def __init__(self, parent=None):
super(InfoWidget, self).__init__()
empty_str = "__________"
beam_group = QGroupBox(" Beam ")
bm_v_layout = QVBoxLayout()
bm_v_layout.addLayout(get_spacebox(130))
xb_label = QLabel(" X (mm) ")
yb_label = QLabel(" Y (mm) ")
bm_label_a_layout = QHBoxLayout()
bm_label_a_layout.addWidget(xb_label)
bm_label_a_layout.addWidget(yb_label)
bm_v_layout.addLayout(bm_label_a_layout)
self.xb_data = QLabel(empty_str)
self.yb_data = QLabel(empty_str)
bm_data_layout = QHBoxLayout()
bm_data_layout.addWidget(self.xb_data)
bm_data_layout.addWidget(self.yb_data)
bm_v_layout.addLayout(bm_data_layout)
bm_v_layout.addWidget(QLabel(" "))
tmp_str = " Wavelength (" + u"\u212B" + ") "
w_lambda_label = QLabel(tmp_str)
bm_v_layout.addWidget(w_lambda_label)
self.w_lambda_data = QLabel(empty_str)
bm_v_layout.addWidget(self.w_lambda_data)
# bm_v_layout.addWidget(QLabel(" "))
# bm_v_layout.addStretch()
beam_group.setLayout(bm_v_layout)
cell_group = QGroupBox(" Crystal ")
cell_v_layout = QVBoxLayout()
cell_v_layout.addLayout(get_spacebox(160))
a_label = QLabel(" a ")
b_label = QLabel(" b ")
c_label = QLabel(" c ")
cell_label_d_layout = QHBoxLayout()
cell_label_d_layout.addWidget(a_label)
cell_label_d_layout.addWidget(b_label)
cell_label_d_layout.addWidget(c_label)
cell_v_layout.addLayout(cell_label_d_layout)
self.a_data = QLabel(empty_str)
self.b_data = QLabel(empty_str)
self.c_data = QLabel(empty_str)
cell_data_layout = QHBoxLayout()
cell_data_layout.addWidget(self.a_data)
cell_data_layout.addWidget(self.b_data)
cell_data_layout.addWidget(self.c_data)
cell_v_layout.addLayout(cell_data_layout)
cell_v_layout.addWidget(QLabel(" "))
left_margin_str = " "
alpha_str = left_margin_str + u"\u03B1"
beta_str = left_margin_str + u"\u03B2"
gamma_str = left_margin_str + u"\u03B3"
alpha_label = QLabel(alpha_str)
beta_label = QLabel(beta_str)
gamma_label = QLabel(gamma_str)
cell_label_a_layout = QHBoxLayout()
cell_label_a_layout.addWidget(alpha_label)
cell_label_a_layout.addWidget(beta_label)
cell_label_a_layout.addWidget(gamma_label)
cell_v_layout.addLayout(cell_label_a_layout)
self.alpha_data = QLabel(empty_str)
self.beta_data = QLabel(empty_str)
self.gamma_data = QLabel(empty_str)
cell_data_layout = QHBoxLayout()
cell_data_layout.addWidget(self.alpha_data)
cell_data_layout.addWidget(self.beta_data)
cell_data_layout.addWidget(self.gamma_data)
cell_v_layout.addLayout(cell_data_layout)
cell_v_layout.addWidget(QLabel(" "))
spgrp_label = QLabel(" Space Group")
self.spgrp_data = QLabel(empty_str)
spgrp_hbox = QHBoxLayout()
spgrp_hbox.addWidget(spgrp_label)
spgrp_hbox.addWidget(self.spgrp_data)
cell_v_layout.addLayout(spgrp_hbox)
r_layout = QVBoxLayout()
r_layout.addWidget(QLabel(" "))
r_layout.addWidget(QLabel(" Orientation (deg) "))
r_label_layout = QHBoxLayout()
r1_label = QLabel(" rot X")
r2_label = QLabel(" rot Y")
r3_label = QLabel(" rot Z")
r_label_layout.addWidget(r1_label)
r_label_layout.addWidget(r2_label)
r_label_layout.addWidget(r3_label)
r_data_layout = QHBoxLayout()
self.r1_data = QLabel(empty_str)
self.r2_data = QLabel(empty_str)
self.r3_data = QLabel(empty_str)
r_data_layout.addWidget(self.r1_data)
r_data_layout.addWidget(self.r2_data)
r_data_layout.addWidget(self.r3_data)
r_layout.addLayout(r_label_layout)
r_layout.addLayout(r_data_layout)
crys_v_layout = QVBoxLayout()
crys_v_layout.addLayout(cell_v_layout)
crys_v_layout.addLayout(r_layout)
# crys_v_layout.addStretch()
cell_group.setLayout(crys_v_layout)
scan_group = QGroupBox(" Scan ")
scan_v_layout = QVBoxLayout()
scan_v_layout.addLayout(get_spacebox(180))
scan_v_layout.addWidget(QLabel(" Image Range "))
img_ran_h_layout = QHBoxLayout()
img_ran1_v_layout = QVBoxLayout()
# img_ran1_label = QLabel(" from")
self.img_ran1_data = QLabel(empty_str)
# img_ran1_v_layout.addWidget(img_ran1_label)
img_ran1_v_layout.addWidget(self.img_ran1_data)
img_ran2_v_layout = QVBoxLayout()
# img_ran2_label = QLabel(" to")
self.img_ran2_data = QLabel(empty_str)
# img_ran2_v_layout.addWidget(img_ran2_label)
img_ran2_v_layout.addWidget(self.img_ran2_data)
img_ran_h_layout.addLayout(img_ran1_v_layout)
img_ran_h_layout.addLayout(img_ran2_v_layout)
scan_v_layout.addLayout(img_ran_h_layout)
scan_v_layout.addWidget(QLabel(" "))
oscil_h_layout = QHBoxLayout()
oscil1_v_layout = QVBoxLayout()
oscil_h_layout.addWidget(QLabel("Oscillation "))
oscil2_v_layout = QVBoxLayout()
# oscil2_label = QLabel(" to ")
self.oscil2_data = QLabel(empty_str)
# oscil2_v_layout.addWidget(oscil2_label)
oscil2_v_layout.addWidget(self.oscil2_data)
oscil_h_layout.addLayout(oscil1_v_layout)
oscil_h_layout.addLayout(oscil2_v_layout)
scan_v_layout.addLayout(oscil_h_layout)
e_time_label = QLabel("Exposure Time")
self.e_time_data = QLabel(empty_str)
e_time_hbox = QHBoxLayout()
e_time_hbox.addWidget(e_time_label)
e_time_hbox.addWidget(self.e_time_data)
scan_v_layout.addLayout(e_time_hbox)
scan_v_layout.addWidget(QLabel(" "))
strn_sp_label = QLabel("Strong Spots")
self.strn_sp_data = QLabel(empty_str)
strn_hbox = QHBoxLayout()
strn_hbox.addWidget(strn_sp_label)
strn_hbox.addWidget(self.strn_sp_data)
scan_v_layout.addLayout(strn_hbox)
# scan_v_layout.addWidget(QLabel(" "))
indx_sp_label = QLabel("Indexed Spots")
self.indx_sp_data = QLabel(empty_str)
indx_hbox = QHBoxLayout()
indx_hbox.addWidget(indx_sp_label)
indx_hbox.addWidget(self.indx_sp_data)
scan_v_layout.addLayout(indx_hbox)
# scan_v_layout.addWidget(QLabel(" "))
refn_sp_label = QLabel("Refined Spots")
self.refn_sp_data = QLabel(empty_str)
refn_hbox = QHBoxLayout()
refn_hbox.addWidget(refn_sp_label)
refn_hbox.addWidget(self.refn_sp_data)
scan_v_layout.addLayout(refn_hbox)
# scan_v_layout.addWidget(QLabel(" "))
itgr_prf_label = QLabel("Prof int Spots")
self.itgr_prf_data = QLabel(empty_str)
itgr_prf_hbox = QHBoxLayout()
itgr_prf_hbox.addWidget(itgr_prf_label)
itgr_prf_hbox.addWidget(self.itgr_prf_data)
scan_v_layout.addLayout(itgr_prf_hbox)
# scan_v_layout.addWidget(QLabel(" "))
itgr_sum_label = QLabel("Sum int Spots")
self.itgr_sum_data = QLabel(empty_str)
itgr_sum_hbox = QHBoxLayout()
itgr_sum_hbox.addWidget(itgr_sum_label)
itgr_sum_hbox.addWidget(self.itgr_sum_data)
scan_v_layout.addLayout(itgr_sum_hbox)
scan_v_layout.addStretch()
scan_group.setLayout(scan_v_layout)
detec_group = QGroupBox(" Detector ")
detec_v_layout = QVBoxLayout()
detec_v_layout.addLayout(get_spacebox(160))
# detec_v_layout.addWidget(QLabel(" "))
d_dist_label = QLabel(" Distance (mm)")
self.d_dist_data = QLabel(empty_str)
d_dist_hbox = QHBoxLayout()
d_dist_hbox.addWidget(d_dist_label)
d_dist_hbox.addWidget(self.d_dist_data)
detec_v_layout.addLayout(d_dist_hbox)
# detec_v_layout.addWidget(QLabel(" "))
n_pans_label = QLabel(" Number of Panels ")
self.n_pans_data = QLabel(empty_str)
n_pans_hbox = QHBoxLayout()
n_pans_hbox.addWidget(n_pans_label)
n_pans_hbox.addWidget(self.n_pans_data)
detec_v_layout.addLayout(n_pans_hbox)
# detec_v_layout.addWidget(QLabel(" "))
gain_label = QLabel(" Gain ")
self.gain_data = QLabel(empty_str)
gain_hbox = QHBoxLayout()
gain_hbox.addWidget(gain_label)
gain_hbox.addWidget(self.gain_data)
detec_v_layout.addLayout(gain_hbox)
# detec_v_layout.addWidget(QLabel(" "))
max_res_label = QLabel(" Max res (" + u"\u212B" + ")")
self.max_res_data = QLabel(empty_str)
max_res_hbox = QHBoxLayout()
max_res_hbox.addWidget(max_res_label)
max_res_hbox.addWidget(self.max_res_data)
detec_v_layout.addLayout(max_res_hbox)
detec_v_layout.addWidget(QLabel(" "))
pix_size_label = QLabel(" Pixel Size ")
detec_v_layout.addWidget(pix_size_label)
px_h_layout = QHBoxLayout()
px_x_v_layout = QVBoxLayout()
x_px_size_label = QLabel(" X (mm)")
self.x_px_size_data = QLabel(empty_str)
px_x_v_layout.addWidget(x_px_size_label)
px_x_v_layout.addWidget(self.x_px_size_data)
px_y_v_layout = QVBoxLayout()
y_px_size_label = QLabel(" Y (mm)")
self.y_px_size_data = QLabel(empty_str)
px_y_v_layout.addWidget(y_px_size_label)
px_y_v_layout.addWidget(self.y_px_size_data)
px_h_layout.addLayout(px_x_v_layout)
px_h_layout.addLayout(px_y_v_layout)
detec_v_layout.addLayout(px_h_layout)
# detec_v_layout.addWidget(QLabel(" "))
# detec_v_layout.addStretch()
detec_group.setLayout(detec_v_layout)
left_big_box = QHBoxLayout()
left_big_box.addWidget(beam_group)
left_big_box.addWidget(cell_group)
left_big_box.addStretch()
right_big_box = QHBoxLayout()
right_big_box.addWidget(detec_group)
right_big_box.addWidget(scan_group)
right_big_box.addStretch()
inner_main_h_box = QVBoxLayout()
inner_main_h_box.addLayout(left_big_box)
inner_main_h_box.addLayout(right_big_box)
self.my_json_path = None
self.my_pikl_path = None
self.update_data(exp_json_path=self.my_json_path,
refl_pikl_path=self.my_pikl_path)
self.my_scrollable = QScrollArea()
tmp_widget = QWidget()
tmp_widget.setLayout(inner_main_h_box)
self.my_scrollable.setWidget(tmp_widget)
main_v_box = QVBoxLayout()
main_v_box.addWidget(self.my_scrollable)
self.setLayout(main_v_box)
class qSlicerMultiVolumeExplorerModuleWidget(
qSlicerMultiVolumeExplorerSimplifiedModuleWidget):
def __init__(self, parent=None):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.__init__(self, parent)
def setupAdditionalFrames(self):
self.setupPlotSettingsFrame()
def setupInputFrame(self, parent=None):
self.inputFrame = ctk.ctkCollapsibleButton()
self.inputFrame.text = "Input"
self.inputFrame.collapsed = 0
inputFrameCollapsibleLayout = QFormLayout(self.inputFrame)
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupInputFrame(
self, parent=inputFrameCollapsibleLayout)
self.layout.addWidget(self.inputFrame)
self.fgMultiVolumeSelector = slicer.qMRMLNodeComboBox()
self.fgMultiVolumeSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.fgMultiVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.fgMultiVolumeSelector.addEnabled = 0
self.fgMultiVolumeSelector.noneEnabled = 1
self.fgMultiVolumeSelector.toolTip = "Secondary multivolume will be used for the secondary \
plot in interactive charting. As an example, this can be used to overlay the \
curve obtained by fitting a model to the data"
self.inputFrameLayout.addRow(QLabel('Input secondary multivolume'),
self.fgMultiVolumeSelector)
def setupFrameControlFrame(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupFrameControlFrame(
self)
self.frameCopySelector = slicer.qMRMLNodeComboBox()
self.frameCopySelector.setSizePolicy(QSizePolicy.Ignored,
QSizePolicy.Preferred)
self.frameCopySelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.frameCopySelector.setMRMLScene(slicer.mrmlScene)
self.frameCopySelector.addEnabled = 1
self.frameCopySelector.enabled = 0
# do not show "children" of vtkMRMLScalarVolumeNode
self.frameCopySelector.hideChildNodeTypes = [
"vtkMRMLDiffusionWeightedVolumeNode",
"vtkMRMLDiffusionTensorVolumeNode", "vtkMRMLVectorVolumeNode"
]
self.extractFrameCopy = False
self.extractFrameCheckBox = QCheckBox('Enable copying')
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Current frame copy'))
hbox.addWidget(self.frameCopySelector)
hbox.addWidget(self.extractFrameCheckBox)
self.inputFrameLayout.addRow(hbox)
def setupPlotSettingsFrame(self):
self.plotSettingsFrame = ctk.ctkCollapsibleButton()
self.plotSettingsFrame.text = "Plotting Settings"
self.plotSettingsFrame.collapsed = 1
plotSettingsFrameLayout = QFormLayout(self.plotSettingsFrame)
self.layout.addWidget(self.plotSettingsFrame)
# label map for probing
self.labelMapSelector = slicer.qMRMLNodeComboBox()
self.labelMapSelector.nodeTypes = ['vtkMRMLLabelMapVolumeNode']
self.labelMapSelector.toolTip = 'Label map to be probed'
self.labelMapSelector.setMRMLScene(slicer.mrmlScene)
self.labelMapSelector.addEnabled = 0
self.chartButton = QPushButton('Chart')
self.chartButton.setEnabled(False)
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Probed label volume'))
hbox.addWidget(self.labelMapSelector)
hbox.addWidget(self.chartButton)
plotSettingsFrameLayout.addRow(hbox)
self.iCharting = QCheckBox('Interactive charting')
self.iCharting.setChecked(True)
plotSettingsFrameLayout.addRow(self.iCharting)
self.iChartingMode = QButtonGroup()
self.iChartingIntensity = QRadioButton('Signal intensity')
self.iChartingIntensityFixedAxes = QRadioButton(
'Fixed range intensity')
self.iChartingPercent = QRadioButton('Percentage change')
self.iChartingIntensity.setChecked(1)
self.iChartingMode.addButton(self.iChartingIntensity)
self.iChartingMode.addButton(self.iChartingIntensityFixedAxes)
self.iChartingMode.addButton(self.iChartingPercent)
hbox = QHBoxLayout()
self.plottingModeGroupBox = QGroupBox('Plotting mode:')
plottingModeLayout = QVBoxLayout()
self.plottingModeGroupBox.setLayout(plottingModeLayout)
plottingModeLayout.addWidget(self.iChartingIntensity)
plottingModeLayout.addWidget(self.iChartingIntensityFixedAxes)
plottingModeLayout.addWidget(self.iChartingPercent)
hbox.addWidget(self.plottingModeGroupBox)
self.showLegendCheckBox = QCheckBox('Display legend')
self.showLegendCheckBox.setChecked(0)
self.xLogScaleCheckBox = QCheckBox('Use log scale for X axis')
self.xLogScaleCheckBox.setChecked(0)
self.yLogScaleCheckBox = QCheckBox('Use log scale for Y axis')
self.yLogScaleCheckBox.setChecked(0)
self.plotGeneralSettingsGroupBox = QGroupBox('General Plot options:')
plotGeneralSettingsLayout = QVBoxLayout()
self.plotGeneralSettingsGroupBox.setLayout(plotGeneralSettingsLayout)
plotGeneralSettingsLayout.addWidget(self.showLegendCheckBox)
plotGeneralSettingsLayout.addWidget(self.xLogScaleCheckBox)
plotGeneralSettingsLayout.addWidget(self.yLogScaleCheckBox)
hbox.addWidget(self.plotGeneralSettingsGroupBox)
plotSettingsFrameLayout.addRow(hbox)
self.nFramesBaselineCalculation = QSpinBox()
self.nFramesBaselineCalculation.minimum = 1
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Frame count(baseline calculation):'))
hbox.addWidget(self.nFramesBaselineCalculation)
plotSettingsFrameLayout.addRow(hbox)
def setupPlottingFrame(self, parent=None):
self.plotFrame = ctk.ctkCollapsibleButton()
self.plotFrame.text = "Plotting"
self.plotFrame.collapsed = 0
plotFrameLayout = QGridLayout(self.plotFrame)
self.layout.addWidget(self.plotFrame)
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupPlottingFrame(
self, parent=plotFrameLayout)
def onDockChartViewToggled(self, checked):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onDockChartViewToggled(
self, checked)
if checked:
self.layout.removeWidget(self.plotFrame)
self.plotFrame.hide()
def dockChartView(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.dockChartView(self)
self.layout.addWidget(self.plotFrame)
self.plotFrame.show()
def setFramesEnabled(self, enabled):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setFramesEnabled(
self, enabled)
self.plotSettingsFrame.setEnabled(enabled)
self.plotFrame.setEnabled(enabled)
self.plotFrame.collapsed = 0 if enabled else 1
def setupConnections(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupConnections(self)
self.labelMapSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.onLabelNodeChanged)
self.chartButton.connect('clicked()', self.onLabeledChartRequested)
self.xLogScaleCheckBox.connect('stateChanged(int)',
self.onXLogScaleRequested)
self.yLogScaleCheckBox.connect('stateChanged(int)',
self.onYLogScaleRequested)
self.nFramesBaselineCalculation.valueChanged.connect(
self.onFrameCountBaselineCalculationChanged)
self.iChartingMode.buttonClicked.connect(self.onChartingModeChanged)
self.showLegendCheckBox.connect('stateChanged(int)',
self.onShowLegendChanged)
self.fgMultiVolumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.onForegroundInputChanged)
self.extractFrameCheckBox.connect('stateChanged(int)',
self.onExtractFrameChanged)
self.frameCopySelector.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.onVFMRMLSceneChanged)
def onFrameCountBaselineCalculationChanged(self, value):
self._multiVolumeIntensityChart.nFramesForBaselineCalculation = value
def onChartingModeChanged(self, button):
if button is self.iChartingIntensity:
self._multiVolumeIntensityChart.activateSignalIntensityMode()
elif button is self.iChartingIntensityFixedAxes:
self._multiVolumeIntensityChart.activateFixedRangeIntensityMode()
elif button is self.iChartingPercent:
self._multiVolumeIntensityChart.activatePercentageChangeMode()
def onShowLegendChanged(self, checked):
self._multiVolumeIntensityChart.showLegend = True if checked == 2 else False
def onXLogScaleRequested(self, checked):
self._multiVolumeIntensityChart.showXLogScale = True if checked == 2 else False
def onYLogScaleRequested(self, checked):
self._multiVolumeIntensityChart.showYLogScale = True if checked == 2 else False
def onLVMRMLSceneChanged(self, mrmlScene):
self.labelMapSelector.setMRMLScene(slicer.mrmlScene)
def onVFMRMLSceneChanged(self, mrmlScene):
self.frameCopySelector.setMRMLScene(slicer.mrmlScene)
def onLabelNodeChanged(self):
labelNode = self.labelMapSelector.currentNode()
self.chartButton.setEnabled(labelNode is not None
and self._bgMultiVolumeNode is not None)
def onForegroundInputChanged(self):
logging.info(
"qSlicerMultiVolumeExplorerModuleWidget:ForegroundInputChanged")
self._fgMultiVolumeNode = self.fgMultiVolumeSelector.currentNode()
self._multiVolumeIntensityChart.fgMultiVolumeNode = self.fgMultiVolumeSelector.currentNode(
)
self.refreshGUIForNewBackgroundImage()
def onBackgroundInputChanged(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onBackgroundInputChanged(
self)
if self._bgMultiVolumeNode is not None:
self.frameCopySelector.setCurrentNode(None)
self.nFramesBaselineCalculation.maximum = self._bgMultiVolumeNode.GetNumberOfFrames(
)
self.onLabelNodeChanged()
'''
If extract button is checked, will copy the current frame to the
selected volume node on each event from frame slider
'''
def onExtractFrameChanged(self, checked):
if checked:
self.extractFrameCopy = True
self.onSliderChanged(self.frameSlider.value)
else:
self.extractFrameCopy = False
def onSliderChanged(self, frameId):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onSliderChanged(
self, frameId)
frameId = int(frameId)
if self.extractFrameCopy:
frameVolume = self.frameCopySelector.currentNode()
frameVolumeCopy = Helper.extractFrame(frameVolume,
self._bgMultiVolumeNode,
frameId)
if not frameVolume:
self.frameCopySelector.setCurrentNode(frameVolumeCopy)
frameName = '%s frame %d' % (self._bgMultiVolumeNode.GetName(),
frameId)
frameVolumeCopy.SetName(frameName)
def onLabeledChartRequested(self):
labelNode = self.labelMapSelector.currentNode()
mvNode = self._bgMultiVolumeNode
mvLabels = MultiVolumeIntensityChartView.getMultiVolumeLabels(
self._bgMultiVolumeNode)
chartViewNode = LabeledImageChartView(
labelNode=labelNode,
multiVolumeNode=mvNode,
multiVolumeLabels=mvLabels,
baselineFrames=self.nFramesBaselineCalculation,
displayPercentageChange=self.iChartingPercent.checked)
chartViewNode.requestChartCreation()
def processEvent(self, observee, event):
if not self.iCharting.checked:
return
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.processEvent(
self, observee, event)
class qSlicerMultiVolumeExplorerModuleWidget(qSlicerMultiVolumeExplorerSimplifiedModuleWidget):
def __init__(self, parent=None):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.__init__(self, parent)
def setupAdditionalFrames(self):
self.setupPlotSettingsFrame()
def setupInputFrame(self, parent=None):
self.inputFrame = ctk.ctkCollapsibleButton()
self.inputFrame.text = "Input"
self.inputFrame.collapsed = 0
inputFrameCollapsibleLayout = QFormLayout(self.inputFrame)
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupInputFrame(self, parent=inputFrameCollapsibleLayout)
self.layout.addWidget(self.inputFrame)
self.fgMultiVolumeSelector = slicer.qMRMLNodeComboBox()
self.fgMultiVolumeSelector.nodeTypes = ['vtkMRMLMultiVolumeNode']
self.fgMultiVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.fgMultiVolumeSelector.addEnabled = 0
self.fgMultiVolumeSelector.noneEnabled = 1
self.fgMultiVolumeSelector.toolTip = "Secondary multivolume will be used for the secondary \
plot in interactive charting. As an example, this can be used to overlay the \
curve obtained by fitting a model to the data"
self.inputFrameLayout.addRow(QLabel('Input secondary multivolume'), self.fgMultiVolumeSelector)
def setupFrameControlFrame(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupFrameControlFrame(self)
self.frameCopySelector = slicer.qMRMLNodeComboBox()
self.frameCopySelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.frameCopySelector.setMRMLScene(slicer.mrmlScene)
self.frameCopySelector.addEnabled = 1
self.frameCopySelector.enabled = 0
# do not show "children" of vtkMRMLScalarVolumeNode
self.frameCopySelector.hideChildNodeTypes = ["vtkMRMLDiffusionWeightedVolumeNode",
"vtkMRMLDiffusionTensorVolumeNode",
"vtkMRMLVectorVolumeNode"]
self.extractFrameCopy = False
self.extractFrameCheckBox = QCheckBox('Enable copying')
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Current frame copy'))
hbox.addWidget(self.frameCopySelector)
hbox.addWidget(self.extractFrameCheckBox)
self.inputFrameLayout.addRow(hbox)
def setupPlotSettingsFrame(self):
self.plotSettingsFrame = ctk.ctkCollapsibleButton()
self.plotSettingsFrame.text = "Plotting Settings"
self.plotSettingsFrame.collapsed = 1
plotSettingsFrameLayout = QFormLayout(self.plotSettingsFrame)
self.layout.addWidget(self.plotSettingsFrame)
# label map for probing
self.labelMapSelector = slicer.qMRMLNodeComboBox()
self.labelMapSelector.nodeTypes = ['vtkMRMLLabelMapVolumeNode']
self.labelMapSelector.toolTip = 'Label map to be probed'
self.labelMapSelector.setMRMLScene(slicer.mrmlScene)
self.labelMapSelector.addEnabled = 0
self.chartButton = QPushButton('Chart')
self.chartButton.setEnabled(False)
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Probed label volume'))
hbox.addWidget(self.labelMapSelector)
hbox.addWidget(self.chartButton)
plotSettingsFrameLayout.addRow(hbox)
self.iCharting = QCheckBox('Interactive charting')
self.iCharting.setChecked(True)
plotSettingsFrameLayout.addRow(self.iCharting)
self.iChartingMode = QButtonGroup()
self.iChartingIntensity = QRadioButton('Signal intensity')
self.iChartingIntensityFixedAxes = QRadioButton('Fixed range intensity')
self.iChartingPercent = QRadioButton('Percentage change')
self.iChartingIntensity.setChecked(1)
self.iChartingMode.addButton(self.iChartingIntensity)
self.iChartingMode.addButton(self.iChartingIntensityFixedAxes)
self.iChartingMode.addButton(self.iChartingPercent)
hbox = QHBoxLayout()
self.plottingModeGroupBox = QGroupBox('Plotting mode:')
plottingModeLayout = QVBoxLayout()
self.plottingModeGroupBox.setLayout(plottingModeLayout)
plottingModeLayout.addWidget(self.iChartingIntensity)
plottingModeLayout.addWidget(self.iChartingIntensityFixedAxes)
plottingModeLayout.addWidget(self.iChartingPercent)
hbox.addWidget(self.plottingModeGroupBox)
self.showLegendCheckBox = QCheckBox('Display legend')
self.showLegendCheckBox.setChecked(0)
self.xLogScaleCheckBox = QCheckBox('Use log scale for X axis')
self.xLogScaleCheckBox.setChecked(0)
self.yLogScaleCheckBox = QCheckBox('Use log scale for Y axis')
self.yLogScaleCheckBox.setChecked(0)
self.plotGeneralSettingsGroupBox = QGroupBox('General Plot options:')
plotGeneralSettingsLayout = QVBoxLayout()
self.plotGeneralSettingsGroupBox.setLayout(plotGeneralSettingsLayout)
plotGeneralSettingsLayout.addWidget(self.showLegendCheckBox)
plotGeneralSettingsLayout.addWidget(self.xLogScaleCheckBox)
plotGeneralSettingsLayout.addWidget(self.yLogScaleCheckBox)
hbox.addWidget(self.plotGeneralSettingsGroupBox)
plotSettingsFrameLayout.addRow(hbox)
self.nFramesBaselineCalculation = QSpinBox()
self.nFramesBaselineCalculation.minimum = 1
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Frame count(baseline calculation):'))
hbox.addWidget(self.nFramesBaselineCalculation)
plotSettingsFrameLayout.addRow(hbox)
def setupPlottingFrame(self, parent=None):
self.plotFrame = ctk.ctkCollapsibleButton()
self.plotFrame.text = "Plotting"
self.plotFrame.collapsed = 0
plotFrameLayout = QGridLayout(self.plotFrame)
self.layout.addWidget(self.plotFrame)
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupPlottingFrame(self, parent=plotFrameLayout)
def onDockChartViewToggled(self, checked):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onDockChartViewToggled(self, checked)
if checked:
self.layout.removeWidget(self.plotFrame)
self.plotFrame.hide()
def dockChartView(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.dockChartView(self)
self.layout.addWidget(self.plotFrame)
self.plotFrame.show()
def setFramesEnabled(self, enabled):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setFramesEnabled(self, enabled)
self.plotSettingsFrame.setEnabled(enabled)
self.plotFrame.setEnabled(enabled)
self.plotFrame.collapsed = 0 if enabled else 1
def setupConnections(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.setupConnections(self)
self.labelMapSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onLabelNodeChanged)
self.chartButton.connect('clicked()', self.onLabeledChartRequested)
self.xLogScaleCheckBox.connect('stateChanged(int)', self.onXLogScaleRequested)
self.yLogScaleCheckBox.connect('stateChanged(int)', self.onYLogScaleRequested)
self.nFramesBaselineCalculation.valueChanged.connect(self.onFrameCountBaselineCalculationChanged)
self.iChartingMode.buttonClicked.connect(self.onChartingModeChanged)
self.showLegendCheckBox.connect('stateChanged(int)', self.onShowLegendChanged)
self.fgMultiVolumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.onForegroundInputChanged)
self.extractFrameCheckBox.connect('stateChanged(int)', self.onExtractFrameChanged)
self.frameCopySelector.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onVFMRMLSceneChanged)
def onFrameCountBaselineCalculationChanged(self, value):
self._multiVolumeIntensityChart.nFramesForBaselineCalculation = value
def onChartingModeChanged(self, button):
if button is self.iChartingIntensity:
self._multiVolumeIntensityChart.activateSignalIntensityMode()
elif button is self.iChartingIntensityFixedAxes:
self._multiVolumeIntensityChart.activateFixedRangeIntensityMode()
elif button is self.iChartingPercent:
self._multiVolumeIntensityChart.activatePercentageChangeMode()
def onShowLegendChanged(self, checked):
self._multiVolumeIntensityChart.showLegend = True if checked == 2 else False
def onXLogScaleRequested(self, checked):
self._multiVolumeIntensityChart.showXLogScale = True if checked == 2 else False
def onYLogScaleRequested(self, checked):
self._multiVolumeIntensityChart.showYLogScale = True if checked == 2 else False
def onLVMRMLSceneChanged(self, mrmlScene):
self.labelMapSelector.setMRMLScene(slicer.mrmlScene)
def onVFMRMLSceneChanged(self, mrmlScene):
self.frameCopySelector.setMRMLScene(slicer.mrmlScene)
def onLabelNodeChanged(self):
labelNode = self.labelMapSelector.currentNode()
self.chartButton.setEnabled(labelNode is not None and self._bgMultiVolumeNode is not None)
def onForegroundInputChanged(self):
logging.info("qSlicerMultiVolumeExplorerModuleWidget:ForegroundInputChanged")
self._fgMultiVolumeNode = self.fgMultiVolumeSelector.currentNode()
self._multiVolumeIntensityChart.fgMultiVolumeNode = self.fgMultiVolumeSelector.currentNode()
self.refreshGUIForNewBackgroundImage()
def onBackgroundInputChanged(self):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onBackgroundInputChanged(self)
if self._bgMultiVolumeNode is not None:
self.frameCopySelector.setCurrentNode(None)
self.nFramesBaselineCalculation.maximum = self._bgMultiVolumeNode.GetNumberOfFrames()
self.onLabelNodeChanged()
'''
If extract button is checked, will copy the current frame to the
selected volume node on each event from frame slider
'''
def onExtractFrameChanged(self, checked):
if checked:
self.extractFrameCopy = True
self.onSliderChanged(self.frameSlider.value)
else:
self.extractFrameCopy = False
def onSliderChanged(self, frameId):
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.onSliderChanged(self, frameId)
frameId = int(frameId)
if self.extractFrameCopy:
frameVolume = self.frameCopySelector.currentNode()
frameVolumeCopy = Helper.extractFrame(frameVolume, self._bgMultiVolumeNode, frameId)
if not frameVolume:
self.frameCopySelector.setCurrentNode(frameVolumeCopy)
frameName = '%s frame %d' % (self._bgMultiVolumeNode.GetName(), frameId)
frameVolumeCopy.SetName(frameName)
def onLabeledChartRequested(self):
labelNode = self.labelMapSelector.currentNode()
mvNode = self._bgMultiVolumeNode
mvLabels = MultiVolumeIntensityChartView.getMultiVolumeLabels(self._bgMultiVolumeNode)
chartViewNode = LabeledImageChartView(labelNode=labelNode,
multiVolumeNode=mvNode,
multiVolumeLabels=mvLabels,
baselineFrames=self.nFramesBaselineCalculation,
displayPercentageChange=self.iChartingPercent.checked)
chartViewNode.requestChartCreation()
def processEvent(self, observee, event):
if not self.iCharting.checked:
return
qSlicerMultiVolumeExplorerSimplifiedModuleWidget.processEvent(self, observee, event)
