def _dock_add_spin_box(self,
name,
value,
rng,
callback,
*,
compact=True,
double=True,
step=None,
tooltip=None,
layout=None):
layout = self._dock_named_layout(name=name,
layout=layout,
compact=compact)
value = value if double else int(value)
widget = QDoubleSpinBox() if double else QSpinBox()
_set_widget_tooltip(widget, tooltip)
widget.setAlignment(Qt.AlignCenter)
widget.setMinimum(rng[0])
widget.setMaximum(rng[1])
widget.setKeyboardTracking(False)
if step is None:
inc = (rng[1] - rng[0]) / 20.
inc = max(int(round(inc)), 1) if not double else inc
widget.setSingleStep(inc)
else:
widget.setSingleStep(step)
widget.setValue(value)
widget.valueChanged.connect(callback)
self._layout_add_widget(layout, widget)
return _QtWidget(widget)
def __add_option(self, name: str, option: QDoubleSpinBox) -> None:
"""Add widgets for option."""
layout = QHBoxLayout()
label = QLabel(name, self)
option.setValue(1)
option.setMaximum(10000)
option.setMinimum(0.01)
layout.addWidget(label)
layout.addWidget(option)
self.main_layout.addLayout(layout)
def createDoubleSpinBox(self, variable_name, variable_value, variable_type, analysis_module_variables_model):
spinner = QDoubleSpinBox()
spinner.setDecimals(6)
spinner.setMinimumWidth(75)
spinner.setMaximum(analysis_module_variables_model.getVariableMaximumValue(variable_name))
spinner.setMinimum(analysis_module_variables_model.getVariableMinimumValue(variable_name))
spinner.setSingleStep(analysis_module_variables_model.getVariableStepValue(variable_name))
spinner.setValue(variable_value)
spinner.valueChanged.connect(partial(self.valueChanged, variable_name, variable_type, spinner))
return spinner
def spinbox(v: float = 0.,
*,
minimum: float = 0.,
maximum: float = 9999.,
prefix: bool = False) -> QDoubleSpinBox:
double_spinbox = QDoubleSpinBox()
double_spinbox.setMinimum(minimum)
double_spinbox.setMaximum(maximum)
double_spinbox.setValue(v)
if prefix:
double_spinbox.setPrefix("±")
return double_spinbox
def createEditor(self, parent, option, index):
"""Override.
Create and editor based on the cell type
"""
if index.column() == 2:
editor = QDoubleSpinBox(parent)
editor.setDecimals(3)
editor.setMaximum(10)
editor.setMinimum(0)
editor.setSingleStep(0.001)
return editor
def add_float_box(layout,
default,
minimum,
maximum,
label,
step,
row,
column=0):
box = QDoubleSpinBox()
box.setMinimum(minimum)
box.setMaximum(maximum)
box.setValue(default)
box.setSingleStep(step)
layout.addWidget(QLabel(label), row, column)
layout.addWidget(box, row, column + 1)
return box
class PMGNumberSpinCtrl(BaseExtendedWidget):
"""
利用spinbox的控制面板，当最大值、最小值、初始值和步长均为整数的时候，类型为整数；、反之只要有任意一个是float，
类型就是浮点数了。
"""
def __init__(self, layout_dir: str, title: str, initial_value: Union[int, float], unit: str = '',
val_range: Tuple[Union[float, int], Union[float, int]] = (None, None),
step: int = 1):
super().__init__(layout_dir)
self.on_check_callback = None
self.prefix = QLabel(text=title)
entryLayout = QHBoxLayout()
entryLayout.setContentsMargins(0, 0, 0, 0)
self.min, self.max = val_range
self.step = step
if isinstance(self.min, int) and isinstance(self.max, int) and isinstance(self.step, int) \
and isinstance(initial_value, int):
self.ctrl = QSpinBox()
else:
self.ctrl = QDoubleSpinBox()
self.ctrl.valueChanged.connect(self.on_value_changed)
self.postfix = QLabel(text=unit)
# self.central_layout.addWidget(self.prefix)
self.central_layout.addLayout(entryLayout)
entryLayout.addWidget(self.prefix)
entryLayout.addWidget(self.ctrl)
entryLayout.addWidget(self.postfix)
if self.min is not None:
self.ctrl.setMinimum(self.min)
if self.max is not None:
self.ctrl.setMaximum(self.max)
self.ctrl.setSingleStep(step)
self.accury = initial_value
self.set_value(initial_value)
def set_value(self, value: Union[float, int]) -> None:
self.ctrl.setValue(value)
def get_value(self) -> Union[int, float]:
return self.ctrl.value()
def on_value_changed(self):
self.signal_param_changed.emit(self.name)
class OffsetPlots(BetterLayout):
"""Create a visual offset in the plots"""
# TODO: implement the offset code
def __init__(self, *args, **kwargs):
super(OffsetPlots, self).__init__(*args, **kwargs)
self.offset_box = QDoubleSpinBox()
self.offset_box.setMinimum(0.0)
self.offset_box.setDecimals(1)
self.offset_box.setSingleStep(0.1)
self.offset_button = QPushButton("Enable Offset")
self.offset_button.setCheckable(True)
self.offset_button.toggled.connect(self._offset_toggled)
layout = QHBoxLayout()
layout.addWidget(self.offset_box)
layout.addWidget(self.offset_button)
self.add_widget_to_bottom(layout)
def _offset_toggled(self, enabled):
if enabled:
self.offset_button.setText("Disable Offset")
else:
self.offset_button.setText("Enable Offset")
def setupParameters(self, model):
pBias = model.biasParameters()
pSpecific = model.modelSpecificParameters()
parameters = pBias + pSpecific
self.setRowCount(len(parameters))
self.siScale = {}
self.rowMap = {}
for row, parameter in enumerate(parameters):
name, latex, unit, siScale, minimum, maximum, text = parameter
guessSb = QDoubleSpinBox()
if len(unit):
guessSb.setSuffix(' %s' % unit)
guessSb.setMinimum(minimum)
guessSb.setMaximum(maximum)
guessSb.setKeyboardTracking(False)
item = QTableWidgetItem(name)
item.setFlags(Qt.ItemIsUserCheckable | Qt.ItemIsEditable
| Qt.ItemIsEnabled)
item.setCheckState(Qt.Checked)
item.setToolTip(text)
self.setItem(row, 0, item)
self.setCellWidget(row, 1, guessSb)
minSb = QDoubleSpinBox()
maxSb = QDoubleSpinBox()
minSb.setMinimum(minimum)
minSb.setMaximum(maximum)
minSb.setValue(minimum)
maxSb.setMinimum(minimum)
maxSb.setMaximum(maximum)
maxSb.setValue(maximum)
minSb.setKeyboardTracking(False)
maxSb.setKeyboardTracking(False)
maxSb.valueChanged.connect(minSb.setMaximum)
maxSb.valueChanged.connect(guessSb.setMaximum)
minSb.valueChanged.connect(maxSb.setMinimum)
minSb.valueChanged.connect(guessSb.setMinimum)
self.setCellWidget(row, 2, minSb)
self.setCellWidget(row, 3, maxSb)
guessSb.valueChanged.connect(self.parameterGuessChanged)
self.siScale[name] = siScale
self.rowMap[name] = row
class QtVectorsProperties(QtLayerProperties):
def __init__(self, layer):
super().__init__(layer)
self.layer.events.edge_width.connect(self._on_width_change)
self.layer.events.length.connect(self._on_len_change)
# vector color adjustment and widget
face_comboBox = QComboBox()
colors = self.layer._colors
for c in colors:
face_comboBox.addItem(c)
index = face_comboBox.findText(self.layer.edge_color,
Qt.MatchFixedString)
if index >= 0:
face_comboBox.setCurrentIndex(index)
face_comboBox.activated[str].connect(
lambda text=face_comboBox: self.change_edge_color(text))
row = self.grid_layout.rowCount()
self.grid_layout.addWidget(QLabel('color:'), row, self.name_column)
self.grid_layout.addWidget(face_comboBox, row, self.property_column)
# line width in pixels
self.width_field = QDoubleSpinBox()
self.width_field.setSingleStep(0.1)
self.width_field.setMinimum(0.1)
value = self.layer.edge_width
self.width_field.setValue(value)
self.width_field.valueChanged.connect(self.change_width)
row = self.grid_layout.rowCount()
self.grid_layout.addWidget(QLabel('width:'), row, self.name_column)
self.grid_layout.addWidget(self.width_field, row, self.property_column)
# line length
self.length_field = QDoubleSpinBox()
self.length_field.setSingleStep(0.1)
value = self.layer.length
self.length_field.setValue(value)
self.length_field.setMinimum(0.1)
self.length_field.valueChanged.connect(self.change_length)
row = self.grid_layout.rowCount()
self.grid_layout.addWidget(QLabel('length:'), row, self.name_column)
self.grid_layout.addWidget(self.length_field, row,
self.property_column)
self.setExpanded(False)
def change_edge_color(self, text):
self.layer.edge_color = text
def change_connector_type(self, text):
self.layer.connector = text
def change_width(self, value):
self.layer.edge_width = value
def change_length(self, value):
self.layer.length = value
def _on_len_change(self, event):
with self.layer.events.length.blocker():
self.length_field.setValue(self.layer.length)
def _on_width_change(self, event):
with self.layer.events.edge_width.blocker():
self.width_field.setValue(self.layer.edge_width)
class QtVectorsControls(QtLayerControls):
"""Qt view and controls for the napari Vectors layer.
Parameters
----------
layer : napari.layers.Vectors
An instance of a napari Vectors layer.
Attributes
----------
edge_color_label : qtpy.QtWidgets.QLabel
Label for edgeColorSwatch
edgeColorSwatch : qtpy.QtWidgets.QFrame
Color swatch showing display color of vectors.
edgeComboBox : qtpy.QtWidgets.QComboBox
Dropdown widget to select display color for vectors.
color_mode_comboBox : qtpy.QtWidgets.QComboBox
Dropdown widget to select edge_color_mode for the vectors.
color_prop_box : qtpy.QtWidgets.QComboBox
Dropdown widget to select _edge_color_property for the vectors.
edge_prop_label : qtpy.QtWidgets.QLabel
Label for color_prop_box
grid_layout : qtpy.QtWidgets.QGridLayout
Layout of Qt widget controls for the layer.
layer : napari.layers.Vectors
An instance of a napari Vectors layer.
lengthSpinBox : qtpy.QtWidgets.QDoubleSpinBox
Spin box widget controlling line length of vectors.
Multiplicative factor on projections for length of all vectors.
widthSpinBox : qtpy.QtWidgets.QDoubleSpinBox
Spin box widget controlling edge line width of vectors.
"""
def __init__(self, layer):
super().__init__(layer)
self.layer.events.edge_width.connect(self._on_edge_width_change)
self.layer.events.length.connect(self._on_length_change)
self.layer.events.edge_color_mode.connect(
self._on_edge_color_mode_change)
self.layer.events.edge_color.connect(self._on_edge_color_change)
# dropdown to select the property for mapping edge_color
color_properties = self._get_property_values()
color_prop_box = QComboBox(self)
color_prop_box.activated[str].connect(self.change_edge_color_property)
color_prop_box.addItems(color_properties)
self.color_prop_box = color_prop_box
self.edge_prop_label = QLabel(trans._('edge property:'))
# vector direct color mode adjustment and widget
self.edgeColorEdit = QColorSwatchEdit(
initial_color=self.layer.edge_color,
tooltip=trans._('click to set current edge color', ),
)
self.edgeColorEdit.color_changed.connect(self.change_edge_color_direct)
self.edge_color_label = QLabel(trans._('edge color:'))
self._on_edge_color_change()
# dropdown to select the edge color mode
colorModeComboBox = QComboBox(self)
color_modes = [e.value for e in ColorMode]
colorModeComboBox.addItems(color_modes)
colorModeComboBox.activated[str].connect(self.change_edge_color_mode)
self.color_mode_comboBox = colorModeComboBox
self._on_edge_color_mode_change()
# line width in pixels
self.widthSpinBox = QDoubleSpinBox()
self.widthSpinBox.setKeyboardTracking(False)
self.widthSpinBox.setSingleStep(0.1)
self.widthSpinBox.setMinimum(0.1)
self.widthSpinBox.setMaximum(np.inf)
self.widthSpinBox.setValue(self.layer.edge_width)
self.widthSpinBox.valueChanged.connect(self.change_width)
# line length
self.lengthSpinBox = QDoubleSpinBox()
self.lengthSpinBox.setKeyboardTracking(False)
self.lengthSpinBox.setSingleStep(0.1)
self.lengthSpinBox.setValue(self.layer.length)
self.lengthSpinBox.setMinimum(0.1)
self.lengthSpinBox.setMaximum(np.inf)
self.lengthSpinBox.valueChanged.connect(self.change_length)
# grid_layout created in QtLayerControls
# addWidget(widget, row, column, [row_span, column_span])
self.grid_layout.addWidget(QLabel(trans._('opacity:')), 0, 0)
self.grid_layout.addWidget(self.opacitySlider, 0, 1, 1, 2)
self.grid_layout.addWidget(QLabel(trans._('width:')), 1, 0)
self.grid_layout.addWidget(self.widthSpinBox, 1, 1, 1, 2)
self.grid_layout.addWidget(QLabel(trans._('length:')), 2, 0)
self.grid_layout.addWidget(self.lengthSpinBox, 2, 1, 1, 2)
self.grid_layout.addWidget(QLabel(trans._('blending:')), 3, 0)
self.grid_layout.addWidget(self.blendComboBox, 3, 1, 1, 2)
self.grid_layout.addWidget(QLabel(trans._('edge color mode:')), 4, 0)
self.grid_layout.addWidget(self.color_mode_comboBox, 4, 1, 1, 2)
self.grid_layout.addWidget(self.edge_color_label, 5, 0)
self.grid_layout.addWidget(self.edgeColorEdit, 5, 1, 1, 2)
self.grid_layout.addWidget(self.edge_prop_label, 6, 0)
self.grid_layout.addWidget(self.color_prop_box, 6, 1, 1, 2)
self.grid_layout.setRowStretch(7, 1)
self.grid_layout.setColumnStretch(1, 1)
self.grid_layout.setSpacing(4)
def change_edge_color_property(self, property: str):
"""Change edge_color_property of vectors on the layer model.
This property is the property the edge color is mapped to.
Parameters
----------
property : str
property to map the edge color to
"""
mode = self.layer.edge_color_mode
try:
self.layer.edge_color = property
self.layer.edge_color_mode = mode
except TypeError:
# if the selected property is the wrong type for the current color mode
# the color mode will be changed to the appropriate type, so we must update
self._on_edge_color_mode_change()
raise
def change_edge_color_mode(self, mode: str):
"""Change edge color mode of vectors on the layer model.
Parameters
----------
mode : str
Edge color for vectors. Must be: 'direct', 'cycle', or 'colormap'
"""
old_mode = self.layer.edge_color_mode
with self.layer.events.edge_color_mode.blocker():
try:
self.layer.edge_color_mode = mode
self._update_edge_color_gui(mode)
except ValueError:
# if the color mode was invalid, revert to the old mode
self.layer.edge_color_mode = old_mode
raise
def change_edge_color_direct(self, color: np.ndarray):
"""Change edge color of vectors on the layer model.
Parameters
----------
color : np.ndarray
Edge color for vectors, in an RGBA array
"""
self.layer.edge_color = color
def change_width(self, value):
"""Change edge line width of vectors on the layer model.
Parameters
----------
value : float
Line width of vectors.
"""
self.layer.edge_width = value
self.widthSpinBox.clearFocus()
self.setFocus()
def change_length(self, value):
"""Change length of vectors on the layer model.
Multiplicative factor on projections for length of all vectors.
Parameters
----------
value : float
Length of vectors.
"""
self.layer.length = value
self.lengthSpinBox.clearFocus()
self.setFocus()
def _update_edge_color_gui(self, mode: str):
"""Update the GUI element associated with edge_color.
This is typically used when edge_color_mode changes
Parameters
----------
mode : str
The new edge_color mode the GUI needs to be updated for.
Should be: 'direct', 'cycle', 'colormap'
"""
if mode in ('cycle', 'colormap'):
self.edgeColorEdit.setHidden(True)
self.edge_color_label.setHidden(True)
self.color_prop_box.setHidden(False)
self.edge_prop_label.setHidden(False)
elif mode == 'direct':
self.edgeColorEdit.setHidden(False)
self.edge_color_label.setHidden(False)
self.color_prop_box.setHidden(True)
self.edge_prop_label.setHidden(True)
def _get_property_values(self):
"""Get the current property values from the Vectors layer
Returns
-------
property_values : np.ndarray
array of all of the union of the property names (keys)
in Vectors.properties and Vectors._property_choices
"""
property_choices = [*self.layer._property_choices]
properties = [*self.layer.properties]
property_values = np.union1d(property_choices, properties)
return property_values
def _on_length_change(self, event=None):
"""Change length of vectors.
Parameters
----------
event : napari.utils.event.Event, optional
The napari event that triggered this method, by default None.
"""
with self.layer.events.length.blocker():
self.lengthSpinBox.setValue(self.layer.length)
def _on_edge_width_change(self, event=None):
"""Receive layer model width change event and update width spinbox.
Parameters
----------
event : napari.utils.event.Event, optional
The napari event that triggered this method, by default None.
"""
with self.layer.events.edge_width.blocker():
self.widthSpinBox.setValue(self.layer.edge_width)
def _on_edge_color_mode_change(self, event=None):
"""Receive layer model edge color mode change event & update dropdown.
Parameters
----------
event : napari.utils.event.Event, optional
The napari event that triggered this method, by default None.
"""
with qt_signals_blocked(self.color_mode_comboBox):
mode = self.layer._edge.color_mode
index = self.color_mode_comboBox.findText(mode,
Qt.MatchFixedString)
self.color_mode_comboBox.setCurrentIndex(index)
self._update_edge_color_gui(mode)
def _on_edge_color_change(self, event=None):
"""Receive layer model edge color change event & update dropdown.
Parameters
----------
event : napari.utils.event.Event, optional
The napari event that triggered this method, by default None.
"""
if self.layer._edge.color_mode == ColorMode.DIRECT:
with qt_signals_blocked(self.edgeColorEdit):
self.edgeColorEdit.setColor(self.layer.edge_color[0])
elif self.layer._edge.color_mode in (
ColorMode.CYCLE,
ColorMode.COLORMAP,
):
with qt_signals_blocked(self.color_prop_box):
prop = self.layer._edge.color_properties.name
index = self.color_prop_box.findText(prop, Qt.MatchFixedString)
self.color_prop_box.setCurrentIndex(index)
def createEditor(self, parent, option, index):
editor = QDoubleSpinBox(parent)
editor.setMinimum(0)
editor.setDecimals(5)
editor.setSingleStep(0.0001)
return editor
class QtVectorsLayer(QtLayer):
def __init__(self, layer):
super().__init__(layer)
self.layer.events.averaging.connect(self._on_avg_change)
self.layer.events.width.connect(self._on_width_change)
self.layer.events.length.connect(self._on_len_change)
# vector color adjustment and widget
face_comboBox = QComboBox()
colors = self.layer._colors
for c in colors:
face_comboBox.addItem(c)
index = face_comboBox.findText(self.layer.color, Qt.MatchFixedString)
if index >= 0:
face_comboBox.setCurrentIndex(index)
face_comboBox.activated[str].connect(
lambda text=face_comboBox: self.change_face_color(text))
self.grid_layout.addWidget(QLabel('color:'), 3, 0)
self.grid_layout.addWidget(face_comboBox, 3, 1)
# line width in pixels
self.width_field = QDoubleSpinBox()
self.width_field.setSingleStep(0.1)
self.width_field.setMinimum(0.1)
value = self.layer.width
self.width_field.setValue(value)
self.width_field.valueChanged.connect(self.change_width)
self.grid_layout.addWidget(QLabel('width:'), 4, 0)
self.grid_layout.addWidget(self.width_field, 4, 1)
# averaging spinbox
self.averaging_spinbox = QSpinBox()
self.averaging_spinbox.setSingleStep(1)
self.averaging_spinbox.setValue(1)
self.averaging_spinbox.setMinimum(1)
self.averaging_spinbox.valueChanged.connect(self.change_average_type)
self.grid_layout.addWidget(QLabel('avg kernel'), 5, 0)
self.grid_layout.addWidget(self.averaging_spinbox, 5, 1)
# line length
self.length_field = QDoubleSpinBox()
self.length_field.setSingleStep(0.1)
value = self.layer.length
self.length_field.setValue(value)
self.length_field.setMinimum(0.1)
self.length_field.valueChanged.connect(self.change_length)
self.grid_layout.addWidget(QLabel('length:'), 6, 0)
self.grid_layout.addWidget(self.length_field, 6, 1)
self.setExpanded(False)
def change_face_color(self, text):
self.layer.color = text
def change_connector_type(self, text):
self.layer.connector = text
def change_average_type(self, value):
self.layer.averaging = value
def change_width(self, value):
self.layer.width = value
def change_length(self, value):
self.layer.length = value
def _on_avg_change(self, event):
with self.layer.events.averaging.blocker():
self.averaging_spinbox.setValue(self.layer.averaging)
def _on_len_change(self, event):
with self.layer.events.length.blocker():
self.length_field.setValue(self.layer.length)
def _on_width_change(self, event):
with self.layer.events.width.blocker():
self.width_field.setValue(self.layer.width)
class QtVectorsControls(QtLayerControls):
"""Qt view and controls for the napari Vectors layer.
Parameters
----------
layer : napari.layers.Vectors
An instance of a napari Vectors layer.
Attributes
----------
edgeColorSwatch : qtpy.QtWidgets.QFrame
Color swatch showing display color of vectors.
edgeComboBox : qtpy.QtWidgets.QComboBox
Dropdown widget to select display color for vectors.
grid_layout : qtpy.QtWidgets.QGridLayout
Layout of Qt widget controls for the layer.
layer : napari.layers.Vectors
An instance of a napari Vectors layer.
lengthSpinBox : qtpy.QtWidgets.QDoubleSpinBox
Spin box widget controlling line length of vectors.
Multiplicative factor on projections for length of all vectors.
widthSpinBox : qtpy.QtWidgets.QDoubleSpinBox
Spin box widget controlling edge line width of vectors.
"""
def __init__(self, layer):
super().__init__(layer)
self.layer.events.edge_width.connect(self._on_width_change)
self.layer.events.length.connect(self._on_len_change)
self.layer.events.edge_color.connect(self._on_edge_color_change)
# vector color adjustment and widget
edge_comboBox = QComboBox()
edge_comboBox.addItems(self.layer._colors)
edge_comboBox.activated[str].connect(self.change_edge_color)
self.edgeComboBox = edge_comboBox
self.edgeColorSwatch = QFrame()
self.edgeColorSwatch.setObjectName('swatch')
self.edgeColorSwatch.setToolTip('Edge color swatch')
self._on_edge_color_change()
# line width in pixels
self.widthSpinBox = QDoubleSpinBox()
self.widthSpinBox.setKeyboardTracking(False)
self.widthSpinBox.setSingleStep(0.1)
self.widthSpinBox.setMinimum(0.1)
self.widthSpinBox.setValue(self.layer.edge_width)
self.widthSpinBox.valueChanged.connect(self.change_width)
# line length
self.lengthSpinBox = QDoubleSpinBox()
self.lengthSpinBox.setKeyboardTracking(False)
self.lengthSpinBox.setSingleStep(0.1)
self.lengthSpinBox.setValue(self.layer.length)
self.lengthSpinBox.setMinimum(0.1)
self.lengthSpinBox.valueChanged.connect(self.change_length)
# grid_layout created in QtLayerControls
# addWidget(widget, row, column, [row_span, column_span])
self.grid_layout.addWidget(QLabel('opacity:'), 0, 0)
self.grid_layout.addWidget(self.opacitySlider, 0, 1, 1, 2)
self.grid_layout.addWidget(QLabel('width:'), 1, 0)
self.grid_layout.addWidget(self.widthSpinBox, 1, 1, 1, 2)
self.grid_layout.addWidget(QLabel('length:'), 2, 0)
self.grid_layout.addWidget(self.lengthSpinBox, 2, 1, 1, 2)
self.grid_layout.addWidget(QLabel('blending:'), 3, 0)
self.grid_layout.addWidget(self.blendComboBox, 3, 1, 1, 2)
self.grid_layout.addWidget(QLabel('edge color:'), 4, 0)
self.grid_layout.addWidget(self.edgeComboBox, 4, 2)
self.grid_layout.addWidget(self.edgeColorSwatch, 4, 1)
self.grid_layout.setRowStretch(5, 1)
self.grid_layout.setColumnStretch(1, 1)
self.grid_layout.setSpacing(4)
def change_edge_color(self, text):
"""Change edge color of vectors on the layer model.
Parameters
----------
text : str
Edge color for vectors, color name or hex string.
Eg: 'white', 'red', 'blue', '#00ff00', etc.
"""
self.layer.edge_color = text
def change_width(self, value):
"""Change edge line width of vectors on the layer model.
Parameters
----------
value : float
Line width of vectors.
"""
self.layer.edge_width = value
self.widthSpinBox.clearFocus()
self.setFocus()
def change_length(self, value):
"""Change length of vectors on the layer model.
Multiplicative factor on projections for length of all vectors.
Parameters
----------
value : float
Length of vectors.
"""
self.layer.length = value
self.lengthSpinBox.clearFocus()
self.setFocus()
def _on_len_change(self, event=None):
"""Change length of vectors.
Parameters
----------
event : qtpy.QtCore.QEvent, optional.
Event from the Qt context, by default None.
"""
with self.layer.events.length.blocker():
self.lengthSpinBox.setValue(self.layer.length)
def _on_width_change(self, event=None):
""""Receive layer model width change event and update width spinbox.
Parameters
----------
event : qtpy.QtCore.QEvent, optional.
Event from the Qt context, by default None.
"""
with self.layer.events.edge_width.blocker():
self.widthSpinBox.setValue(self.layer.edge_width)
def _on_edge_color_change(self, event=None):
""""Receive layer model edge color change event & update color swatch.
Parameters
----------
event : qtpy.QtCore.QEvent, optional.
Event from the Qt context, by default None.
"""
with self.layer.events.edge_color.blocker():
index = self.edgeComboBox.findText(
self.layer.edge_color, Qt.MatchFixedString
)
self.edgeComboBox.setCurrentIndex(index)
color = Color(self.layer.edge_color).hex
self.edgeColorSwatch.setStyleSheet("background-color: " + color)
class QtVectorsControls(QtLayerControls):
def __init__(self, layer):
super().__init__(layer)
self.layer.events.edge_width.connect(self._on_width_change)
self.layer.events.length.connect(self._on_len_change)
self.layer.events.edge_color.connect(self._on_edge_color_change)
# vector color adjustment and widget
edge_comboBox = QComboBox()
colors = self.layer._colors
for c in colors:
edge_comboBox.addItem(c)
edge_comboBox.activated[str].connect(
lambda text=edge_comboBox: self.change_edge_color(text))
self.edgeComboBox = edge_comboBox
self.edgeColorSwatch = QFrame()
self.edgeColorSwatch.setObjectName('swatch')
self.edgeColorSwatch.setToolTip('Edge color swatch')
self._on_edge_color_change(None)
# line width in pixels
self.widthSpinBox = QDoubleSpinBox()
self.widthSpinBox.setKeyboardTracking(False)
self.widthSpinBox.setSingleStep(0.1)
self.widthSpinBox.setMinimum(0.1)
value = self.layer.edge_width
self.widthSpinBox.setValue(value)
self.widthSpinBox.valueChanged.connect(self.change_width)
# line length
self.lengthSpinBox = QDoubleSpinBox()
self.lengthSpinBox.setKeyboardTracking(False)
self.lengthSpinBox.setSingleStep(0.1)
value = self.layer.length
self.lengthSpinBox.setValue(value)
self.lengthSpinBox.setMinimum(0.1)
self.lengthSpinBox.valueChanged.connect(self.change_length)
# grid_layout created in QtLayerControls
# addWidget(widget, row, column, [row_span, column_span])
self.grid_layout.addWidget(QLabel('opacity:'), 0, 0)
self.grid_layout.addWidget(self.opacitySilder, 0, 1, 1, 2)
self.grid_layout.addWidget(QLabel('width:'), 1, 0)
self.grid_layout.addWidget(self.widthSpinBox, 1, 1, 1, 2)
self.grid_layout.addWidget(QLabel('length:'), 2, 0)
self.grid_layout.addWidget(self.lengthSpinBox, 2, 1, 1, 2)
self.grid_layout.addWidget(QLabel('blending:'), 3, 0)
self.grid_layout.addWidget(self.blendComboBox, 3, 1, 1, 2)
self.grid_layout.addWidget(QLabel('edge color:'), 4, 0)
self.grid_layout.addWidget(self.edgeComboBox, 4, 2)
self.grid_layout.addWidget(self.edgeColorSwatch, 4, 1)
self.grid_layout.setRowStretch(5, 1)
self.grid_layout.setColumnStretch(1, 1)
self.grid_layout.setSpacing(4)
def change_edge_color(self, text):
self.layer.edge_color = text
def change_connector_type(self, text):
self.layer.connector = text
def change_width(self, value):
self.layer.edge_width = value
self.widthSpinBox.clearFocus()
self.setFocus()
def change_length(self, value):
self.layer.length = value
self.lengthSpinBox.clearFocus()
self.setFocus()
def _on_len_change(self, event):
with self.layer.events.length.blocker():
self.lengthSpinBox.setValue(self.layer.length)
def _on_width_change(self, event):
with self.layer.events.edge_width.blocker():
self.widthSpinBox.setValue(self.layer.edge_width)
def _on_edge_color_change(self, event):
with self.layer.events.edge_color.blocker():
index = self.edgeComboBox.findText(self.layer.edge_color,
Qt.MatchFixedString)
self.edgeComboBox.setCurrentIndex(index)
color = Color(self.layer.edge_color).hex
self.edgeColorSwatch.setStyleSheet("background-color: " + color)
class SliderSpinBox(QWidget):
valueChanged = Signal(float)
def __init__(self, parent=None, value_range=(0, 100), slider_steps=100, spinbox_steps=1000, decimals=None):
QWidget.__init__(self, parent)
layout = QHBoxLayout(self)
self.setLayout(layout)
self.horizontalSlider = QSlider(Qt.Horizontal, self)
self.doubleSpinBox = QDoubleSpinBox(self)
self.decimals = decimals
layout.setMargin(0)
layout.addWidget(self.doubleSpinBox)
layout.addWidget(self.horizontalSlider)
self.doubleSpinBox.valueChanged.connect(self.spinbox_changed)
self.horizontalSlider.valueChanged.connect(self.slider_changed)
self.wt = []
self.changer = None
self.slider_steps = slider_steps
self.horizontalSlider.setMaximum(slider_steps)
self.spinbox_steps = spinbox_steps
self.set_range(value_range)
def set_value(self, value):
self.doubleSpinBox.setValue(value)
value = property(lambda self: self.doubleSpinBox.value(), set_value)
def set_range(self, value_range):
self.changer = "set_range"
spinbox_step_decimal = np.ceil(np.log10(1. / (float(value_range[1] - value_range[0]) / self.spinbox_steps)))
self.slider_decimals = int(np.ceil(np.log10(self.slider_steps) - np.log10(value_range[1] - value_range[0])))
if self.decimals is None:
self.doubleSpinBox.setDecimals(spinbox_step_decimal + 1)
else:
self.doubleSpinBox.setDecimals(self.decimals)
spinbox_step_decimal = min(self.decimals, spinbox_step_decimal)
self.slider_decimals = min(self.decimals, self.slider_decimals)
self.doubleSpinBox.setSingleStep(10 ** -spinbox_step_decimal)
self.value_range = value_range
self.doubleSpinBox.setMinimum(value_range[0])
self.doubleSpinBox.setMaximum(value_range[1])
self.horizontalSlider.setValue(np.floor(value_range[0]))
self.changer = None
self.doubleSpinBox.setValue(value_range[0])
def range(self):
return self.doubleSpinBox.minimum(), self.doubleSpinBox.maximum()
def slider_changed(self, value):
if self.changer is None:
self.changer = 'slider'
value = np.round(value * (self.value_range[1] - self.value_range[0]) / self.slider_steps + self.value_range[0], self.slider_decimals)
self.doubleSpinBox.setValue(value)
self.changer = None
self.value_changed(value)
def spinbox_changed(self, value):
if self.changer is None:
self.changer = 'spinbox'
slider_value = .5 + (value - self.value_range[0]) * self.slider_steps / (self.value_range[1] - self.value_range[0])
self.horizontalSlider.setValue(slider_value)
self.changer = None
self.value_changed(value)
@postpone_until_last_call_finishes
def value_changed(self, value):
self.valueChanged.emit(value)
class BPMIntlkLimSPWidget(BaseObject, QWidget):
"""BPM Orbit Interlock Limit Setpoint Widget."""
def __init__(self, parent=None, metric='', prefix=''):
"""Init."""
BaseObject.__init__(self, prefix)
QWidget.__init__(self, parent)
# initialize auxiliary attributes
self.metric = metric.lower()
if 'sum' in self.metric:
self.lim_sp = [
'IntlkLmtMinSum-SP',
]
self.title = 'Min.Sum. Thresholds'
elif 'trans' in self.metric:
self.lim_sp = [
'IntlkLmtTransMinX-SP', 'IntlkLmtTransMaxX-SP',
'IntlkLmtTransMinY-SP', 'IntlkLmtTransMaxY-SP'
]
self.title = 'Translation Thresholds'
elif 'ang' in self.metric:
self.lim_sp = [
'IntlkLmtAngMinX-SP', 'IntlkLmtAngMaxX-SP',
'IntlkLmtAngMinY-SP', 'IntlkLmtAngMaxY-SP'
]
self.title = 'Angulation Thresholds'
else:
raise ValueError(metric)
if 'sum' in self.metric:
self._create_pvs('Sum-Mon')
self._summon = _np.zeros(len(self.BPM_NAMES), dtype=float)
else:
self._set_ref_orb('ref_orb')
self.prefix = prefix
# initialize super
self.setObjectName('SIApp')
self._setupUi()
self.setFocusPolicy(Qt.StrongFocus)
def _setupUi(self):
title = QLabel(self.title, self, alignment=Qt.AlignCenter)
title.setStyleSheet("font-weight: bold;")
title.setSizePolicy(QSzPlcy.Preferred, QSzPlcy.Maximum)
# limit setpoints
self._wid_lims = QGroupBox('Select Thresholds: ')
lay_lims = QGridLayout(self._wid_lims)
lay_lims.setAlignment(Qt.AlignTop)
row = 0
if 'sum' in self.metric:
text = '\nThresholds must be set in Monit1 rate\n'\
'counts. Here we make available you \n'\
'to read Sum-Mon values, in Monit rate\n'\
'counts, and convert them to Monit1\n'\
'rate counts using calibration curves.\n'\
'You can also apply a scale factor to\n'\
'the values read.\n\n'
self._label_help = QLabel(text, self)
lay_lims.addWidget(self._label_help, row, 0, 1, 2)
row += 1
self._pb_get = QPushButton('Get current Sum-Mon', self)
self._pb_get.released.connect(self._get_new_sum)
lay_lims.addWidget(self._pb_get, row, 0, 1, 2)
row += 1
self._label_getsts = QLabel('\n', self)
lay_lims.addWidget(self._label_getsts, row, 0, 1, 2)
row += 1
self._label_scl = QLabel('Scale: ', self)
lay_lims.addWidget(self._label_scl, row, 0)
self._spin_scl = QDoubleSpinBox(self)
self._spin_scl.setDecimals(2)
self._spin_scl.setValue(1.00)
self._spin_scl.setMinimum(-100.00)
self._spin_scl.setMaximum(+100.00)
lay_lims.addWidget(self._spin_scl, row, 1)
else:
self._head_value = QLabel('Value', self, alignment=Qt.AlignCenter)
lay_lims.addWidget(self._head_value, 0, 1)
self._head_send = QLabel('Apply', self, alignment=Qt.AlignCenter)
lay_lims.addWidget(self._head_send, 0, 2)
self._spins, self._checks = dict(), dict()
for lsp in self.lim_sp:
row += 1
text = lsp.split('-')[0].split('Lmt')[1] + ' [nm]: '
label = QLabel(text, self, alignment=Qt.AlignRight)
lay_lims.addWidget(label, row, 0)
spin = QSpinBox(self)
self._spins[lsp] = spin
spin.setValue(0)
spin.setMinimum(-1e9)
spin.setMaximum(1e9)
lay_lims.addWidget(spin, row, 1)
check = QCheckBox(self)
self._checks[lsp] = check
lay_lims.addWidget(check, row, 2, alignment=Qt.AlignCenter)
row += 1
self._label_reforb = QLabel(
'\nChoose Ref.Orb. to calculate reference\n' +
self.title.lower() +
' around which we\napply the values above:')
lay_lims.addWidget(self._label_reforb, row, 0, 1, 3)
row += 1
self._cb_reforb = RefOrbComboBox(self)
self._cb_reforb.refOrbChanged.connect(self._set_ref_orb)
lay_lims.addWidget(self._cb_reforb, row, 0, 1, 3)
if 'trans' in self.metric:
text = '\n\nBPM calculation consider the translation\n' \
'estimative:' \
'\n\n(pos@downstream+pos@upstream)/2\n\n' \
'where the pairs upstream/downstream\nfolow:\n' \
' - M1/M2\n' \
' - C1-1/C1-2\n' \
' - C2/C3-1\n' \
' - C3-2/C4\n'
elif 'ang' in self.metric:
text = '\n\nBPM calculation consider the angulation\n' \
'estimative:' \
'\n\n(pos@downstream - pos@upstream)\n\n' \
'where the pairs upstream/downstream\nfolow:\n' \
' - M1/M2\n' \
' - C1-1/C1-2\n' \
' - C2/C3-1\n' \
' - C3-2/C4\n'
row += 1
self._label_help = QLabel(text, self)
lay_lims.addWidget(self._label_help, row, 0, 1, 3)
# BPM selection
groupsel = QGroupBox('Select BPMs:')
groupsel.setObjectName('groupsel')
groupsel.setStyleSheet('#groupsel{min-width: 27em; max-width: 27em;}')
self._bpm_sel = _BPMSelectionWidget(self,
show_toggle_all_false=False,
toggle_all_true_text='Select All',
prefix=self.prefix)
lay_groupsel = QGridLayout(groupsel)
lay_groupsel.addWidget(self._bpm_sel)
# connect signals and slots
self._bpm_sel.applyChangesClicked.connect(self.send_value)
lay = QGridLayout(self)
lay.addWidget(title, 0, 0, 1, 2)
lay.addWidget(self._wid_lims, 1, 0)
lay.addWidget(groupsel, 1, 1)
def _set_ref_orb(self, text):
self._reforb = dict()
if text.lower() == 'zero':
self._reforb['x'] = _np.zeros(len(self.BPM_NAMES), dtype=float)
self._reforb['y'] = _np.zeros(len(self.BPM_NAMES), dtype=float)
else:
data = self.get_ref_orb(text)
self._reforb['x'] = data['x']
self._reforb['y'] = data['y']
def _get_new_sum(self):
self._summon = _np.array(self._get_values('Sum-Mon'), dtype=float)
text = 'Read at ' + _time.strftime('%d/%m/%Y %H:%M:%S\n',
_time.localtime(_time.time()))
self._label_getsts.setText(text)
def send_value(self):
"""Send new value."""
idxsel, namesel = list(), list()
for idx, wid in enumerate(self._bpm_sel.widgets):
name = self.BPM_NAMES[idx]
check = wid.findChild(QCheckBox)
if check.isChecked():
idxsel.append(idx)
namesel.append(name)
check.setChecked(False)
if not namesel:
return
if 'sum' in self.metric:
_av = self.CONV_POLY_MONIT1_2_MONIT[0, :]
_bv = self.CONV_POLY_MONIT1_2_MONIT[1, :]
allvals = self._spin_scl.value() * (self._summon - _bv) / _av
values = allvals[_np.array(idxsel)]
pvs = [b.substitute(propty=self.lim_sp[0]) for b in namesel]
else:
pvs, values = list(), list()
for lsp in self.lim_sp:
if not self._checks[lsp].isChecked():
continue
lval = self._spins[lsp].value()
plan = 'y' if 'y' in lsp.lower() else 'x'
metric = self.calc_intlk_metric(self._reforb[plan],
metric=self.metric)
allvals = _np.round(_np.array(metric) + lval)
allvals = allvals[_np.array(idxsel)]
values.extend(allvals)
pvs.extend([b.substitute(propty=lsp) for b in namesel])
delays = [
0.0,
] * len(pvs)
self._items_success = list()
self._items_fail = list()
conn = EpicsConnector(pvs, parent=self)
task_set = EpicsSetter(pvs, values, delays, parent=self)
task_sleep = EpicsWait([
None,
] * 10, wait_time=2.0, parent=self)
task_check = EpicsChecker(pvs, values, delays, parent=self)
task_check.itemChecked.connect(self._check_status)
dlg = ProgressDialog(
['Connecting...', 'Setting...', 'Waiting...', 'Checking...'],
[conn, task_set, task_sleep, task_check],
parent=self)
ret = dlg.exec_()
if ret == dlg.Rejected:
return
if self._items_fail:
report = ReportDialog(self._items_fail, self)
report.exec_()
return
@Slot(str, bool)
def _check_status(self, item, status):
if status:
self._items_success.append((item, True))
else:
self._items_fail.append(item)
class ImageRotationDialog(ExToolWindow):
def __init__(self, signal, axes, parent, plugin):
super(ImageRotationDialog, self).__init__(parent)
self.ui = parent
self.create_controls()
self.accepted.connect(self.ok)
self.rejected.connect(self.close_new)
self.signal = signal
self.plugin = plugin
self.new_out = None
self._connected_updates = False
if isinstance(axes, str):
axm = signal.signal.axes_manager
if axes.startswith("nav"):
axes = (axm._axes.index(axm.navigation_axes[0]),
axm._axes.index(axm.navigation_axes[1]))
elif axes.startswith("sig"):
axes = (axm._axes.index(axm.signal_axes[0]),
axm._axes.index(axm.signal_axes[1]))
self.axes = axes
self.setWindowTitle(tr("Rotate"))
# TODO: TAG: Functionality check
if not hasattr(signal.signal, 'events'):
self.gbo_preview.setVisible(False)
# TODO: Add dynamic rotation, e.g. one that rotates when source
# signal's data_changed event triggers
def connect(self):
# TODO: Don't have to con/dis those in gbo
self.opt_new.toggled.connect(self.close_new)
self.num_angle.valueChanged.connect(self.update)
self.chk_grid.toggled.connect(self.update)
self.num_grid.valueChanged.connect(self.update)
self.chk_reshape.toggled.connect(self.update)
self.opt_new.toggled.connect(self.update)
self.opt_replace.toggled.connect(self.update)
def disconnect(self):
self.num_angle.valueChanged.disconnect(self.update)
self.chk_grid.toggled.disconnect(self.update)
self.num_grid.valueChanged.disconnect(self.update)
self.chk_reshape.toggled.disconnect(self.update)
self.opt_new.toggled.disconnect(self.update)
self.opt_replace.toggled.disconnect(self.update)
def ok(self):
# Draw figure if not already done
# TODO: TAG: Functionality check
if not hasattr(self.signal.signal, 'events') or \
not self.gbo_preview.isChecked():
self.update()
angle = self.num_angle.value()
reshape = self.chk_reshape.isChecked()
self.plugin.record_code(
r"<p>.rotate_signal({0}, reshape={1}, axes={2})".format(
angle, reshape, self.axes))
# Clean up event connections
if self.new_out is not None:
self.connect_update_plot(self.new_out.signal, disconnect=True)
def close_new(self, value=False):
if self.new_out is not None and not value:
self.new_out.close()
self.new_out = None
self._connected_updates = False
def set_preview(self, value):
if not hasattr(self.signal.signal, 'events'):
return
if value:
self.connect()
self.update()
else:
self.disconnect()
self.close_new()
def _axes_in_nav(self):
axm = self.signal.signal.axes_manager
navidx = [axm._axes.index(ax) for ax in axm.navigation_axes]
if self.axes[0] in navidx:
return True
return False
def connect_update_plot(self, signal, disconnect=False):
if self._connected_updates != disconnect:
return # Nothing to do, prevent double connections
if self._axes_in_nav():
f = signal._plot.navigator_plot.update
else:
f = signal._plot.signal_plot.update
# TODO: TAG: Functionality check
if hasattr(signal, 'events') and hasattr(
signal.events, 'data_changed'):
if disconnect:
signal.events.data_changed.disconnect(f)
else:
signal.events.data_changed.connect(f, [])
self._connected_updates = not disconnect
def update(self):
angle = self.num_angle.value()
reshape = self.chk_reshape.isChecked()
if self.opt_new.isChecked():
if self.new_out is None:
out = None
else:
out = self.new_out.signal
elif self.opt_replace.isChecked():
out = self.signal.signal
else:
return # Indeterminate state, do nothing
s = self.plugin.rotate_signal(angle, self.signal.signal, record=False,
reshape=reshape, out=out, axes=self.axes)
if out is None:
s.metadata.General.title = self.signal.name + "[Rotated]"
s.plot()
self.connect_update_plot(s)
if (self.gbo_preview.isChecked() and self.opt_new.isChecked() and
self.new_out is None):
self.new_out = self.ui.lut_signalwrapper[s]
else:
s = out
if self.chk_grid.isChecked() is True:
pass # TODO: Draw grid
def create_controls(self):
"""
Create UI controls.
"""
vbox = QVBoxLayout()
form = QFormLayout()
self.num_angle = QDoubleSpinBox()
self.num_angle.setValue(0.0)
self.num_angle.setMinimum(-360)
self.num_angle.setMaximum(360)
form.addRow(tr("Angle:"), self.num_angle)
vbox.addLayout(form)
self.gbo_preview = QGroupBox(tr("Preview"))
self.gbo_preview.setCheckable(True)
self.gbo_preview.setChecked(False)
gbo_vbox = QVBoxLayout()
self.chk_grid = QCheckBox(tr("Grid"))
self.chk_grid.setChecked(False)
self.num_grid = QSpinBox()
self.num_grid.setValue(4)
self.num_grid.setMinimum(1)
self.num_grid.setEnabled(False)
self.chk_grid.toggled[bool].connect(self.num_grid.setEnabled)
gbo_vbox.addWidget(self.chk_grid)
gbo_vbox.addWidget(self.num_grid)
self.gbo_preview.setLayout(gbo_vbox)
vbox.addWidget(self.gbo_preview)
self.gbo_preview.toggled[bool].connect(self.set_preview)
self.gbo_output = QGroupBox(tr("Output"))
self.opt_new = QRadioButton(tr("New signal"))
self.opt_replace = QRadioButton(tr("In place"))
self.opt_new.setChecked(True)
gbo_vbox2 = QVBoxLayout()
gbo_vbox2.addWidget(self.opt_new)
gbo_vbox2.addWidget(self.opt_replace)
self.gbo_output.setLayout(gbo_vbox2)
vbox.addWidget(self.gbo_output)
self.chk_reshape = QCheckBox(tr("Resize to fit"))
self.chk_reshape.setChecked(False)
vbox.addWidget(self.chk_reshape)
self.btn_ok = QPushButton(tr("&OK"))
self.btn_ok.setDefault(True)
self.btn_ok.clicked.connect(self.accept)
self.btn_cancel = QPushButton(tr("&Cancel"))
self.btn_cancel.clicked.connect(self.reject)
hbox = QHBoxLayout()
hbox.addWidget(self.btn_ok)
hbox.addWidget(self.btn_cancel)
vbox.addLayout(hbox)
vbox.addStretch(1)
self.setLayout(vbox)
class ImageRotationDialog(ExToolWindow):
def __init__(self, signal, axes, parent, plugin):
super(ImageRotationDialog, self).__init__(parent)
self.ui = parent
self.create_controls()
self.accepted.connect(self.ok)
self.rejected.connect(self.close_new)
self.signal = signal
self.plugin = plugin
self.new_out = None
self._connected_updates = False
if isinstance(axes, str):
axm = signal.signal.axes_manager
if axes.startswith("nav"):
axes = (axm._axes.index(axm.navigation_axes[0]),
axm._axes.index(axm.navigation_axes[1]))
elif axes.startswith("sig"):
axes = (axm._axes.index(axm.signal_axes[0]),
axm._axes.index(axm.signal_axes[1]))
self.axes = axes
self.setWindowTitle(tr("Rotate"))
# TODO: TAG: Functionality check
if not hasattr(signal.signal, 'events'):
self.gbo_preview.setVisible(False)
# TODO: Add dynamic rotation, e.g. one that rotates when source
# signal's data_changed event triggers
def connect(self):
# TODO: Don't have to con/dis those in gbo
self.opt_new.toggled.connect(self.close_new)
self.num_angle.valueChanged.connect(self.update)
self.chk_grid.toggled.connect(self.update)
self.num_grid.valueChanged.connect(self.update)
self.chk_reshape.toggled.connect(self.update)
self.opt_new.toggled.connect(self.update)
self.opt_replace.toggled.connect(self.update)
def disconnect(self):
self.num_angle.valueChanged.disconnect(self.update)
self.chk_grid.toggled.disconnect(self.update)
self.num_grid.valueChanged.disconnect(self.update)
self.chk_reshape.toggled.disconnect(self.update)
self.opt_new.toggled.disconnect(self.update)
self.opt_replace.toggled.disconnect(self.update)
def ok(self):
# Draw figure if not already done
# TODO: TAG: Functionality check
if not hasattr(self.signal.signal, 'events') or \
not self.gbo_preview.isChecked():
self.update()
angle = self.num_angle.value()
reshape = self.chk_reshape.isChecked()
self.plugin.record_code(
r"<p>.rotate_signal({0}, reshape={1}, axes={2})".format(
angle, reshape, self.axes))
# Clean up event connections
if self.new_out is not None:
self.connect_update_plot(self.new_out.signal, disconnect=True)
def close_new(self, value=False):
if self.new_out is not None and not value:
self.new_out.close()
self.new_out = None
self._connected_updates = False
def set_preview(self, value):
if not hasattr(self.signal.signal, 'events'):
return
if value:
self.connect()
self.update()
else:
self.disconnect()
self.close_new()
def _axes_in_nav(self):
axm = self.signal.signal.axes_manager
navidx = [axm._axes.index(ax) for ax in axm.navigation_axes]
if self.axes[0] in navidx:
return True
return False
def connect_update_plot(self, signal, disconnect=False):
if self._connected_updates != disconnect:
return # Nothing to do, prevent double connections
if self._axes_in_nav():
f = signal._plot.navigator_plot.update
else:
f = signal._plot.signal_plot.update
# TODO: TAG: Functionality check
if hasattr(signal, 'events') and hasattr(signal.events,
'data_changed'):
if disconnect:
signal.events.data_changed.disconnect(f)
else:
signal.events.data_changed.connect(f, [])
self._connected_updates = not disconnect
def update(self):
angle = self.num_angle.value()
reshape = self.chk_reshape.isChecked()
if self.opt_new.isChecked():
if self.new_out is None:
out = None
else:
out = self.new_out.signal
elif self.opt_replace.isChecked():
out = self.signal.signal
else:
return # Indeterminate state, do nothing
s = self.plugin.rotate_signal(angle,
self.signal.signal,
record=False,
reshape=reshape,
out=out,
axes=self.axes)
if out is None:
s.metadata.General.title = self.signal.name + "[Rotated]"
s.plot()
self.connect_update_plot(s)
if (self.gbo_preview.isChecked() and self.opt_new.isChecked()
and self.new_out is None):
self.new_out = self.ui.lut_signalwrapper[s]
else:
s = out
if self.chk_grid.isChecked() is True:
pass # TODO: Draw grid
def create_controls(self):
"""
Create UI controls.
"""
vbox = QVBoxLayout()
form = QFormLayout()
self.num_angle = QDoubleSpinBox()
self.num_angle.setValue(0.0)
self.num_angle.setMinimum(-360)
self.num_angle.setMaximum(360)
form.addRow(tr("Angle:"), self.num_angle)
vbox.addLayout(form)
self.gbo_preview = QGroupBox(tr("Preview"))
self.gbo_preview.setCheckable(True)
self.gbo_preview.setChecked(False)
gbo_vbox = QVBoxLayout()
self.chk_grid = QCheckBox(tr("Grid"))
self.chk_grid.setChecked(False)
self.num_grid = QSpinBox()
self.num_grid.setValue(4)
self.num_grid.setMinimum(1)
self.num_grid.setEnabled(False)
self.chk_grid.toggled[bool].connect(self.num_grid.setEnabled)
gbo_vbox.addWidget(self.chk_grid)
gbo_vbox.addWidget(self.num_grid)
self.gbo_preview.setLayout(gbo_vbox)
vbox.addWidget(self.gbo_preview)
self.gbo_preview.toggled[bool].connect(self.set_preview)
self.gbo_output = QGroupBox(tr("Output"))
self.opt_new = QRadioButton(tr("New signal"))
self.opt_replace = QRadioButton(tr("In place"))
self.opt_new.setChecked(True)
gbo_vbox2 = QVBoxLayout()
gbo_vbox2.addWidget(self.opt_new)
gbo_vbox2.addWidget(self.opt_replace)
self.gbo_output.setLayout(gbo_vbox2)
vbox.addWidget(self.gbo_output)
self.chk_reshape = QCheckBox(tr("Resize to fit"))
self.chk_reshape.setChecked(False)
vbox.addWidget(self.chk_reshape)
self.btn_ok = QPushButton(tr("&OK"))
self.btn_ok.setDefault(True)
self.btn_ok.clicked.connect(self.accept)
self.btn_cancel = QPushButton(tr("&Cancel"))
self.btn_cancel.clicked.connect(self.reject)
hbox = QHBoxLayout()
hbox.addWidget(self.btn_ok)
hbox.addWidget(self.btn_cancel)
vbox.addLayout(hbox)
vbox.addStretch(1)
self.setLayout(vbox)
class StyleChooser(QWidget):
def __init__(self, line_style_set=STYLESET_DEFAULT):
QWidget.__init__(self)
self._style = PlotStyle("StyleChooser internal style")
self._styles = (STYLES["default"] if line_style_set not in STYLES else
STYLES[line_style_set])
self.setMinimumWidth(140)
self.setMaximumHeight(25)
layout = QHBoxLayout()
layout.setContentsMargins(0, 0, 0, 0)
layout.setSpacing(2)
self.line_chooser = QComboBox()
self.line_chooser.setToolTip("Select line style.")
for style in self._styles:
self.line_chooser.addItem(*style)
self.marker_chooser = QComboBox()
self.marker_chooser.setToolTip("Select marker style.")
for marker in MARKERS:
self.marker_chooser.addItem(*marker)
self.thickness_spinner = QDoubleSpinBox()
self.thickness_spinner.setToolTip("Line thickness")
self.thickness_spinner.setMinimum(0.1)
self.thickness_spinner.setDecimals(1)
self.thickness_spinner.setSingleStep(0.1)
self.size_spinner = QDoubleSpinBox()
self.size_spinner.setToolTip("Marker size")
self.size_spinner.setMinimum(0.1)
self.size_spinner.setDecimals(1)
self.size_spinner.setSingleStep(0.1)
# the text content of the spinner varies, but shouldn't push the control
# out of boundaries
self.line_chooser.setMinimumWidth(110)
layout.addWidget(self.line_chooser)
layout.addWidget(self.thickness_spinner)
layout.addWidget(self.marker_chooser)
layout.addWidget(self.size_spinner)
self.setLayout(layout)
self.line_chooser.currentIndexChanged.connect(self._updateStyle)
self.marker_chooser.currentIndexChanged.connect(self._updateStyle)
self.thickness_spinner.valueChanged.connect(self._updateStyle)
self.size_spinner.valueChanged.connect(self._updateStyle)
self._updateLineStyleAndMarker(
self._style.line_style,
self._style.marker,
self._style.width,
self._style.size,
)
self._layout = layout
def getItemSizes(self):
line_style_combo_width = self._layout.itemAt(0).sizeHint().width()
thickness_spinner_width = self._layout.itemAt(1).sizeHint().width()
marker_combo_width = self._layout.itemAt(2).sizeHint().width()
size_spinner_width = self._layout.itemAt(3).sizeHint().width()
return (
line_style_combo_width,
thickness_spinner_width,
marker_combo_width,
size_spinner_width,
)
def _findLineStyleIndex(self, line_style):
for index, style in enumerate(self._styles):
if style[1] == line_style:
return index
elif style[1] is None and line_style == "":
return index
return -1
def _findMarkerStyleIndex(self, marker):
for index, style in enumerate(MARKERS):
if style[1] == marker:
return index
elif style[1] is None and marker == "":
return index
return -1
def _updateLineStyleAndMarker(self, line_style, marker, thickness, size):
self.line_chooser.setCurrentIndex(self._findLineStyleIndex(line_style))
self.marker_chooser.setCurrentIndex(self._findMarkerStyleIndex(marker))
self.thickness_spinner.setValue(thickness)
self.size_spinner.setValue(size)
def _updateStyle(self):
self.marker_chooser.setEnabled(
self.line_chooser.currentText() != "Area")
line_style = self.line_chooser.itemData(
self.line_chooser.currentIndex())
marker_style = self.marker_chooser.itemData(
self.marker_chooser.currentIndex())
thickness = float(self.thickness_spinner.value())
size = float(self.size_spinner.value())
self._style.line_style = line_style
self._style.marker = marker_style
self._style.width = thickness
self._style.size = size
def setStyle(self, style):
"""@type style: PlotStyle"""
self._style.copyStyleFrom(style)
self._updateLineStyleAndMarker(style.line_style, style.marker,
style.width, style.size)
def getStyle(self):
"""@rtype: PlotStyle"""
style = PlotStyle("Generated style from StyleChooser")
style.copyStyleFrom(self._style)
return style
def createLabelLayout(self, layout=None):
if layout is None:
layout = QHBoxLayout()
titles = ["Line style", "Width", "Marker style", "Size"]
sizes = self.getItemSizes()
for title, size in zip(titles, sizes):
label = QLabel(title)
label.setFixedWidth(size)
layout.addWidget(label)
return layout
class EpochDialog(QDialog):
def __init__(self, parent, events):
super().__init__(parent)
self.setWindowTitle("Create Epochs")
grid = QGridLayout(self)
label = QLabel("Events:")
label.setAlignment(Qt.AlignTop)
grid.addWidget(label, 0, 0, 1, 1)
self.events = QListWidget()
self.events.insertItems(0, unique(events[:, 2]).astype(str))
self.events.setSelectionMode(QListWidget.ExtendedSelection)
grid.addWidget(self.events, 0, 1, 1, 2)
grid.addWidget(QLabel("Interval around events:"), 1, 0, 1, 1)
self.tmin = QDoubleSpinBox()
self.tmin.setMinimum(-10000)
self.tmin.setValue(-0.2)
self.tmin.setSingleStep(0.1)
self.tmin.setAlignment(Qt.AlignRight)
self.tmax = QDoubleSpinBox()
self.tmax.setMinimum(-10000)
self.tmax.setValue(0.5)
self.tmax.setSingleStep(0.1)
self.tmax.setAlignment(Qt.AlignRight)
grid.addWidget(self.tmin, 1, 1, 1, 1)
grid.addWidget(self.tmax, 1, 2, 1, 1)
self.baseline = QCheckBox("Baseline Correction:")
self.baseline.setChecked(True)
self.baseline.stateChanged.connect(self.toggle_baseline)
grid.addWidget(self.baseline, 2, 0, 1, 1)
self.a = QDoubleSpinBox()
self.a.setMinimum(-10000)
self.a.setValue(-0.2)
self.a.setSingleStep(0.1)
self.a.setAlignment(Qt.AlignRight)
self.b = QDoubleSpinBox()
self.b.setMinimum(-10000)
self.b.setValue(0)
self.b.setSingleStep(0.1)
self.b.setAlignment(Qt.AlignRight)
grid.addWidget(self.a, 2, 1, 1, 1)
grid.addWidget(self.b, 2, 2, 1, 1)
self.buttonbox = QDialogButtonBox(QDialogButtonBox.Ok
| QDialogButtonBox.Cancel)
self.buttonbox.accepted.connect(self.accept)
self.buttonbox.rejected.connect(self.reject)
grid.addWidget(self.buttonbox, 3, 0, 1, -1)
self.events.itemSelectionChanged.connect(self.toggle_ok)
self.toggle_ok()
grid.setSizeConstraint(QGridLayout.SetFixedSize)
@Slot()
def toggle_ok(self):
if self.events.selectedItems():
self.buttonbox.button(QDialogButtonBox.Ok).setEnabled(True)
else:
self.buttonbox.button(QDialogButtonBox.Ok).setEnabled(False)
@Slot()
def toggle_baseline(self):
if self.baseline.isChecked():
self.a.setEnabled(True)
self.b.setEnabled(True)
else:
self.a.setEnabled(False)
self.b.setEnabled(False)
class DepthGUI(QMainWindow):
def __init__(self):
super(DepthGUI, self).__init__()
self.display_string = None
# Serial port config
self.ser = serial.Serial()
self.ser.baudrate = 19200
self.depth_stream = None
self._prev_port = None
self.setup_ui()
def setup_ui(self):
self.setWindowTitle('Neuroport DBS - Electrodes Depth')
self.setWindowFlags(Qt.FramelessWindowHint)
self.move(WINDOWDIMS_DEPTH[0], WINDOWDIMS_DEPTH[1])
self.setFixedSize(WINDOWDIMS_DEPTH[2], WINDOWDIMS_DEPTH[3])
self.show()
self.plot_widget = QWidget()
self.setCentralWidget(self.plot_widget)
# define Qt GUI elements
v_layout = QVBoxLayout()
v_layout.setSpacing(0)
v_layout.setContentsMargins(10, 0, 10, 10)
h_layout = QHBoxLayout()
self.comboBox_com_port = QComboBox()
h_layout.addWidget(self.comboBox_com_port)
self.pushButton_open = QPushButton("Open")
h_layout.addWidget(self.pushButton_open)
h_layout.addStretch()
self.label_offset = QLabel("Offset: ")
h_layout.addWidget(self.label_offset)
self.doubleSpinBox_offset = QDoubleSpinBox()
self.doubleSpinBox_offset.setMinimum(-100.00)
self.doubleSpinBox_offset.setMaximum(100.00)
self.doubleSpinBox_offset.setSingleStep(1.00)
self.doubleSpinBox_offset.setDecimals(2)
self.doubleSpinBox_offset.setValue(-10.00)
self.doubleSpinBox_offset.setFixedWidth(60)
h_layout.addWidget(self.doubleSpinBox_offset)
h_layout.addStretch()
h_layout.addWidget(QLabel("Stream to :"))
self.chk_NSP = QCheckBox("NSP")
self.chk_NSP.setChecked(True)
h_layout.addWidget(self.chk_NSP)
h_layout.addSpacing(5)
self.chk_LSL = QCheckBox("LSL")
self.chk_LSL.clicked.connect(self.on_chk_LSL_clicked)
self.chk_LSL.click(
) # default is enabled, click call to trigger LSL stream creation.
h_layout.addWidget(self.chk_LSL)
h_layout.addSpacing(5)
send_btn = QPushButton("Send")
send_btn.clicked.connect(self.send)
h_layout.addWidget(send_btn)
h_layout.addSpacing(5)
quit_btn = QPushButton('X')
quit_btn.setMaximumWidth(20)
quit_btn.clicked.connect(QApplication.instance().quit)
quit_btn.setStyleSheet("QPushButton { color: white; "
"background-color : red; "
"border-color : red; "
"border-width: 2px}")
h_layout.addWidget(quit_btn)
v_layout.addLayout(h_layout)
# define Qt GUI elements
# add a frame for the LCD numbers
self.lcd_frame = QFrame()
self.lcd_frame.setFrameShape(1)
lcd_layout = QGridLayout()
self.lcd_frame.setLayout(lcd_layout)
# RAW reading from DDU
self.raw_ddu = QLCDNumber()
self.raw_ddu.setDigitCount(7)
self.raw_ddu.setFrameShape(0)
self.raw_ddu.setSmallDecimalPoint(True)
self.raw_ddu.setFixedHeight(50)
self.raw_ddu.display("{0:.3f}".format(0))
lcd_layout.addWidget(self.raw_ddu, 0, 3, 2, 3)
self.offset_ddu = QLCDNumber()
self.offset_ddu.setDigitCount(7)
self.offset_ddu.setFixedHeight(150)
self.offset_ddu.display("{0:.3f}".format(-10))
self.offset_ddu.setFrameShape(0)
lcd_layout.addWidget(self.offset_ddu, 2, 0, 5, 6)
v_layout.addWidget(self.lcd_frame)
self.plot_widget.setLayout(v_layout)
# Populate control panel items
for port in serial.tools.list_ports.comports():
self.comboBox_com_port.addItem(port.device)
self.comboBox_com_port.addItem("cbsdk playback")
# Connect signals & slots
self.pushButton_open.clicked.connect(self.on_open_clicked)
self.comboBox_com_port.currentIndexChanged.connect(
self.on_comboBox_com_port_changed)
# TODO: Add signal for comboBox_com_port --> when cbsdk playback, uncheck NSP then re-open connection.
def on_chk_LSL_clicked(self, state):
print(f"LSL clicked state: {state}")
if self.chk_LSL.isChecked():
outlet_info = pylsl.StreamInfo(name='electrode_depth',
type='depth',
channel_count=1,
nominal_srate=pylsl.IRREGULAR_RATE,
channel_format=pylsl.cf_float32,
source_id='depth1214')
self.depth_stream = pylsl.StreamOutlet(outlet_info)
else:
self.depth_stream = None
def _do_close(self, from_port):
if from_port == "cbsdk playback":
CbSdkConnection().disconnect()
else:
self.ser.close()
self.pushButton_open.setText("Open")
def on_comboBox_com_port_changed(self, new_ix):
# If a connection was already open, close it before proceeding.
if self.pushButton_open.text() == "Close":
self._do_close(self._prev_port)
# at this point the Open/Close pushbutton should show: Open
# we will only enable/disable the Send to NSP button to leave the current checked status.
# The default should be checked.
if self.comboBox_com_port.currentText() == "cbsdk playback":
# If switching _to_ cbsdk playback, disable sending out comments.
self.chk_NSP.setEnabled(False)
elif self._prev_port == "cbsdk playback":
# If switching _from_ cbsdk playback, re-enable sending out comments.
self.chk_NSP.setEnabled(True)
self._prev_port = self.comboBox_com_port.currentText()
def on_open_clicked(self):
com_port = self.comboBox_com_port.currentText()
cmd_text = self.pushButton_open.text()
if cmd_text == 'Open':
if com_port == "cbsdk playback":
CbSdkConnection().connect()
CbSdkConnection().cbsdk_config = {
'reset': True,
'get_events': False,
'get_comments': True,
'buffer_parameter': {
'comment_length': 10
}
}
self.pushButton_open.setText("Close")
else:
if self.chk_NSP.isEnabled() and self.chk_NSP.isChecked():
CbSdkConnection().connect()
CbSdkConnection().cbsdk_config = {
'reset': True,
'get_events': False,
'get_comments': False
}
if not self.ser.is_open:
self.ser.port = com_port
try:
self.ser.open() # TODO: Add timeout; Add error.
self.ser.write('AXON+\r'.encode())
except serial.serialutil.SerialException:
print("Could not open serial port")
finally:
self.pushButton_open.setText(
"Close" if self.ser.is_open else "Open")
else:
self._do_close(com_port)
def update(self):
# Added new_value handling for playback if we ever want to post-process depth
# on previously recorded sessions.
new_value = False
out_value = None
if self.comboBox_com_port.currentText() == "cbsdk playback":
cbsdk_conn = CbSdkConnection()
if cbsdk_conn.is_connected:
comments = cbsdk_conn.get_comments()
if comments:
comment_strings = [x[1].decode('utf8') for x in comments]
else:
comment_strings = ""
dtts = []
for comm_str in comment_strings:
if 'DTT:' in comm_str:
dtts.append(float(comm_str[4:]))
if len(dtts) > 0:
out_value = dtts[-1]
new_value = True
self.offset_ddu.display("{0:.3f}".format(out_value))
offset = self.doubleSpinBox_offset.value()
self.raw_ddu.display("{0:.3f}".format(out_value - offset))
elif self.ser.is_open:
in_str = self.ser.readline().decode('utf-8').strip()
if in_str:
try:
in_value = float(in_str)
# in_value /= DDUSCALEFACTOR # Uncomment this for FHC DDU V2.
self.raw_ddu.display("{0:.3f}".format(in_value))
out_value = in_value + self.doubleSpinBox_offset.value()
display_string = "{0:.3f}".format(out_value)
self.offset_ddu.display(display_string)
# Check if new value
if display_string != self.display_string:
new_value = True
self.display_string = display_string
# Push to NSP
cbsdk_conn = CbSdkConnection()
if cbsdk_conn.is_connected:
if self.chk_NSP.isChecked() and self.chk_NSP.isEnabled(
) and new_value:
cbsdk_conn.set_comments("DTT:" + display_string)
else:
# try connecting if not connected but button is active
if self.chk_NSP.isChecked() and self.chk_NSP.isEnabled(
):
cbsdk_conn.connect()
cbsdk_conn.cbsdk_config = {
'reset': True,
'get_events': False,
'get_comments': False
}
# set button to connection status
self.chk_NSP.setChecked(cbsdk_conn.is_connected)
except ValueError:
print("DDU result: {}".format(in_str))
# Push to LSL
if self.depth_stream is not None and new_value:
self.depth_stream.push_sample([out_value])
def send(self):
self.display_string = None # make sure the update function runs
self.update()