def fn4(i, putOnDiskArraysInJsonSqg=False):
"""Write and then re-read the sqg in a temporary file
"""
sqg, graph = i
tempFile = getTempFile(rootDir=os.getcwd())
self.tempFiles.append(tempFile)
writeJsonSqgFile(sqg, tempFile, putOnDiskArraysInJsonSqg=putOnDiskArraysInJsonSqg)
sqg = readJsonSqgFile(tempFile)
return sqg, graph
def fn():
tempFile = getTempFile(rootDir=os.getcwd())
self.tempFiles.append(tempFile)
return tempFile
def fn3(type):
"""Make a an on disk array list
"""
tempFile = getTempFile(rootDir=os.getcwd())
self.tempFiles.append(tempFile)
return OnDiskArrayList(file=tempFile, type=type)
def setUp(self):
self.tempFile = getTempFile(rootDir=os.getcwd())
self.jsonFiles = ("graph", "mixedGraph", "multiGraph", "breakpointGraph", "adjacencyGraph", "segmentGraph", "phylogeneticTree", "dnaHistoryGraph")