def testAccessEntityPolymerFeatures(self):
"""Test case - access cached entity polymer info from full cache"""
try:
epe = EntityPolymerExtractor(
self.__cfgOb,
saveCachePath=self.__fullEntitySaveCachePath,
useCache=True,
saveCacheKwargs=self.__fullCacheKwargs)
eCount = epe.getEntryCount()
logger.info("Entry count %d", eCount)
self.assertGreaterEqual(eCount, self.__entryLimitFull)
#
unpL = epe.getRefSeqAccessions("UNP")
logger.info("Ref seq count %d", len(unpL))
self.assertGreaterEqual(len(unpL), 1)
#
testOp = False
if testOp:
for entryId in ["1CP9"]:
for entityId in ["1", "2"]:
uL = epe.getEntityRefSeqAccessions(
"UNP", entryId, entityId)
logger.debug("UNP for %s %s %r", entryId, entityId, uL)
#
except Exception as e:
logger.exception("Failing with %s", str(e))
self.fail()
def testAccessEntityPolymerFeatures(self):
"""Test case - access cached entity polymer info from test cache"""
try:
epe = EntityPolymerExtractor(self.__cfgOb,
exdbDirPath=self.__exdbCacheDirPath,
useCache=False,
cacheKwargs=self.__cacheKwargs)
eCount = epe.getEntryCount()
logger.info("Entry count %d", eCount)
self.assertGreaterEqual(eCount, self.__entryLimitTest)
#
unpL = epe.getRefSeqAccessions("UNP")
logger.info("Ref seq count %d", len(unpL))
self.assertGreaterEqual(len(unpL), 1)
#
for entryId in ["3RER"]:
for entityId in ["1"]:
uL = epe.getEntityRefSeqAccessions("UNP", entryId,
entityId)
logger.info("UNP for %s %s %r", entryId, entityId, uL)
#
except Exception as e:
logger.exception("Failing with %s", str(e))
self.fail()