import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
import CURefPy
import obspy
import copy
# Initialize ASDF dataset
# dset=quakedbase.quakeASDF('/scratch/summit/life9360/ALASKA_work/ASDF_data/ref_Alaska.h5')
dset = quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
dset.cat = quakedbase.obspy.read_events('test.ml')
staid = 'TA.C23K'
st = dset.waveforms[staid]['body_ev_00001']
stla, elev, stlo = dset.waveforms[staid].coordinates.values()
porigin = dset.cat[0].preferred_origin()
evlo = porigin.longitude
evla = porigin.latitude
evdp = porigin.depth
for tr in st:
tr.stats.sac = obspy.core.util.attribdict.AttribDict()
tr.stats.sac['evlo'] = evlo
tr.stats.sac['evla'] = evla
tr.stats.sac['evdp'] = evdp
tr.stats.sac['stlo'] = stlo
tr.stats.sac['stla'] = stla
inrefparam = CURefPy.InputRefparam()
refTr = CURefPy.RFTrace()
refTr.get_data(Ztr=st.select(component='Z')[0],
RTtr=st.select(component=inrefparam.reftype)[0],
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
# Initialize ASDF dataset
# dset1=quakedbase.quakeASDF('/scratch/summit/life9360/ALASKA_work/ASDF_data/ref_Alaska_002.h5')
#
# # dset1
# dset1.copy_asdf('/scratch/summit/life9360/ALASKA_work/ASDF_data/debug_AK.BESE.h5', 'AK', 'BESE')
dset2=quakedbase.quakeASDF('/scratch/summit/life9360/ALASKA_work/ASDF_data/debug_AK.BESE.h5')
# dset=quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset.cat = quakedbase.obspy.read_events('test.ml')
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# Getting station information
# dset.get_stations(channel='BH*', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# Downloading data
# t1=timeit.default_timer()
# # st=dset.get_body_waveforms()
# dset.read_body_waveforms_DMT_rtz(datadir='/scratch/summit/life9360/ALASKA_work/p_wave_19910101_20170831')
# t2=timeit.default_timer()
# print t2-t1, 'sec'
#
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
# Initialize ASDF dataset
dset=quakedbase.quakeASDF('/work1/leon/ALASKA_work_20180808_old/ASDF_data/ref_Alaska_hs_bk.h5')
# dset.add_quakeml('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset=quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset.cat = quakedbase.obspy.read_events('test.ml')
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# Getting station information
# dset.get_stations(channel='BH*', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# Downloading data
# t1=timeit.default_timer()
# # st=dset.get_body_waveforms()
# dset.read_body_waveforms_DMT_rtz(datadir='/scratch/summit/life9360/ALASKA_work/p_wave_19910101_20170831')
# t2=timeit.default_timer()
# print t2-t1, 'sec'
#
# # Computing receiver function
# dset.compute_ref(walltimeinhours=135., startind=78)
# dset.compute_ref(walltimeinhours=150, startind=92)
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
# Initialize ASDF dataset
# dset1=quakedbase.quakeASDF('/scratch/summit/life9360/ALASKA_work/ASDF_data/ref_Alaska_002.h5')
#
# # dset1
# dset1.copy_asdf('/scratch/summit/life9360/ALASKA_work/ASDF_data/debug_AK.BESE.h5', 'AK', 'BESE')
dset2 = quakedbase.quakeASDF(
'/scratch/summit/life9360/ALASKA_work/ASDF_data/debug_AK.BESE.h5')
# dset=quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset.cat = quakedbase.obspy.read_events('test.ml')
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# Getting station information
# dset.get_stations(channel='BH*', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# Downloading data
# t1=timeit.default_timer()
# # st=dset.get_body_waveforms()
# dset.read_body_waveforms_DMT_rtz(datadir='/scratch/summit/life9360/ALASKA_work/p_wave_19910101_20170831')
# t2=timeit.default_timer()
# print t2-t1, 'sec'
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
# Initialize ASDF dataset
dset = quakedbase.quakeASDF(
'/work1/leon/ALASKA_work_20180808_old/ASDF_data/ref_Alaska_hs_bk.h5')
# dset.add_quakeml('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset=quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# dset.cat = quakedbase.obspy.read_events('test.ml')
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# Getting station information
# dset.get_stations(channel='BH*', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# Downloading data
# t1=timeit.default_timer()
# # st=dset.get_body_waveforms()
# dset.read_body_waveforms_DMT_rtz(datadir='/scratch/summit/life9360/ALASKA_work/p_wave_19910101_20170831')
# t2=timeit.default_timer()
# print t2-t1, 'sec'
#
# # Computing receiver function
# dset.compute_ref(walltimeinhours=135., startind=78)
import quakedbase
import numpy as np
import pyaftan
dset = quakedbase.quakeASDF('/scratch/summit/life9360/WUS_quake.h5')
# dset.get_events(startdate='2005-1-01', enddate='2011-12-31', Mmin=5.5, magnitudetype='MS')
# dset.get_stations(startdate='2005-1-01', enddate='2011-12-31', channel='LHZ', network='TA,US,IU,CI,AZ,BK,NN,UU' ,
# minlatitude=25.0, maxlatitude=50.0, minlongitude=-130.0, maxlongitude=-100.0)
# dset.get_surf_waveforms_mp(outdir='/work3/leon/downloaded_waveforms', subsize=1000, deletemseed=True, nprocess=6, snumb=1930)
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# # Getting station information
# dset.get_stations(channel='LHZ', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# # Downloading data
# t1=timeit.default_timer()
# dset.read_surf_waveforms_DMT(datadir='/scratch/summit/life9360/ALASKA_work/surf_19950101_20170831', verbose=False)
# dset.quake_prephp(outdir='/scratch/summit/life9360/WUS_quake_working_dir/pre_disp')
# inftan = pyaftan.InputFtanParam()
# inftan.tmax = 100.
# inftan.tmin = 5.
# dset.quake_aftan(prephdir='/scratch/summit/life9360/WUS_quake_working_dir/pre_disp_R', inftan=inftan)
# dset.interp_disp(verbose=True)
# dset.quake_get_field()
import eikonaltomo
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
import pyaftan
#------------------------------
# Initialize ASDF dataset
#------------------------------
dset = quakedbase.quakeASDF('/work1/leon/US_work/ASDF_data/USCON_TA.h5')
# dset.copy_catalog_fromasdf(inasdffname = '/work1/leon/ALASKA_work/ASDF_data/surf_Alaska_Love.h5_cat_inv')
#------------------------------
# Retrieving earthquake catalog
#------------------------------
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20180831
# dset.get_events(startdate='2017-09-01', enddate='2018-04-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20190218
# dset.get_events(startdate='2018-05-01', enddate='2018-10-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
#------------------------------
# Getting station information
#------------------------------
# # # dset.get_stations(channel='LHZ', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
#------------------------------
# Download/Read data
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
# Initialize ASDF dataset
dset=quakedbase.quakeASDF('../ref_AK.FID.h5')
# # # # Retrieving earthquake catalog
# dset.get_events(startdate='2010-07-26', enddate='2016-12-31', Mmin=5.5, magnitudetype='mb', add2dbase=True)
# # # # # # # Getting station information
# dset.get_stations(channel='BH*', station='FID', network='AK')
# # # # # # Downloading data
# # # # t1=timeit.default_timer()
# st=dset.get_body_waveforms()
# st=dset.get_body_waveforms_mp( outdir='./downloaded_P', verbose=False, nprocess=6)
# t2=timeit.default_timer()
# print t2-t1, 'sec'
#
# # Computing receiver function
# dset.compute_ref()
# dset.compute_ref_mp(outdir='/work3/leon/ref_working', verbose=True, nprocess=4)
# try: del dset.auxiliary_data.RefRHS
# except: pass
#
# # Harmonic analysis
# dset.read_quakeml('U15A_cat.ml')
# dset.harmonic_stripping(outdir='../test_ref_working')
# dset.harmonic_stripping()
# t2=timeit.default_timer()
# print t2-t1, 'sec'
# dset.plot_ref(network='AE', station='U15A', phase='P', datatype='RefRHS')
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
import pyaftan
#------------------------------
# Initialize ASDF dataset
#------------------------------
dset = quakedbase.quakeASDF('/work1/leon/ALASKA_work/ASDF_data/surf_Alaska.h5')
# # # dset.add_quakeml('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# # # print dset.events[0]
#------------------------------
# Retrieving earthquake catalog
#------------------------------
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20180831
# dset.get_events(startdate='2017-09-01', enddate='2018-04-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20190218
# dset.get_events(startdate='2018-05-01', enddate='2018-10-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
#------------------------------
# Getting station information
#------------------------------
# # # dset.get_stations(channel='LHZ', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
#------------------------------
import quakedbase
import numpy as np
import pyaftan
dset=quakedbase.quakeASDF('/scratch/summit/life9360/WUS_quake.h5')
# dset.get_events(startdate='2005-1-01', enddate='2011-12-31', Mmin=5.5, magnitudetype='MS')
# dset.get_stations(startdate='2005-1-01', enddate='2011-12-31', channel='LHZ', network='TA,US,IU,CI,AZ,BK,NN,UU' ,
# minlatitude=25.0, maxlatitude=50.0, minlongitude=-130.0, maxlongitude=-100.0)
# dset.get_surf_waveforms_mp(outdir='/work3/leon/downloaded_waveforms', subsize=1000, deletemseed=True, nprocess=6, snumb=1930)
# print dset.events[0]
# Retrieving earthquake catalog
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# # Getting station information
# dset.get_stations(channel='LHZ', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
# # Downloading data
# t1=timeit.default_timer()
# dset.read_surf_waveforms_DMT(datadir='/scratch/summit/life9360/ALASKA_work/surf_19950101_20170831', verbose=False)
# dset.quake_prephp(outdir='/scratch/summit/life9360/WUS_quake_working_dir/pre_disp')
# inftan = pyaftan.InputFtanParam()
# inftan.tmax = 100.
# inftan.tmin = 5.
# dset.quake_aftan(prephdir='/scratch/summit/life9360/WUS_quake_working_dir/pre_disp_R', inftan=inftan)
# dset.interp_disp(verbose=True)
# dset.quake_get_field()
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
import pyaftan
#------------------------------
# Initialize ASDF dataset
#------------------------------
dset = quakedbase.quakeASDF('/work1/leon/ALASKA_work/ASDF_data/surf_Alaska.h5')
# # # dset.add_quakeml('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
# # # print dset.events[0]
#------------------------------
# Retrieving earthquake catalog
#------------------------------
# ISC catalog
# dset.get_events(startdate='1991-01-01', enddate='2015-02-01', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog
# dset.get_events(startdate='1991-01-01', enddate='2017-08-31', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20180831
# dset.get_events(startdate='2017-09-01', enddate='2018-04-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
# gcmt catalog, updated on 20190218
# dset.get_events(startdate='2018-05-01', enddate='2018-10-30', Mmin=5.5, magnitudetype='mb', gcmt=True)
#------------------------------
# Getting station information
#------------------------------
# # # dset.get_stations(channel='LHZ', minlatitude=52., maxlatitude=72.5, minlongitude=-172., maxlongitude=-122.)
#------------------------------
import quakedbase
import numpy as np
import timeit
import matplotlib.pyplot as plt
import CURefPy
import obspy
import copy
# Initialize ASDF dataset
# dset=quakedbase.quakeASDF('/scratch/summit/life9360/ALASKA_work/ASDF_data/ref_Alaska.h5')
dset=quakedbase.quakeASDF('ref_Alaska.h5')
# dset.cat = quakedbase.obspy.read_events('/scratch/summit/life9360/ALASKA_work/quakeml/alaska_2017_aug.ml')
dset.cat= quakedbase.obspy.read_events('test.ml')
staid = 'TA.C23K'
st = dset.waveforms[staid]['body_ev_00001']
stla, elev, stlo = dset.waveforms[staid].coordinates.values()
porigin = dset.cat[0].preferred_origin()
evlo = porigin.longitude
evla = porigin.latitude
evdp = porigin.depth
for tr in st:
tr.stats.sac = obspy.core.util.attribdict.AttribDict()
tr.stats.sac['evlo']= evlo
tr.stats.sac['evla']= evla
tr.stats.sac['evdp']= evdp
tr.stats.sac['stlo']= stlo
tr.stats.sac['stla']= stla
inrefparam = CURefPy.InputRefparam()
refTr = CURefPy.RFTrace()
refTr.get_data(Ztr=st.select(component='Z')[0], RTtr=st.select(component=inrefparam.reftype)[0], tbeg=inrefparam.tbeg, tend=inrefparam.tend)
refTr.IterDeconv( tdel=inrefparam.tdel, f0 = inrefparam.f0, niter=inrefparam.niter, minderr=inrefparam.minderr, phase='P' )