def test_get_counts(self):
"""get_counts should gets all the counts for an input file"""
# test the pie charts
img_data = get_counts("Phylum", ['14FC041', '14FC042', '14FC043'], 5,
"/tmp/qiimewebfiles/", 1, self.lines_parsed,
self.prefs, self.color_prefs, 'black', 'white',
'pie', self.generate_image_type, self.plot_width,
self.plot_height, self.bar_width, self.dpi,
'file.txt', 0, 'categorical', False, False)
self.assertEqual(len(img_data), 8)
# test the area charts
img_data = get_counts("Phylum", ['14FC041', '14FC042', '14FC043'], 5,
"/tmp/qiimewebfiles/", 1, self.lines_parsed,
self.prefs, self.color_prefs, 'black', 'white',
'area', self.generate_image_type,
self.plot_width, self.plot_height,
self.bar_width, self.dpi, 'file.txt', 0,
'categorical', False, False)
self.assertEqual(len(img_data), 2)
# test the area charts
img_data = get_counts("Phylum", ['14FC041', '14FC042', '14FC043'], 5,
"/tmp/qiimewebfiles/", 1, self.lines_parsed,
self.prefs, self.color_prefs, 'black', 'white',
'bar', self.generate_image_type, self.plot_width,
self.plot_height, self.bar_width, self.dpi,
'file.txt', 0, 'categorical', False, False)
self.assertEqual(len(img_data), 2)
# clean up files generated
self._paths_to_clean_up = [
"/tmp/qiimewebfiles/charts/" + f
for f in listdir("/tmp/qiimewebfiles/charts")
]
def test_get_counts(self):
"""get_counts should gets all the counts for an input file"""
#test the pie charts
img_data = get_counts("Phylum",['14FC041','14FC042','14FC043'],5,\
"/tmp/qiimewebfiles/",1,self.lines_parsed,\
self.prefs,self.color_prefs,'black','white',\
'pie',self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,\
'file.txt',0,'categorical',False,False)
self.assertEqual(len(img_data), 8)
#test the area charts
img_data = get_counts("Phylum",['14FC041','14FC042','14FC043'],5,\
"/tmp/qiimewebfiles/",1,self.lines_parsed,\
self.prefs,self.color_prefs,'black','white',\
'area',self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,\
'file.txt',0,'categorical',False,False)
self.assertEqual(len(img_data), 2)
#test the area charts
img_data = get_counts("Phylum",['14FC041','14FC042','14FC043'],5,\
"/tmp/qiimewebfiles/",1,self.lines_parsed,\
self.prefs,self.color_prefs,'black','white',\
'bar',self.generate_image_type,self.plot_width,\
self.plot_height,self.bar_width,self.dpi,\
'file.txt',0,'categorical',False,False)
self.assertEqual(len(img_data), 2)
#clean up files generated
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/"+f \
for f in listdir("/tmp/qiimewebfiles/charts")]
def test_get_counts(self):
"""get_counts should gets all the counts for an input file"""
# test the pie charts
img_data = get_counts(
"Phylum",
["14FC041", "14FC042", "14FC043"],
5,
"/tmp/qiimewebfiles/",
1,
self.lines_parsed,
self.prefs,
self.color_prefs,
"black",
"white",
"pie",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
"file.txt",
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 8)
# test the area charts
img_data = get_counts(
"Phylum",
["14FC041", "14FC042", "14FC043"],
5,
"/tmp/qiimewebfiles/",
1,
self.lines_parsed,
self.prefs,
self.color_prefs,
"black",
"white",
"area",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
"file.txt",
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 2)
# test the area charts
img_data = get_counts(
"Phylum",
["14FC041", "14FC042", "14FC043"],
5,
"/tmp/qiimewebfiles/",
1,
self.lines_parsed,
self.prefs,
self.color_prefs,
"black",
"white",
"bar",
self.generate_image_type,
self.plot_width,
self.plot_height,
self.bar_width,
self.dpi,
"file.txt",
0,
"categorical",
False,
)
self.assertEqual(len(img_data), 2)
# clean up files generated
self._paths_to_clean_up = ["/tmp/qiimewebfiles/charts/" + f for f in listdir("/tmp/qiimewebfiles/charts")]