meas1], [param1, param2])
runner = LocalRunner(NISTMonte, '/tmp', nbprocesses=1)
from pymontecarlo.reconstruction.measurement import Measurement
from pymontecarlo.reconstruction.parameter import Parameter
from pymontecarlo.reconstruction.reconstructor import Reconstructor
from pymontecarlo.input import Inclusion, pure, Material, Options, ShowersLimit, PhotonIntensityDetector, composition_from_formula
baseops = Options()
baseops.beam.energy_eV = 10e3
baseops.beam.diameter_m = 50e-9
baseops.detectors['xray'] = PhotonIntensityDetector.annular(
radians(40.0), radians(5.0))
baseops.limits.add(ShowersLimit(1000))
meas1 = Measurement(baseops)
meas1.add_kratio(Ka(6),
0.5,
standard=Material('Fe3C', composition_from_formula('Fe3C')))
def setter1(geometry, val):
geometry.inclusion_material.composition = {26: val, 6: '?'}
param1 = Parameter(setter1, 0.95, 0.0, 1.0)
def setter2(geometry, val):
geometry.inclusion_diameter_m = val
param2 = Parameter(setter2, 200e-9, 150e-9, 250e-9)
class TestMeasurement(TestCase):
def setUp(self):
TestCase.setUp(self)
baseops = Options()
baseops.detectors['xray'] = PhotonIntensityDetector((0, 1), (0, 3))
self.m = Measurement(baseops)
self.m.add_kratio(Ka(29), 0.2470, 0.004)
def tearDown(self):
TestCase.tearDown(self)
def testskeleton(self):
self.assertTrue(True)
def testadd_kratio(self):
standard = Material('U90', {92: 0.9, 49: 0.1})
self.m.add_kratio(La(92), 0.5, standard=standard)
self.assertTrue(self.m.has_kratio(La(92)))
self.assertAlmostEqual(0.5, self.m.get_kratios()[1], 4)
self.m.add_kratio(Ka(13), 0.2, unc=0.125)
self.assertTrue(self.m.has_kratio(Ka(13)))
self.assertAlmostEqual(0.2, self.m.get_kratios()[0], 4)
self.assertRaises(ValueError, self.m.add_kratio, La(92), 0.1)
self.assertRaises(ValueError, self.m.add_kratio, Ka(14), -0.1)
def testremove_kratio(self):
self.m.remove_kratio(Ka(29))
self.assertFalse(self.m.has_kratio(Ka(29)))
self.assertEqual(0, len(self.m.get_kratios()))
def testclear_kratios(self):
self.m.clear_kratios()
self.assertEqual(0, len(self.m.get_kratios()))
def testhas_kratio(self):
self.assertTrue(self.m.has_kratio(Ka(29)))
self.assertFalse(self.m.has_kratio(La(29)))
def testget_kratios(self):
kratios = self.m.get_kratios()
self.assertEqual(1, len(kratios))
self.assertAlmostEqual(0.247, kratios[0], 4)
def testfrom_xml(self):
element = self.m.to_xml()
m = Measurement.from_xml(element)
kratios = m.get_kratios()
self.assertEqual(1, len(kratios))
self.assertAlmostEqual(0.247, kratios[0], 4)
def testto_xml(self):
element = self.m.to_xml()
self.assertEqual(1, len(element.findall('kratio')))
def testcreate_standard_options(self):
list_options = self.m.create_standard_options('std')
self.assertEqual(1, len(list_options))
def testextract_standard_intensities(self):
list_options = self.m.create_standard_options('std')
stdoptions = list_options[0]
intensities = create_intensity_dict(Ka(29), et=(8.0, 0.0))
results = {'xray': PhotonIntensityResult(intensities)}
stdresults = Results(stdoptions, results)
dict_results = {'std+Cu Ka': stdresults}
stdintensities = self.m.extract_standard_intensities('std', dict_results)
self.assertEqual(1, len(stdintensities))
self.assertAlmostEqual(8.0, stdintensities[0], 4)
def testcreate_unknown_options(self):
unkgeometry = Substrate(pure(49))
options = self.m.create_unknown_options('meas', unkgeometry)
self.assertEqual('meas', options.name)
def testextract_unknown_intensities(self):
unkgeometry = Substrate(pure(49))
options = self.m.create_unknown_options('meas', unkgeometry)
intensities = create_intensity_dict(Ka(29), et=(4.0, 0.0))
results = Results(options, {'xray': PhotonIntensityResult(intensities)})
unkintensities = self.m.extract_unknown_intensities(results)
self.assertEqual(1, len(unkintensities))
self.assertAlmostEqual(4.0, unkintensities[0], 4)
