import pypath.input_formats as input_formats
mapList = [
{
"one":
"uniprot-sec",
"two":
"uniprot-pri",
"typ":
"protein",
"src":
"file",
"par":
input_formats.FileMapping(os.path.join(common.ROOT, 'data',
'sec_ac.txt'),
0,
1,
None,
header=0)
}, {
"one":
"trembl",
"two":
"genesymbol",
"typ":
"protein",
"src":
"file",
"par":
input_formats.FileMapping(os.path.join(common.ROOT, 'data',
'trembl3.tab'),
0,
import os
import pypath.common as common
import pypath.input_formats as input_formats
__all__ = ['misc', 'uniprot', 'mirbase', 'basic', 'uniprot_old']
misc = {
('uniprot-sec', 'uniprot-pri'):
input_formats.FileMapping(
id_type_a = 'uniprot-sec',
id_type_b = 'uniprot-pri',
entity_type = 'protein',
input_ = os.path.join(common.ROOT, 'data', 'sec_ac.txt'),
col_a = 0,
col_b = 1,
separator = None,
header = 0,
),
('trembl', 'genesymbol'):
input_formats.FileMapping(
id_type_a = 'trembl',
id_type_b = 'genesymbol',
entity_type = 'protein',
input_ = os.path.join(common.ROOT, 'data', 'trembl3.tab'),
col_a = 0,
col_b = 1,
separator = '\t',
header = 0,
),