def run_test_bins_fasta(args):
with open(args.rna_bin_file, 'rb') as rb:
bitstring = rb.read()
seq_objects_dict, seq_objects_order = IO.decompress_named_sequences(
bitstring)
full_string = IO.write_named_seq_to_fasta(seq_objects_dict,
seq_objects_order)
with open(args.rna_fastafile, 'r') as rf:
full_fasta_string = rf.read()
full_fasta_string_Us = full_fasta_string.replace('T', 'U').replace(
'ENSU', 'ENST')
assert (len(full_string) == len(full_fasta_string_Us))
assert (full_string == full_fasta_string_Us)
def test_bins_fasta(args):
with open(args.rna_bin_file, 'rb') as rb:
bitstring = rb.read()
seq_objects_dict, seq_objects_order = IO.decompress_named_sequences(
bitstring)
full_string = IO.write_named_seq_to_fasta(seq_objects_dict,
seq_objects_order)
with open(args.rna_fastafile, 'r') as rf:
full_fasta_string = rf.read()
with open("/Users/student/Documents/hani/temp/temp_fasta/1.txt",
'w') as wf:
wf.write(full_string)
full_fasta_string_Us = full_fasta_string.replace('T', 'U').replace(
'ENSU', 'ENST')
assert (len(full_string) == len(full_fasta_string_Us))
#
# print(full_string[0:200])
# print(full_fasta_string_Us[0:200])
assert (full_string == full_fasta_string_Us)
