def altaz(self):
'''
outputs RM data from altaz calculation
Returns
-------
tuple:
array[float]: parallel B field array
array[float]: RM data
array[float]: RM error data
'''
self.RMs = {}
self.dRMs = {}
self.B_paras = {}
self.TEC = {}
self.dTEC = {}
alt_src, az_src = self._hp_arr()
zen_src , _ = hp.pix2ang(self.nside, np.arange(self.npix))
az_src = np.degrees(az_src)
zen_src = np.degrees(zen_src)
for uday in self.day_groups:
group = self.day_groups[uday]
time_strs = [item.split(' ')[1] for item in group]
UTs_dec = []
for time_str in time_strs:
Hr, Min, Sec = [float(x) for x in time_str.split(':')]
dec_hour = Hr + Min / 60. + Sec / 3600.
UTs_dec.append(dec_hour)
year, month, day = [int(x) for x in uday.split('-')]
tec_a, rms_a, ion_height, TEC = self.ionex_data(year, month, day)
tec_hp = itp.ionex2healpix(tec_a, UTs_dec, TEC['lat'], TEC['lon'])
rms_hp = itp.ionex2healpix(rms_a, UTs_dec, TEC['lat'], TEC['lon'])
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(self.lat_str,
self.lon_str,
az_src, zen_src,
ion_height)
#XXX B_para calculated per DAY
B_para = phys.B_IGRF(year, month, day,
coord_lat, coord_lon,
ion_height, az_punct, zen_punct)
RMs = []
dRMs = []
for ui,UT in enumerate(UTs_dec):
TEC_path, RMS_TEC_path = itp.get_los_tec(tec_hp[ui], rms_hp[ui],
coord_lat, coord_lon,
zen_punct)
RM_ut = phys.RotationMeasure(TEC_path, B_para)
dRM_ut = phys.RotationMeasure(RMS_TEC_path, B_para)
RMs.append(RM_ut)
dRMs.append(dRM_ut)
self.RMs.update({key:RMs[ti] for ti, key in enumerate(group)})
self.dRMs.update({key:dRMs[ti] for ti, key in enumerate(group)})
self.B_paras[uday] = B_para
self.TEC.update({key:tec_hp[ti] for ti,key in enumerate(group)})
self.dTEC.update({key:rms_hp[ti] for ti,key in enumerate(group)})
def altaz(self):
'''
outputs RM data from altaz calculation
Returns
-------
tuple:
array[float]: parallel B field array
array[float]: RM data
array[float]: RM error data
'''
rm_s = []
drm_s = []
b_para_s = []
alt_src, az_src = self._hp_arr()
zen_src = 90. - alt_src
for date in self.times:
date_str, _, _ = str(date).partition('T')
RM_dir = self.make_rm_dir(date_str)
year, month, day = map(int, date_str.split('-'))
tec_hp, rms_hp, ion_height = self.ionex_data(year, month, day)
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(
self.lat_str, self.lon_str, az_src, zen_src, ion_height)
#XXX B_para calculated per DAY
B_para = phys.B_IGRF(year, month, day, coord_lat, coord_lon,
ion_height, az_punct, zen_punct)
RMs = []
dRMs = []
for ui, UT in enumerate(self.UTs):
hour = utils.std_hour(UT)
radec_file = os.path.join(RM_dir,
'radec{hour}.txt'.format(hour=hour))
utils.write_radec(UT, radec_file, alt_src, az_src, date_str,
self.location)
#UTs are integer distances apart. Would an enumeration be better?
TEC_path, RMS_TEC_path = itp.get_los_tec(
tec_hp[ui], rms_hp[ui], coord_lat, coord_lon, zen_punct)
new_file = os.path.join(RM_dir,
'IonRM{hour}.txt'.format(hour=hour))
utils.write_RM(hour, new_file, B_para, TEC_path, RMS_TEC_path)
_, _, _, RM_ut, dRM_ut = np.loadtxt(new_file, unpack=True)
RMs.append(RM_ut)
dRMs.append(dRM_ut)
rm_s.append(RMs)
drm_s.append(dRMs)
b_para_s.append(B_para)
self.RMs = np.array(rm_s)
self.dRMs = np.array(drm_s)
self.B_paras = np.array(b_para_s)
def calc_ionRIME_rm(self, verbose=False):
# angle logic
hpxidx = np.arange(self.npix)
theta, phi = hp.pix2ang(self.nside, hpxidx)
R = hp.rotator.Rotator(rot=[0,-120.712])
zen, az = R(theta, phi)
az[az < 0] += 2. * np.pi # az = -az
zen_src = np.degrees(zen)
az_src = np.degrees(az)
# setup storage
self.RMs = {}
self.dRMs = {}
self.B_paras = {}
self.TEC = {}
self.dTEC = {}
for uday in self.day_groups:
# time logic
group = self.day_groups[uday]
time_strs = [item.split(' ')[1] for item in group]
UTs_dec = []
for time_str in time_strs:
Hr, Min, Sec = [float(x) for x in time_str.split(':')]
dec_hour = Hr + Min / 60. + Sec / 3600.
UTs_dec.append(dec_hour)
year, month, day = [int(x) for x in uday.split('-')]
tec_a, rms_a, ion_height, TEC = self.ionex_data(year, month, day)
tec_hp = itp.ionex2healpix(tec_a, UTs_dec, TEC['lat'], TEC['lon'])
rms_hp = itp.ionex2healpix(rms_a, UTs_dec, TEC['lat'], TEC['lon'])
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(self.lat_str,
self.lon_str,
az_src, zen_src,
ion_height)
#XXX B_para calculated per DAY
B_para = phys.B_IGRF(year, month, day,
coord_lat, coord_lon,
ion_height, az_punct, zen_punct)
RMs = []
dRMs = []
for ui,UT in enumerate(UTs_dec):
TEC_path, RMS_TEC_path = itp.get_los_tec(tec_hp[ui], rms_hp[ui],
coord_lat, coord_lon,
zen_punct)
RM_ut = phys.RotationMeasure(TEC_path, B_para)
dRM_ut = phys.RotationMeasure(RMS_TEC_path, B_para)
RMs.append(RM_ut)
dRMs.append(dRM_ut)
self.RMs.update({key:RMs[ti] for ti, key in enumerate(group)})
self.dRMs.update({key:dRMs[ti] for ti, key in enumerate(group)})
self.B_paras[uday] = B_para
self.TEC.update({key:tec_hp[ti] for ti,key in enumerate(group)})
self.dTEC.update({key:rms_hp[ti] for ti,key in enumerate(group)})
def altaz(self):
"""
outputs RM data from altaz calculation
Returns
-------
tuple:
array[float]: parallel B field array
array[float]: RM data
array[float]: RM error data
"""
rm_s = []
drm_s = []
b_para_s = []
alt_src, az_src = self._hp_arr()
zen_src = 90.0 - alt_src
for date in self.times:
date_str, _, _ = str(date).partition("T")
RM_dir = self.make_rm_dir(date_str)
year, month, day = map(int, date_str.split("-"))
tec_hp, rms_hp, ion_height = self.ionex_data(year, month, day)
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(
self.lat_str, self.lon_str, az_src, zen_src, ion_height
)
# XXX B_para calculated per DAY
B_para = phys.B_IGRF(year, month, day, coord_lat, coord_lon, ion_height, az_punct, zen_punct)
RMs = []
dRMs = []
for UT in self.UTs:
hour = utils.std_hour(UT)
radec_file = os.path.join(RM_dir, "radec{hour}.txt".format(hour=hour))
utils.write_radec(UT, radec_file, alt_src, az_src, date_str, self.location)
TEC_path, RMS_TEC_path = itp.get_los_tec(tec_hp[UT], rms_hp[UT], coord_lat, coord_lon, zen_punct)
new_file = os.path.join(RM_dir, "IonRM{hour}.txt".format(hour=hour))
utils.write_RM(hour, new_file, B_para, TEC_path, RMS_TEC_path)
_, _, _, RM_ut, dRM_ut = np.loadtxt(new_file, unpack=True)
RMs.append(RM_ut)
dRMs.append(dRM_ut)
rm_s.append(RMs)
drm_s.append(dRMs)
b_para_s.append(B_para)
self.RMs = np.array(rm_s)
self.dRMs = np.array(drm_s)
self.B_paras = np.array(b_para_s)
def _test_ionosphere_map(date_str='2004-05-19T00:00:00'):
# date_str = '2004-05-19T00:00:00'
lat_str = '30d43m17.5ss'
lon_str = '21d25m41.9se'
year, month, day = date_str.split('T')[0].split('-')
tec_hp, rms_hp, ion_height = inx.IONEX_data(year, month, day, verbose=False)
nside_in = 2**4
npix_in = hp.nside2npix(nside_in)
hpxidx = np.arange(npix_in)
za, az = hp.pix2ang(nside_in, hpxidx)
lat, lon, az_p, za_p = phys.ipp(lat_str, lon_str,
np.degrees(az), np.degrees(za),
ion_height)
B_para = phys.B_IGRF(year, month, day,
lat, lon,
ion_height,
az_p, za_p)
TEC_path = np.zeros((24,npix))
for t in range(0,24):
hour = rad.std_hour(t, verbose=False)
TEC_path[t], _ = itp.interp_space(tec_hp[t], rms_hp[t],
lat, lon,
za_p)
RM_maps = ion_RM(B_para, TEC_path)
for t in range(24):
RM_maps[t] = rotate_healpix_map(RM_maps[t], R_z0.T)
def get_radec_RM(self, ras, decs, verbose=False):
# TODO: allow ra,dec to be floats, rather than arrays of floats
# (to maintain single-pointing functionality)
if not all((i <= 2.0 * np.pi and i >= 0.0) for i in ras):
raise ValueError("All RAs must be between 0 and 2*pi radians")
if not all((i <= np.pi / 2.0 and i >= -np.pi / 2.0) for i in decs):
raise ValueError("All Decs must be between -pi/2 and pi/2 radians")
self.coordinates_flag = "J2000_RaDec"
for time in self.times:
time_str, _, _ = str(time).partition("T")
RM_dir = self.make_rm_dir(time_str)
year, month, day = map(int, time_str.split("-"))
if verbose:
print(year, month, day)
tec_hp, rms_hp, ion_height = self.ionex_data(year, month, day)
# predict the ionospheric RM for every hour within a day
for UT in self.UTs:
hour = utils.std_hour(UT)
c_icrs = SkyCoord(
ra=ras * u.radian,
dec=decs * u.radian,
location=self.location,
obstime=time + UT * u.hr,
frame="icrs",
)
c_altaz = c_icrs.transform_to("altaz")
alt_src = np.array(c_altaz.alt.degree)
az_src = np.array(c_altaz.az.degree)
zen_src = np.array(Angle(c_altaz.zen).degree) # AltAz.zen doesn't have method to return angle data
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(
self.lat_str, self.lon_str, az_src, zen_src, ion_height
)
# XXX B_para calculated per UT
B_para = phys.B_IGRF(year, month, day, coord_lat, coord_lon, ion_height, az_punct, zen_punct)
TEC_path, RMS_TEC_path = itp.get_los_tec(tec_hp[UT], rms_hp[UT], coord_lat, coord_lon, zen_punct)
new_file = os.path.join(RM_dir, "IonRM{hour}.txt".format(hour=hour))
utils.write_RM(hour, new_file, B_para, TEC_path, RMS_TEC_path, write_to_file=True)
b_para_s = []
rm_s = []
drm_s = []
for time in self.times:
time_str, _, _ = str(time).partition("T")
RM_add = []
dRM_add = []
RM_dir = os.path.join(self.rm_dir, "{date}".format(date=time_str))
for UT in self.UTs:
data_file = os.path.join(RM_dir, "IonRM{hour}.txt".format(hour=utils.std_hour(UT)))
_, _, B_para, RM_ut, dRM_ut = np.loadtxt(data_file, unpack=True)
b_para_s.append(B_para)
RM_add.append(RM_ut)
dRM_add.append(dRM_ut)
rm_s.append(RM_add)
drm_s.append(dRM_add)
self.B_para = np.array(b_para_s)
self.RMs = np.array(rm_s)
self.dRMs = np.array(drm_s)
def calc_radec_rm(self, ras, decs, verbose=False):
#TODO: allow ra,dec to be floats, rather than arrays of floats
# (to maintain single-pointing functionality)
if not all((i <= 2. * np.pi and i >= 0.) for i in ras):
raise ValueError('All RAs must be between 0 and 2*pi radians')
if not all((i <= np.pi / 2. and i >= -np.pi / 2.) for i in decs):
raise ValueError('All Decs must be between -pi/2 and pi/2 radians')
self.coordinates_flag = 'J2000_RaDec'
#final storage arrays
b_para_s = []
rm_s = []
drm_s = []
lsts_s = []
alt_src_s = []
for time in self.times: #for every day
#parsing, creating directory structure
time_str, _, _ = str(time).partition('T')
RM_dir = self.make_rm_dir(time_str)
year, month, day = map(int, time_str.split('-'))
if verbose: print(year, month, day)
#data aquisition
tec_hp, rms_hp, ion_height = self.ionex_data(year, month, day)
#temp storage arrays
alt_src_all = np.zeros([24, 3072])
lsts = np.zeros(24)
RM_add = []
dRM_add = []
# predict the ionospheric RM for every hour within a day
for ui, UT in enumerate(self.UTs):
hour = utils.std_hour(UT)
c_icrs = SkyCoord(ra=ras * u.radian,
dec=decs * u.radian,
location=self.location,
obstime=time + UT * u.hr,
frame='icrs')
# Added to calculate LST for the given time
c_local = AltAz(az=0. * u.deg,
alt=90. * u.deg,
obstime=time + UT * u.hr,
location=self.location)
c_local_Zeq = c_local.transform_to(ICRS)
lsts[ui] = c_local_Zeq.ra.degree
# Transform given RA/Dec into alt/az
c_altaz = c_icrs.transform_to('altaz')
alt_src = np.array(c_altaz.alt.degree)
az_src = np.array(c_altaz.az.degree)
alt_src_all[ui, :] = alt_src
# AltAz.zen doesn't have method to return angle data
zen_src = np.array(Angle(c_altaz.zen).degree)
# Calculating the ion piercing point (IPP) depends on alt/az coords
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(
self.lat_str, self.lon_str, az_src, zen_src, ion_height)
#XXX B_para calculated per UT
#these are the data we care about
B_para = phys.B_IGRF(year, month, day, coord_lat, coord_lon,
ion_height, az_punct, zen_punct)
TEC_path, RMS_TEC_path = itp.get_los_tec(
tec_hp[ui], rms_hp[ui], coord_lat, coord_lon, zen_punct)
IRM = 2.6e-17 * B_para * TEC_path
rms_IRM = 2.6e-17 * B_para * RMS_TEC_path
#TODO: replace append commands with numpy array indicies
b_para_s.append(B_para)
RM_add.append(IRM)
dRM_add.append(rms_IRM)
alt_src_s.append(alt_src_all)
lsts_s.append(lsts)
rm_s.append(RM_add)
drm_s.append(dRM_add)
self.B_para = np.array(b_para_s)
self.RMs = np.array(rm_s)
self.dRMs = np.array(drm_s)
self.alt_src = np.array(alt_src_s)
self.lst = np.array(lsts_s)
def calc_radec_rm(self, ras, decs, verbose=False):
#TODO: allow ra,dec to be floats, rather than arrays of floats
# (to maintain single-pointing functionality)
if not all((i<=2. * np.pi and i>=0.) for i in ras):
raise ValueError('All RAs must be between 0 and 2*pi radians')
if not all((i<=np.pi/2. and i>=-np.pi/2.) for i in decs):
raise ValueError('All Decs must be between -pi/2 and pi/2 radians')
self.coordinates_flag = 'J2000_RaDec'
# setup storage
self.B_paras = {}
self.RMs = {}
self.dRMs = {}
self.TEC = {}
self.dTEC = {}
self.lsts_s = {}
alt_src_s = {}
for uday in self.day_groups:
# time logic
group = self.day_groups[uday]
time_strs = [item.split(' ')[1] for item in group]
UTs_dec = []
for time_str in time_strs:
Hr, Min, Sec = [float(x) for x in time_str.split(':')]
dec_hour = Hr + Min / 60. + Sec / 3600.
UTs_dec.append(dec_hour)
year, month, day = [int(x) for x in uday.split('-')]
#data aquisition
tec_a, rms_a, ion_height, TEC = self.ionex_data(year, month, day)
tec_hp = itp.ionex2healpix(tec_a, UTs_dec, TEC['lat'], TEC['lon'])
rms_hp = itp.ionex2healpix(rms_a, UTs_dec, TEC['lat'], TEC['lon'])
lsts,RMs,dRMs = [],[],[]
# predict the ionospheric RM for every hour within a day
for ui,UT in enumerate(UTs_dec):
time = Time(uday + ' ' + time_strs[ui], format='iso', scale='utc') # XXX is this string reconstructed properly? not tested
c_icrs = SkyCoord(ra=ras * u.radian, dec=decs * u.radian,
location=self.location,
obstime=time,
frame='icrs')
# Added to calculate LST for the given time
c_local = AltAz(az=0.*u.deg, alt=90.*u.deg, obstime=time,
location=self.location)
c_local_Zeq = c_local.transform_to(ICRS)
lsts.append(c_local_Zeq.ra.degree)
# Transform given RA/Dec into alt/az
c_altaz = c_icrs.transform_to('altaz')
alt_src = np.array(c_altaz.alt.degree)
az_src = np.array(c_altaz.az.degree)
# AltAz.zen doesn't have method to return angle data
zen_src = np.array(Angle(c_altaz.zen).degree)
# Calculating the ion piercing point (IPP) depends on alt/az coords
coord_lat, coord_lon, az_punct, zen_punct = phys.ipp(self.lat_str, self.lon_str, az_src, zen_src, ion_height)
#XXX B_para calculated per UT
#these are the data we care about
B_para = phys.B_IGRF(year, month, day, coord_lat, coord_lon, ion_height, az_punct, zen_punct)
TEC_path, RMS_TEC_path = itp.get_los_tec(tec_hp[ui], rms_hp[ui], coord_lat, coord_lon, zen_punct)
RMs_ut = phys.RotationMeasure(TEC_path, B_para)
dRMs_ut = phys.RotationMeasure(RMS_TEC_path, B_para)
#TODO: replace append commands with numpy array indicies
RMs.append(RMs_ut)
dRMs.append(dRMs_ut)
self.RMs.update({key:RMs[ti] for ti, key in enumerate(group)})
self.dRMs.update({key:dRMs[ti] for ti, key in enumerate(group)})
self.B_paras[uday] = B_para
self.TEC.update({key:tec_hp[ti] for ti,key in enumerate(group)})
self.dTEC.update({key:rms_hp[ti] for ti,key in enumerate(group)})