def run_overscan_sub(metadata, prev_suffix, curr_suffix):
full_obs_list = get_full_obs_list(metadata)
# this is the only time I hard code that this step should happen first
for fn in full_obs_list:
in_fn = '%s%s.fits' % (data_dir, fn)
out_fn = '%s%s.p%s.fits' % (out_dir, fn, curr_suffix)
if skip_done and os.path.isfile(out_fn):
continue
print 'Subtracting Overscan for %s' % in_fn.split('/')[-1]
pywifes.subtract_overscan(in_fn, out_fn, data_hdu=my_data_hdu)
return
def run_overscan_sub(metadata, prev_suffix, curr_suffix):
full_obs_list = get_full_obs_list(metadata)
# this is the only time I hard code that this step should happen first
for fn in full_obs_list:
in_fn = '%s%s.fits' % (data_dir, fn)
out_fn = '%s%s.p%s.fits' % (out_dir, fn, curr_suffix)
if skip_done and os.path.isfile(out_fn):
continue
print 'Subtracting Overscan for %s' % in_fn.split('/')[-1]
pywifes.subtract_overscan(in_fn, out_fn, data_hdu=my_data_hdu)
return
def run_overscan_sub(metadata, prev_suffix, curr_suffix):
full_obs_list = get_full_obs_list(metadata)
# this is the only time I hard code that this step should happen first
for fn in full_obs_list:
# Check if we have the right folder (calibrations might be somewhere else)
change_dir = check_if_obsdates_of_data_dir_and_filename_are_the_same(data_dir, fn)
if change_dir:
in_fn = os.path.join(change_dir, '%s.fits' %fn)
else:
in_fn = os.path.join(data_dir, '%s.fits' %fn)
out_fn = os.path.join(out_dir, '%s.p%s.fits' % (fn, curr_suffix))
if skip_done and os.path.isfile(out_fn):
continue
print('Subtracting Overscan for %s' % in_fn.split('/')[-1])
pywifes.subtract_overscan(in_fn, out_fn, data_hdu=my_data_hdu)
return
#------------------------------------------------------------------------
#------------------------------------------------------------------------
# DEFINE THE PROCESSING STEPS
#------------------------------------------------------
# Subtract overscan
def run_overscan_sub(metadata, prev_suffix, curr_suffix):
full_obs_list = get_full_obs_list(metadata)
# this is the only time I hard code that this step should happen first
for fn in full_obs_list:
in_fn = os.path.join(data_dir, '%s.fits'%fn)
out_fn = os.path.join(out_dir, '%s.p%s.fits'%(fn, curr_suffix))
if skip_done and os.path.isfile(out_fn):
continue
print('Subtracting Overscan for %s' % in_fn.split('/')[-1])
pywifes.subtract_overscan(in_fn, out_fn, data_hdu=my_data_hdu)
return
#------------------------------------------------------
# repair bad pixels!
def run_bpm_repair(metadata, prev_suffix, curr_suffix):
full_obs_list = get_full_obs_list(metadata)
for fn in full_obs_list:
in_fn = os.path.join(out_dir, '%s.p%s.fits' % (fn, prev_suffix))
out_fn = os.path.join(out_dir, '%s.p%s.fits' % (fn, curr_suffix))
if skip_done and os.path.isfile(out_fn):
continue
print('Repairing blue bad pixels for %s' % in_fn.split('/')[-1])
pywifes.repair_blue_bad_pix(in_fn, out_fn, data_hdu=my_data_hdu)
return