def test_tree_pickle(self):
a = IntervalTree()
for ichr in range(5):
for i in range(10, 100, 6):
f = Feature(i -4, i + 4, strand=1, chr=ichr)
a.insert(f)
a.dump('a.pkl')
b = IntervalTree()
b.load('a.pkl')
for ichr in range(5):
for i in range(10, 100, 6):
f = Feature(i -4, i + 4, strand=1, chr=ichr)
af = sorted(a.find(f), key=operator.attrgetter('start'))
bf = sorted(b.find(f), key=operator.attrgetter('start'))
assert len(bf) > 0
self.assertEqual(len(af), len(bf))
self.assertEqual(af[0].start, bf[0].start)
self.assertEqual(af[-1].start, bf[-1].start)
def test_tree_pickle(self):
a = IntervalTree()
for ichr in range(5):
for i in range(10, 100, 6):
f = Interval(i - 4, i + 4)
a.insert(f)
a.dump('a.pkl')
b = IntervalTree()
b.load('a.pkl')
for ichr in range(5):
for i in range(10, 100, 6):
f = Interval(i - 4, i + 4)
af = sorted(a.find(f), key=operator.attrgetter('start'))
bf = sorted(b.find(f), key=operator.attrgetter('start'))
assert len(bf) > 0
self.assertEqual(len(af), len(bf))
self.assertEqual(af[0].start, bf[0].start)
self.assertEqual(af[-1].start, bf[-1].start)
