def setUp(self):
self.opts = rapi.opts()
self.opts.share_ref_mem = False # for Travis
rapi.init(self.opts)
self.ref = rapi.ref(stuff.MiniRef)
aligner = rapi.aligner(self.opts)
self.batch = rapi.read_batch(2)
reads = stuff.get_mini_ref_seqs()
for row in reads:
self.batch.append(row[0], row[1], row[2], rapi.QENC_SANGER)
self.batch.append(row[0], row[3], row[4], rapi.QENC_SANGER)
aligner.align_reads(self.ref, self.batch)
def setUp(self):
self.opts = rapi.opts()
rapi.init(self.opts)
def setUp(self):
self.opts = rapi.opts()
self.opts.share_ref_mem = False # for Travis
rapi.init(self.opts)
self.ref = rapi.ref(stuff.MiniRef)
def test_shutdown(self):
rapi.init(rapi.opts())
r = rapi.shutdown()
self.assertIsNone(r)
def test_init_opts_none(self):
rapi.init(None)
def test_init(self):
r = rapi.init(rapi.opts())
self.assertIsNone(r)
def setUp(self):
self.opts = rapi.opts()
rapi.init(self.opts)
self.w = rapi.read_batch(2)
