def test_verify_equivalency(self):
""" verifies identical labels, base counts between qual and fasta """
fasta_data = {'seq1':'AATC', 'seq2':'GGAT'}
qual_data = {'seq1':["40", "36", "35", "18"],
'seq2':["39", "18", "22", "23"]}
# Should not raise any errors
verify_equivalency(fasta_data, qual_data)
# Make number of sequences unequal, and should raise error.
fasta_data = {'seq1':'AATC', 'seq2':'GGAT', 'seq3':'ACTG'}
qual_data = {'seq1':["40", "36", "35", "18"],
'seq2':["39", "18", "22", "23"]}
self.assertRaises(ValueError, verify_equivalency, fasta_data, qual_data)
# Should raise error if lens of values different
fasta_data = {'seq1':'AATC', 'seq2':'GGAT'}
qual_data = {'seq1':["50", "40", "36", "35", "18"],
'seq2':["39", "18", "22", "23"]}
self.assertRaises(ValueError, verify_equivalency, fasta_data, qual_data)
def test_verify_equivalency(self):
""" verifies identical labels, base counts between qual and fasta """
fasta_data = {'seq1': 'AATC', 'seq2': 'GGAT'}
qual_data = {
'seq1': ["40", "36", "35", "18"],
'seq2': ["39", "18", "22", "23"]
}
# Should not raise any errors
verify_equivalency(fasta_data, qual_data)
# Make number of sequences unequal, and should raise error.
fasta_data = {'seq1': 'AATC', 'seq2': 'GGAT', 'seq3': 'ACTG'}
qual_data = {
'seq1': ["40", "36", "35", "18"],
'seq2': ["39", "18", "22", "23"]
}
self.assertRaises(ValueError, verify_equivalency, fasta_data,
qual_data)
# Should raise error if lens of values different
fasta_data = {'seq1': 'AATC', 'seq2': 'GGAT'}
qual_data = {
'seq1': ["50", "40", "36", "35", "18"],
'seq2': ["39", "18", "22", "23"]
}
self.assertRaises(ValueError, verify_equivalency, fasta_data,
qual_data)