def test_exists_noexist_return_jobid(self):
"""tests that non-existant job with bad samples returns false"""
exists, jid = Job.exists(
"16S", "Beta Diversity",
{"--otu_table_fp": 1, "--mapping_fp": 27}, Analysis(1),
return_existing=True)
self.assertFalse(exists)
self.assertEqual(jid, None)
def test_exists(self):
# need to insert matching sample data into analysis 2
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample (analysis_id, "
"processed_data_id, sample_id) VALUES (2,1,'SKB8.640193'), "
"(2,1,'SKD8.640184'), (2,1,'SKB7.640196'), (2,1,'SKM9.640192'),"
"(2,1,'SKM4.640180')")
"""tests that existing job returns true"""
self.assertTrue(Job.exists("18S", "Beta Diversity",
{"--otu_table_fp": 1,
"--mapping_fp": 1}, Analysis(1)))
def test_exists(self):
"""tests that existing job returns true"""
# need to insert matching sample data into analysis 2
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample "
"(analysis_id, processed_data_id, sample_id) VALUES "
"(2, 1,'1.SKB8.640193'), (2, 1,'1.SKD8.640184'), "
"(2, 1,'1.SKB7.640196'), (2, 1,'1.SKM9.640192'), "
"(2, 1,'1.SKM4.640180')")
self.assertTrue(Job.exists("18S", "Beta Diversity",
{"--otu_table_fp": 1,
"--mapping_fp": 1}, Analysis(1)))
def test_exists_noexist_options(self):
# need to insert matching sample data into analysis 2
# makes sure failure is because options and not samples
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample (analysis_id, "
"processed_data_id, sample_id) VALUES (2,1,'SKB8.640193'), "
"(2,1,'SKD8.640184'), (2,1,'SKB7.640196'), (2,1,'SKM9.640192'),"
"(2,1,'SKM4.640180')")
"""tests that non-existant job with bad options returns false"""
self.assertFalse(Job.exists("18S", "Beta Diversity",
{"--otu_table_fp": 1,
"--mapping_fp": 27}, Analysis(1)))
def test_exists_noexist_options(self):
"""tests that non-existant job with bad options returns false"""
# need to insert matching sample data into analysis 2
# makes sure failure is because options and not samples
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample "
"(analysis_id, processed_data_id, sample_id) VALUES "
"(2, 1,'1.SKB8.640193'), (2, 1,'1.SKD8.640184'), "
"(2, 1,'1.SKB7.640196'), (2, 1,'1.SKM9.640192'), "
"(2, 1,'1.SKM4.640180')")
self.assertFalse(Job.exists("18S", "Beta Diversity",
{"--otu_table_fp": 1,
"--mapping_fp": 27}, Analysis(1)))
def test_exists_return_jobid(self):
"""tests that existing job returns true"""
# need to insert matching sample data into analysis 2
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample "
"(analysis_id, processed_data_id, sample_id) VALUES "
"(2, 1,'1.SKB8.640193'), (2, 1,'1.SKD8.640184'), "
"(2, 1,'1.SKB7.640196'), (2, 1,'1.SKM9.640192'), "
"(2, 1,'1.SKM4.640180')")
exists, jid = Job.exists("18S", "Beta Diversity",
{"--otu_table_fp": 1, "--mapping_fp": 1},
Analysis(1), return_existing=True)
self.assertTrue(exists)
self.assertEqual(jid, Job(2))
def test_exists_return_jobid(self):
# need to insert matching sample data into analysis 2
self.conn_handler.execute(
"DELETE FROM qiita.analysis_sample WHERE analysis_id = 2")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample (analysis_id, "
"processed_data_id, sample_id) VALUES (2,1,'SKB8.640193'), "
"(2,1,'SKD8.640184'), (2,1,'SKB7.640196'), (2,1,'SKM9.640192'),"
"(2,1,'SKM4.640180')")
"""tests that existing job returns true"""
exists, jid = Job.exists("18S",
"Beta Diversity", {
"--otu_table_fp": 1,
"--mapping_fp": 1
},
Analysis(1),
return_existing=True)
self.assertTrue(exists)
self.assertEqual(jid, Job(2))