def make_plot(frame, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure()
ax = fig.add_subplot(111, polar = True)
# Axis
rmax = 1.0 # to match ApJL paper
plot.xticks([], []) # Angles
plot.yticks([rmax], ["%.1f" % rmax]) # Max Radius
plot.ylim(0, rmax)
# Data
density = (fromfile("gasdens%d.dat" % frame).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
### Plot ###
result = ax.pcolormesh(theta, rad, normalized_density, cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.title("Gas Density Map at Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/innerDensityMap_%04d.png" % (save_directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Curves
ys = sm_axes
qs = np.array([a * (1 - e) for (a, e) in zip(ys, eccs)])
# Data
plot.plot(xs, ys, c = "blue", linewidth = linewidth, label = "a")
plot.plot(xs, qs, c = "purple", alpha = alpha, linewidth = linewidth, label = "q")
# Analytic
plot.plot(xs, ys_analytic, c = "black", linewidth = linewidth, label = "ideal")
# Annotate
this_title = readTitle()
plot.title("%s" % this_title, fontsize = fontsize + 2)
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Planet Distance ('a' or 'q')", fontsize = fontsize)
plot.legend(loc = "upper left")
# Limits
mins = [min(ys), min(qs), min(ys_analytic)]
maxes = [max(ys), max(qs), max(ys_analytic)]
plot.ylim(min(mins)- 0.002, max(maxes) + 0.015)
plot.xlim(0, xs[-1])
# Save and Close
plot.savefig("planetDistance.png", bbox_inches = 'tight')
plot.show()
plot.cla()
def make_plot():
# Figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Curves
plot.plot(frame_range, mass_over_time, linewidth = linewidth)
#plot.plot(frame_range, peak_over_time, linewidth = linewidth - 1, label = "Peak")
# Reference Lines
plot.plot([0, frame_range[-1]], 0.10 * max_mass * np.ones(2), linewidth = 2, color = "black")
#plot.plot([0, frame_range[-1]], 0.10 * max_peak * np.ones(2), linewidth = 1, color = "black")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Excess Mass", fontsize = fontsize)
plot.title(this_title, fontsize = fontsize)
#plot.legend(loc = "upper right")
# Limits
plot.xlim(0, frame_range[-1])
#plot.ylim(0.0, 1.0)
# Save + Close
plot.savefig("excessMass.png")
plot.show()
plot.close()
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
for i, mode in enumerate(default_modes):
alpha = 0.4
if mode == 1:
alpha = 1.0
if mode == 3 or mode == 5:
alpha = 0.7
plot.plot(frame_range, modes_over_time[i, :], linewidth = linewidth, alpha = alpha, label = "%d" % mode)
# Axis
plot.xlim(0, frame_range[-1])
plot.ylim(10**(-3.5), 10**(0.0))
plot.yscale("log")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Vortensity Mode Amplitudes", fontsize = fontsize)
plot.title("%s" % (this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right", bbox_to_anchor = (1.2, 1.0)) # outside of plot
# Save and Close
plot.savefig("fft_vortensity_modes.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, concentration_times, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
result = plot.pcolormesh(rad[1:], theta, np.transpose(np.log(concentration_times)), cmap = cmap)
cbar = fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Axis
plot.xlim(1.0, 2.5)
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize = fontsize + 2)
plot.ylabel("Dust Concentration Maps", fontsize = fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/dust_concentration_map_%04d.png" % (directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, radii, wave_locations, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Data
#kernel_size = 5
#smoothed_wave_locations = smooth(wave_locations, kernel_size)
# Curves
plot.plot(radii, wave_locations, linewidth = linewidth)
# Axis
plot.xlim(radii[0], radii[-1])
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize = fontsize)
plot.ylabel(r"$\phi$", fontsize = fontsize)
plot.title("Sprial Wave Location at Orbit %d\n%s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/sprialWave_%04d.png" % (save_directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin1D"]) - 0.05, float(fargo_par["Rmax1D"]) + 0.05)
plot.ylim(0, 5.0)
xlabel = "Radius"
# Data
averagedDensity = (np.loadtxt("gasdens.ascii_rad.%d.dat" % frame))[:, 1] / surface_density
### Plot ###
plot.plot(x, averagedDensity, linewidth = linewidth, label = "%d" % frame)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel("1-D Density", fontsize = fontsize)
plot.title("%s" % this_title, fontsize = fontsize + 1)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]) - 0.05, float(fargo_par["Rmax"]) + 0.05)
#plot.ylim(0, 5.0)
xlabel = "Radius"
# Data
vrad = (fromfile("gasvrad%d.dat" % i).reshape(num_rad, num_theta))
averaged_vrad = np.average(vrad, axis = 1)
### Plot ###
plot.plot(x, averaged_vrad, linewidth = linewidth, label = "%d" % frame)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel(r"Azimuthally Averaged $V_{rad}$", fontsize = fontsize)
plot.title("%s" % this_title, fontsize = fontsize + 1)
def make_radial_extent_plot():
# Figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Curves
plot.plot(frame_range, r_widths0, linewidth = linewidth, label = "0.05")
plot.plot(frame_range, r_widths1, linewidth = linewidth, label = "0.1")
plot.plot(frame_range, r_widths2, linewidth = linewidth, label = "0.2")
plot.plot(frame_range, r_widths5, linewidth = linewidth, label = "0.5")
plot.plot(frame_range, r_widths10, linewidth = linewidth, label = "1.0")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Radial Extents", fontsize = fontsize)
plot.title(this_title, fontsize = fontsize)
plot.legend(loc = "upper left")
# Limits
plot.xlim(0, frame_range[-1])
#plot.ylim(0.0, 1.0)
# Save + Close
plot.savefig("radial_extents.png")
plot.show()
plot.close()
def make_plot():
# Data
xs = np.array(times)
ys = np.array(vortex_masses)
# Curves
plot.plot(xs, ys, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel("Vortex Mass", fontsize=fontsize)
plot.title("Mass Tapering: %d, Title: %s" % (mass_taper, this_title),
fontsize=fontsize + 1)
# Limits
plot.xlim(xs[0], xs[-1])
plot.xscale("log")
plot.yscale("log")
# Save + Close
plot.savefig("vortexMass.png")
plot.show()
plot.close()
def make_plot():
# Figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
# Curves
plot.plot(frame_range, track99, linewidth=linewidth, label="99")
plot.plot(frame_range, track90, linewidth=linewidth, label="90")
plot.plot(frame_range, track75, linewidth=linewidth, label="75")
plot.plot(frame_range, track50, linewidth=linewidth, label="50")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel("Dust Density", fontsize=fontsize)
plot.title(this_title, fontsize=fontsize)
plot.legend(loc="upper left")
# Limits
plot.xlim(0, frame_range[-1])
#plot.ylim(0.0, 1.0)
# Save + Close
plot.savefig("quartiles.png")
plot.show()
plot.close()
def make_plot():
# Curves
ys = sm_axes
qs = np.array([a * (1 - e) for (a, e) in zip(ys, eccs)])
# Data
plot.plot(xs, ys, c="blue", linewidth=linewidth, label="a")
plot.plot(xs, qs, c="purple", alpha=alpha, linewidth=linewidth, label="q")
# Analytic
plot.plot(xs, ys_analytic, c="black", linewidth=linewidth, label="ideal")
# Annotate
this_title = readTitle()
plot.title("%s" % this_title, fontsize=fontsize + 2)
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel("Planet Distance ('a' or 'q')", fontsize=fontsize)
plot.legend(loc="upper left")
# Limits
mins = [min(ys), min(qs), min(ys_analytic)]
maxes = [max(ys), max(qs), max(ys_analytic)]
plot.ylim(min(mins) - 0.002, max(maxes) + 0.015)
plot.xlim(0, xs[-1])
# Save and Close
plot.savefig("planetDistance.png", bbox_inches='tight')
plot.show()
plot.cla()
def make_aspect_ratio_plot():
# Figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Collect Data
aspect_ratios0 = (np.pi / 180.0) * np.nan_to_num(np.array(rs) * np.array(az_widths0) / np.array(r_widths0))
aspect_ratios1 = (np.pi / 180.0) * np.nan_to_num(np.array(rs) * np.array(az_widths1) / np.array(r_widths1))
aspect_ratios2 = (np.pi / 180.0) * np.nan_to_num(np.array(rs) * np.array(az_widths2) / np.array(r_widths2))
aspect_ratios5 = (np.pi / 180.0) * np.nan_to_num(np.array(rs) * np.array(az_widths5) / np.array(r_widths5))
aspect_ratios10 = (np.pi / 180.0) * np.nan_to_num(np.array(rs) * np.array(az_widths10) / np.array(r_widths10))
# Curves
plot.plot(frame_range, aspect_ratios0, linewidth = linewidth, label = "0.05")
plot.plot(frame_range, aspect_ratios1, linewidth = linewidth, label = "0.1")
plot.plot(frame_range, aspect_ratios2, linewidth = linewidth, label = "0.2")
plot.plot(frame_range, aspect_ratios5, linewidth = linewidth, label = "0.5")
plot.plot(frame_range, aspect_ratios10, linewidth = linewidth, label = "1.0")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Aspect Ratios", fontsize = fontsize)
plot.title(this_title, fontsize = fontsize)
plot.legend(loc = "upper left")
# Limits
plot.xlim(0, frame_range[-1])
#plot.ylim(0.0, 1.0)
# Save + Close
plot.savefig("aspect_ratios.png")
plot.show()
plot.close()
def make_plot(frame, inner_pressure_gradients, outer_pressure_gradients, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
x = np.linspace(0, 360, num_theta)
plot.plot(x, inner_pressure_gradients, linewidth = linewidth, label = "Inner")
plot.plot(x, outer_pressure_gradients, linewidth = linewidth, label = "Outer")
# Axis
angles = np.linspace(0, 360, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xticks(angles)
plot.xlim(0, 360)
plot.ylim(0, 1.1 * np.max(inner_pressure_gradients))
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize = fontsize + 2)
plot.ylabel("Pressure Gradient", fontsize = fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right") # outside of plot)
# Save and Close
plot.savefig("%s/pressure_gradient_%04d.png" % (directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
for i, mode in enumerate(default_modes):
alpha = 0.4
if mode == 1:
alpha = 1.0
if mode == 3 or mode == 5:
alpha = 0.7
plot.plot(frame_range, modes_over_time[i, :], linewidth = linewidth, alpha = alpha, label = "%d" % mode)
plot.plot(frame_range, single_mode_strength, color = "black", linewidth = linewidth)
plot.plot(frame_range, np.ones(len(frame_range)), color = "black", linewidth = 1) # Reference Line at 1.0
# Axis
plot.xlim(0, frame_range[-1])
plot.ylim(10**(-3.5), 10**(1.0))
plot.yscale("log")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel(r"$\Sigma (v - v_K)$ Mode Amplitudes", fontsize = fontsize)
plot.title("%s" % (this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right", bbox_to_anchor = (1.2, 1.0)) # outside of plot
# Save and Close
plot.savefig("fft_combination_modes.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, azimuthal_radii, azimuthal_profiles, show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
for radius, azimuthal_profile in zip(azimuthal_radii, azimuthal_profiles):
plot.plot(theta, azimuthal_profile, linewidth=linewidth, alpha=alpha, label="%.3f" % radius)
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xlim(0, 2 * np.pi)
plot.xticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize=fontsize + 2)
plot.ylabel("Azimuthal Density", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right", bbox_to_anchor=(1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/azimuthal_density_%04d.png" % (directory, frame), bbox_inches="tight", dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(
float(fargo_par["Rmin"]) - 0.05,
float(fargo_par["Rmax"]) + 0.05)
#plot.ylim(0, 5.0)
xlabel = "Radius"
# Data
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
averaged_vtheta = np.average(vtheta, axis=1)
### Plot ###
plot.plot(x, averaged_vtheta, linewidth=linewidth, label="%d" % frame)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel(r"Azimuthally Averaged $V_{\phi}$", fontsize=fontsize)
plot.title("%s" % this_title, fontsize=fontsize + 1)
def make_plot(rla = True):
# Figure
fig = plot.figure(figsize = (8, 6))
# Curves
plot.plot(xs, outer_disk_torque, color = "blue", linewidth = linewidth, alpha = alpha)
plot.plot(xs[start : end], torque_deviations, color = "red", linewidth = linewidth)
plot.plot(xs[start : end], (torque_deviations / smooth_torque[start : end]) * median_torque, color = "green", linewidth = linewidth)
# Limits
plot.xlim(0, xs[-1])
plot.yscale('log')
plot.ylim(10**(-11), 10**(-5))
# Annotate
this_title = readTitle()
plot.title(this_title, fontsize = fontsize + 2)
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Torque", fontsize = fontsize)
# Save and Close
plot.savefig("torqueDeviation.png", bbox_inches = 'tight')
plot.show()
plot.close(fig)
### Second Plot with just sigma_torque / torque
plot.plot(xs[start : end], (torque_deviations / smooth_torque[start : end]), color = "green", linewidth = linewidth)
plot.savefig("relativeTorqueDeviation.png")
plot.show()
plot.close(fig)
def make_plot(frame, azimuthal_radii, azimuthal_profiles, avg_half, avg_full, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
xs = range(len(theta[:-1]))
for radius, azimuthal_profile in zip(azimuthal_radii, azimuthal_profiles):
plot.plot(xs, azimuthal_profile, linewidth = linewidth, alpha = alpha, label = "%.3f" % radius)
plot.plot(xs, avg_half, color = "black", linewidth = linewidth, alpha = 0.7, linestyle = "--")
plot.plot(xs, avg_full, color = "black", linewidth = linewidth + 2, linestyle = "--")
# Axis
plot.xlim(1, 6) # Only First Six m > 0 Modes
plot.ylim(10**(-3.5), 10**(0.0))
plot.yscale("log")
# Annotate
this_title = readTitle()
plot.xlabel("m", fontsize = fontsize)
plot.ylabel("Azimuthal Vortensity FFT", fontsize = fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right", bbox_to_anchor = (1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/fft_azimuthal_vortensity_%04d.png" % (directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame,
azimuthal_radii,
azimuthal_profiles,
avg_half,
avg_full,
show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
xs = range(len(theta[:-1]))
for radius, azimuthal_profile in zip(azimuthal_radii, azimuthal_profiles):
plot.plot(xs,
azimuthal_profile,
linewidth=linewidth,
alpha=alpha,
label="%.3f" % radius)
plot.plot(xs,
avg_half,
color="black",
linewidth=linewidth,
alpha=0.7,
linestyle="--")
plot.plot(xs,
avg_full,
color="black",
linewidth=linewidth + 2,
linestyle="--")
# Axis
plot.xlim(1, 6) # Only First Six m > 0 Modes
plot.ylim(10**(-3.5), 10**(0.0))
plot.yscale("log")
# Annotate
this_title = readTitle()
plot.xlabel("m", fontsize=fontsize)
plot.ylabel("Azimuthal Vortensity FFT", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right",
bbox_to_anchor=(1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/fft_azimuthal_vortensity_%04d.png" % (directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
ax = fig.add_subplot(111)
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]), float(fargo_par["Rmax"]))
xlabel = "Radius"
# Data
density = (np.loadtxt(sys.argv[2]).reshape(num_rad,
num_theta,
order="F"))
normalized_density = (density / density_unit) / surface_density_zero
### Plot ###
result = ax.pcolormesh(x,
theta,
np.transpose(normalized_density),
cmap=cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel(r"$\phi$", fontsize=fontsize)
plot.title("Interpolated Dust Density Map at Orbit %d\n%s" %
(orbit, this_title),
fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/%sinterpolatedDustDensityMap_%04d.png" %
(save_directory, prefix, i),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
# Axis
plot.ylim(0, 1.3)
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.3)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]), float(fargo_par["Rmax"]))
xlabel = "Radius"
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % i).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
vorticity = util.velocity_curl(vrad,
vtheta,
rad,
theta,
average=True,
frame=ref_frame)
vortensity = vorticity / normalized_density[1:, 1:]
averaged_w = np.average(vortensity, axis=1)
### Plot ###
plot.plot(x[1:], averaged_w, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel("Azimuthally Averaged Vortensity", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/%saveragedVortensity_%03d.png" %
(save_directory, prefix, i),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax1 = fig.add_subplot(111)
ax2 = ax1.twinx()
### Hatched Region for Quartiles ###
ax2.fill_between(frame_range, smoothed_lower_quartiles, smoothed_upper_quartiles, color = color[1], facecolor = "None", alpha = normal_alpha * offset / 1.3, hatch = "\\")
### Plot ###
ax2.plot(frame_range, vortex_avg_densities, color = color[1], linewidth = linewidth - 2, alpha = normal_alpha * offset)
ax2.plot(frame_range, smoothed_vortex_avg_densities, color = color[1], linewidth = linewidth - 1, alpha = smooth_alpha * offset)
ax1.plot(frame_range, vortex_azimuthal_widths, color = color[0], linewidth = linewidth - 2, alpha = normal_alpha)
ax1.plot(frame_range, smoothed_vortex_azimuthal_widths, color = color[0], linewidth = linewidth, alpha = smooth_alpha) # Dominant Line (that is why it is last)
# Limits
plot.xlim(frame_range[0], frame_range[-1])
#if np.max(smoothed_vortex_azimuthal_widths) > 180:
# angles = np.linspace(0, 360, 7)
# ax1.set_ylim(0, 360)
# ax1.set_yticks(angles)
#else:
# angles = np.linspace(0, 180, 7)
# ax1.set_ylim(0, 180)
# ax1.set_yticks(angles)
angles = np.linspace(0, 360, 7)
ax1.set_ylim(0, 360)
ax1.set_yticks(angles)
max_density = np.max(smoothed_upper_quartiles)
max_y = np.ceil(2.0 * max_density) / 2.0 # round up to the nearest 0.5
ax2.set_ylim(threshold, max_y)
# Annotate
this_title = readTitle()
ax1.set_xlabel("Number of Planet Orbits", fontsize = fontsize)
ax1.set_ylabel("Azimuthal Extent", fontsize = fontsize, color = color[0])
ax2.set_ylabel("Mean Density", fontsize = fontsize, color = color[1])
plot.title("Vortex Properties: %s" % (this_title), fontsize = fontsize + 1)
for tick1 in ax1.get_yticklabels():
tick1.set_color(color[0])
for tick2 in ax2.get_yticklabels():
tick2.set_color(color[1])
# Save and Close
plot.savefig("vortex_asymmetry77_v2.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Data ###
xs = range(mass_taper)
# Measure 1: Diff Mass Accretion
data = np.loadtxt(planet_fn)
masses = (data[:, 5]) # Planet Mass from 0 to Mass Taper
tapering_accretion = np.diff(masses[:mass_taper + 1])
# Measure 2: Viscosity
viscous_accretion = 3.0 * np.pi * surface_density * viscosity
# Measure 3: Radial Velocity
near_planet = 1.0
radius_near_planet = np.searchsorted(rad, near_planet)
rate = 10
xs_vrad = range(0, mass_taper, rate)
radial_velocity_at_planet = np.zeros(len(xs_vrad))
for i, frame in enumerate(xs_vrad):
vrad = (fromfile("gasvrad%d.dat" % frame).reshape(num_rad, num_theta))
radial_velocity_at_planet[i] = np.average(vrad[radius_near_planet, :])
radius = 1.0
radial_accretion = 2.0 * np.pi * radius * surface_density * radial_velocity_at_planet
# Curves
plot.plot(xs, tapering_accretion, color = "blue", label = "taper", linewidth = linewidth)
plot.plot([xs[0], xs[-1]], [viscous_accretion, viscous_accretion], color = "black", label = "viscous", linewidth = linewidth)
plot.plot(xs_vrad, radial_velocity_at_planet, color = "red", label = "v_rad (+)", linewidth = linewidth) # Positive
plot.plot(xs_vrad, -radial_velocity_at_planet, color = "orange", label = "v_rad (-)", linewidth = linewidth) # Negative
# Limits
plot.xlim(xs[0], xs[-1])
plot.yscale('log')
# Annotate
this_title = readTitle()
plot.xlabel("Number of Orbits", fontsize = fontsize)
plot.ylabel("Accretion Rate", fontsize = fontsize)
plot.title("Accretion for %s" % (this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right", bbox_to_anchor = (1.36, 1.0)) # outside of plot
# Save + Close
plot.savefig("accretion_diagnosis.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
ax1 = fig.add_subplot(111)
ax2 = ax1.twinx()
### Plot ###
ax2.plot(frame_range,
minimum_vortensities,
color=color[1],
linewidth=linewidth - 2,
alpha=normal_alpha * offset)
ax2.plot(frame_range,
smoothed_minimum_vortensities,
color=color[1],
linewidth=linewidth - 1,
alpha=smooth_alpha * offset)
ax1.plot(frame_range,
maximum_densities,
color=color[0],
linewidth=linewidth - 2,
alpha=normal_alpha)
ax1.plot(frame_range,
smoothed_maximum_densities,
color=color[0],
linewidth=linewidth,
alpha=smooth_alpha) # Dominant Line (that is why it is last)
# Limits
plot.xlim(frame_range[0], frame_range[-1])
ax1.set_ylim(0, 3.5) # Density Range
ax2.set_ylim(0, 0.3) # Vortensity Range
# Annotate
this_title = readTitle()
ax1.set_xlabel("Number of Planet Orbits", fontsize=fontsize)
ax1.set_ylabel("Maximum Density", fontsize=fontsize, color=color[0])
ax2.set_ylabel("Minimum Vortensity", fontsize=fontsize, color=color[1])
plot.title("Vortex Properties: %s" % (this_title), fontsize=fontsize + 1)
for tick1 in ax1.get_yticklabels():
tick1.set_color(color[0])
for tick2 in ax2.get_yticklabels():
tick2.set_color(color[1])
# Save and Close
plot.savefig("vortex_extrema.png", bbox_inches='tight', dpi=my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame,
azimuthal_radii,
azimuthal_profiles_a,
azimuthal_profiles_b,
show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
for i, (radius, azimuthal_profile_i, azimuthal_profile_j) in enumerate(
zip(azimuthal_radii, azimuthal_profiles_a, azimuthal_profiles_b)):
plot.plot(theta,
azimuthal_profile_i,
linewidth=linewidth,
alpha=alpha,
c=color[i],
linestyle="-",
label="%.3f" % radius)
plot.plot(theta,
azimuthal_profile_j,
linewidth=linewidth,
alpha=alpha,
c=color[i],
linestyle="-.")
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xlim(0, 2 * np.pi)
plot.xticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize=fontsize + 2)
plot.ylabel("Azimuthal Density", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right",
bbox_to_anchor=(1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/azimuthal_density_%04d.png" % (directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, radial_theta, radial_profiles, show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
x_min = 1.0
x_max = 2.5
x_min_i = np.searchsorted(rad, x_min)
x_max_i = np.searchsorted(rad, x_max)
max_density = 0
for this_theta, radial_profile in zip(radial_theta, radial_profiles):
print this_theta
plot.plot(rad,
radial_profile,
linewidth=linewidth,
alpha=alpha,
label="%.1f" % this_theta)
# Store max for ylim
this_max_density = np.max(radial_profile[x_min_i:x_max_i])
if this_max_density > max_density:
max_density = this_max_density
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xlim(x_min, x_max)
plot.ylim(0, max_density + 0.3)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize=fontsize + 2)
plot.ylabel("Density", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right",
bbox_to_anchor=(1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/radial_density_%04d.png" % (directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax1 = fig.add_subplot(111)
ax2 = ax1.twinx()
### Hatched Region for Quartiles ###
ax2.fill_between(frame_range, smoothed_lower_quartiles, smoothed_upper_quartiles, color = color[1], facecolor = "None", alpha = normal_alpha * offset / 1.3, hatch = "\\")
### Plot ###
ax2.plot(frame_range, vortex_avg_densities, color = color[1], linewidth = linewidth - 2, alpha = normal_alpha * offset)
ax2.plot(frame_range, smoothed_vortex_avg_densities, color = color[1], linewidth = linewidth - 1, alpha = smooth_alpha * offset)
ax1.plot(frame_range, vortex_azimuthal_widths, color = color[0], linewidth = linewidth - 2, alpha = normal_alpha)
ax1.plot(frame_range, smoothed_vortex_azimuthal_widths, color = color[0], linewidth = linewidth, alpha = smooth_alpha) # Dominant Line (that is why it is last)
# Limits
plot.xlim(frame_range[0], frame_range[-1])
#if np.max(smoothed_vortex_azimuthal_widths) > 180:
# angles = np.linspace(0, 360, 7)
# ax1.set_ylim(0, 360)
# ax1.set_yticks(angles)
#else:
# angles = np.linspace(0, 180, 7)
# ax1.set_ylim(0, 180)
# ax1.set_yticks(angles)
angles = np.linspace(0, 360, 7)
ax1.set_ylim(0, 360)
ax1.set_yticks(angles)
ax2.set_ylim(0.0, threshold)
# Annotate
this_title = readTitle()
ax1.set_xlabel("Number of Planet Orbits", fontsize = fontsize)
ax1.set_ylabel("Azimuthal Extent", fontsize = fontsize, color = color[0])
ax2.set_ylabel("Mean Vortensity", fontsize = fontsize, color = color[1])
plot.title("Vortex Properties: %s" % (this_title), fontsize = fontsize + 1)
for tick1 in ax1.get_yticklabels():
tick1.set_color(color[0])
for tick2 in ax2.get_yticklabels():
tick2.set_color(color[1])
# Save and Close
plot.savefig("vortex_vortensity_asymmetry.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
gs = gridspec.GridSpec(2, 1, height_ratios = [5, 11])
ax1 = fig.add_subplot(gs[0])
ax2 = fig.add_subplot(gs[1], sharex = ax1)
#fig.subplots_adjust(hspace = 1)
### Plot ###
for i, mode in enumerate(default_modes):
alpha = 0.4
if mode == 1:
alpha = 1.0
if mode == 3 or mode == 5:
alpha = 0.7
ax2.plot(frame_range, modes_over_time[i, :], linewidth = linewidth, alpha = alpha, label = "%d" % mode)
ax2.plot([0, frame_range[-1]], 0.1 * np.ones(2), color = "black", linewidth = 1) # Reference Line at 0.1
ax1.plot(frame_range, single_mode_strength, color = "black", linewidth = linewidth)
#ax1.plot(frame_range, vortex_highlighter, color = "orange", linewidth = linewidth)
ax1.plot([0, frame_range[-1]], np.ones(2), color = "black", linewidth = 1) # Reference Line at 1.0
ax1.plot(frame_range, single_mode_concentration, color = "red", linewidth = linewidth - 1)
ax1.plot([0, frame_range[-1]], 0.1 * np.ones(2), color = "black", linewidth = 1) # Reference Line at 0.1
# Limits
ax2.set_xlim(0, frame_range[-1])
ax2.set_ylim(10**(-3.5), 10**(0.0))
ax2.set_yscale("log")
ax1.set_ylim(10**(-1.5), 10**(1.0))
ax1.set_yscale("log")
# Annotate
this_title = readTitle()
ax2.set_xlabel("Number of Planet Orbits", fontsize = fontsize)
ax2.set_ylabel("Density Mode Amplitudes", fontsize = fontsize)
ax1.set_ylabel("m = 1 Strength", fontsize = fontsize)
ax1.set_title("%s" % (this_title), fontsize = fontsize + 1)
ax2.legend(loc = "upper right", bbox_to_anchor = (1.2, 1.0)) # outside of plot
# Save and Close
plot.savefig("fft_waveless_density_modes.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
gs = gridspec.GridSpec(2, 1, height_ratios = [5, 11])
ax1 = fig.add_subplot(gs[0])
ax2 = fig.add_subplot(gs[1], sharex = ax1)
#fig.subplots_adjust(hspace = 1)
### Plot ###
for i, mode in enumerate(default_modes):
alpha = 0.4
if mode == 1:
alpha = 1.0
if mode == 3 or mode == 5:
alpha = 0.7
ax2.plot(frame_range, modes_over_time[i, :], linewidth = linewidth, alpha = alpha, label = "%d" % mode)
ax2.plot([0, frame_range[-1]], 0.1 * np.ones(2), color = "black", linewidth = 1) # Reference Line at 0.1
ax1.plot(frame_range, single_mode_strength, color = "black", linewidth = linewidth)
#ax1.plot(frame_range, vortex_highlighter, color = "orange", linewidth = linewidth)
ax1.plot([0, frame_range[-1]], np.ones(2), color = "black", linewidth = 1) # Reference Line at 1.0
ax1.plot(frame_range, single_mode_concentration, color = "red", linewidth = linewidth - 1)
ax1.plot([0, frame_range[-1]], 0.1 * np.ones(2), color = "black", linewidth = 1) # Reference Line at 0.1
# Limits
ax2.set_xlim(0, frame_range[-1])
ax2.set_ylim(10**(-3.5), 10**(0.0))
ax2.set_yscale("log")
ax1.set_ylim(10**(-1.5), 10**(1.0))
ax1.set_yscale("log")
# Annotate
this_title = readTitle()
ax2.set_xlabel("Number of Planet Orbits", fontsize = fontsize)
ax2.set_ylabel("Density Mode Amplitudes", fontsize = fontsize)
ax1.set_ylabel("m = 1 Strength", fontsize = fontsize)
ax1.set_title("%s" % (this_title), fontsize = fontsize + 1)
ax2.legend(loc = "upper right", bbox_to_anchor = (1.2, 1.0)) # outside of plot
# Save and Close
plot.savefig("fft_density_modes.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax = fig.add_subplot(111)
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]), float(fargo_par["Rmax"]))
xlabel = "Radius"
# Data
blank_density = (fromfile("gasdens%d.dat" % blank_frame).reshape(num_rad, num_theta))
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = (density - blank_density) / surface_density_zero # Diff
### Plot ###
result = ax.pcolormesh(x, theta, np.transpose(normalized_density), cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel(r"$\phi$", fontsize = fontsize)
plot.title("Gas Difference Density Map at Orbit %d (- Orbit %d)\n%s" % (orbit, blank_frame, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%sdiff_densityMap_%04d-%04d.png" % (save_directory, prefix, blank_frame, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure()
ax = fig.add_subplot(111)
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
plot.xlim(float(fargo_par["Rmin"]), 1.0)
# Data
x = rad
density = (fromfile("gasdens%d.dat" % frame).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % frame).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % frame).reshape(num_rad, num_theta))
vorticity = curl(vrad, vtheta, rad, theta) / normalized_density[1:, 1:]
### Plot ###
result = ax.pcolormesh(x, theta, np.transpose(vorticity), cmap=cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize=fontsize)
plot.ylabel(r"$\phi$", fontsize=fontsize)
plot.title("Vortensity Map at Orbit %d: %s" % (orbit, this_title),
fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/vorticityMap_%03d.png" % (save_directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Axis
plot.ylim(0, 1.3)
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.3)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]), float(fargo_par["Rmax"]))
xlabel = "Radius"
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % i).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
vorticity = util.velocity_curl(vrad, vtheta, rad, theta, average = True, frame = ref_frame)
vortensity = vorticity / normalized_density[1:, 1:]
averaged_w = np.average(vortensity, axis = 1)
### Plot ###
plot.plot(x[1:], averaged_w, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel("Azimuthally Averaged Vortensity", fontsize = fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%saveragedVortensity_%03d.png" % (save_directory, prefix, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, radial_theta, radial_profiles, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
### Plot ###
x_min = 1.0
x_max = 2.5
x_min_i = np.searchsorted(rad, x_min)
x_max_i = np.searchsorted(rad, x_max)
max_pressure = 0
for this_theta, radial_profile in zip(radial_theta, radial_profiles):
print this_theta
plot.plot(rad, radial_profile, linewidth = linewidth, alpha = alpha, label = "%.1f" % this_theta)
# Store max for ylim
this_max_pressure = np.max(radial_profile[x_min_i : x_max_i])
if this_max_pressure > max_pressure:
max_pressure = this_max_pressure
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xlim(x_min, x_max)
plot.ylim(0, 1.1 * max_pressure)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize = fontsize + 2)
plot.ylabel("Pressure", fontsize = fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
plot.legend(loc = "upper right", bbox_to_anchor = (1.28, 1.0)) # outside of plot)
# Save and Close
plot.savefig("%s/radial_pressure_%04d.png" % (directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
#plot.xlim(0, x[-1])
plot.xlim(0.5, 2.0)
plot.ylim(0, 0.02)
xlabel = "Radius"
# Data
density = (fromfile("gasddens%d.dat" % i).reshape(num_rad, num_theta))
averagedDensity = np.average(density, axis=1) / surface_density
### Plot ###
plot.plot(x, averagedDensity, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel("Azimuthally-Averaged\n Normalized Density",
fontsize=fontsize)
#plot.title(r"$t = %d$ $\rm{orbits}$: %s" % (orbit, this_title), fontsize = fontsize + 1)
plot.title(r"$t = %d$ $\rm{orbits}$" % (orbit), fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/%savg_dust_density_%04d.png" %
(save_directory, prefix, i),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(rla=True):
# Figure
fig = plot.figure(figsize=(8, 6))
# Curves
plot.plot(xs,
outer_disk_torque,
color="blue",
linewidth=linewidth,
alpha=alpha)
plot.plot(xs[start:end],
torque_deviations,
color="red",
linewidth=linewidth)
plot.plot(xs[start:end],
(torque_deviations / smooth_torque[start:end]) * median_torque,
color="green",
linewidth=linewidth)
# Limits
plot.xlim(0, xs[-1])
plot.yscale('log')
plot.ylim(10**(-11), 10**(-5))
# Annotate
this_title = readTitle()
plot.title(this_title, fontsize=fontsize + 2)
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel("Torque", fontsize=fontsize)
# Save and Close
plot.savefig("torqueDeviation.png", bbox_inches='tight')
plot.show()
plot.close(fig)
### Second Plot with just sigma_torque / torque
plot.plot(xs[start:end], (torque_deviations / smooth_torque[start:end]),
color="green",
linewidth=linewidth)
plot.savefig("relativeTorqueDeviation.png")
plot.show()
plot.close(fig)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax = fig.add_subplot(111, polar = True)
# Axis
if axis == "zoom":
prefix = "zoom_"
rmax = 2.4 # to match ApJL paper
else:
prefix = ""
rmax = float(fargo_par["Rmax"])
plot.xticks([], []) # Angles
plot.yticks([rmax], ["%.1f" % rmax]) # Max Radius
plot.ylim(0, rmax)
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % i).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
vorticity = util.velocity_curl(vrad, vtheta, rad, theta) / normalized_density[1:, 1:]
### Plot ###
result = ax.pcolormesh(theta, rad, vorticity, cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.title("Vortensity Map at Orbit %d\n%s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%svortensityMap_%03d.png" % (save_directory, prefix, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure()
ax = fig.add_subplot(111)
# Axis
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
plot.xlim(float(fargo_par["Rmin"]), 1.0)
# Data
x = rad
density = (fromfile("gasdens%d.dat" % frame).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % frame).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % frame).reshape(num_rad, num_theta))
vorticity = curl(vrad, vtheta, rad, theta) / normalized_density[1:, 1:]
### Plot ###
result = ax.pcolormesh(x, theta, np.transpose(vorticity), cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize = fontsize)
plot.ylabel(r"$\phi$", fontsize = fontsize)
plot.title("Vortensity Map at Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/vorticityMap_%03d.png" % (save_directory, frame), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
for i, mode in enumerate(default_modes):
alpha = 0.4
if mode == 1:
alpha = 1.0
if mode == 3 or mode == 5:
alpha = 0.7
plot.plot(frame_range,
modes_over_time[i, :],
linewidth=linewidth,
alpha=alpha,
label="%d" % mode)
plot.plot(frame_range,
single_mode_strength,
color="black",
linewidth=linewidth)
plot.plot(frame_range,
np.ones(len(frame_range)),
color="black",
linewidth=1) # Reference Line at 1.0
# Axis
plot.xlim(0, frame_range[-1])
plot.ylim(10**(-3.5), 10**(1.0))
plot.yscale("log")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel(r"$\Sigma (v - v_K)$ Mode Amplitudes", fontsize=fontsize)
plot.title("%s" % (this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right",
bbox_to_anchor=(1.2, 1.0)) # outside of plot
# Save and Close
plot.savefig("fft_combination_modes.png", bbox_inches='tight', dpi=my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Curves
ys = masses / float(fargo_par["PlanetMass"])
plot.plot(xs, ys, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.title("%s" % this_title, fontsize = fontsize + 2)
plot.xlabel("Timestep", fontsize = fontsize)
plot.ylabel("Planet Mass / Initial Mass", fontsize = fontsize)
# Limits
#plot.ylim(1, 1.05)
# Save and Close
plot.savefig("planetMass.png", bbox_inches = 'tight')
plot.show()
plot.cla()
def make_plot():
# Curves
ys = masses / float(fargo_par["PlanetMass"])
plot.plot(xs, ys, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.title("%s" % this_title, fontsize = fontsize + 2)
plot.xlabel("Orbit", fontsize = fontsize)
plot.ylabel("Planet Mass / Initial Mass", fontsize = fontsize)
# Limits
#plot.ylim(1, 1.05)
# Save and Close
plot.savefig("planetMass.png", bbox_inches = 'tight')
plot.show()
plot.cla()
def make_map_plot(frame):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Data
inner_disk_index = np.searchsorted(rad, inner_disk_rad)
outer_disk_index = np.searchsorted(rad, outer_disk_rad)
xs = rad[inner_disk_index:outer_disk_index]
vortex_map = map_one_vortex(frame) / surface_density_zero
# Set up figure
fig = plot.figure()
ax = fig.add_subplot(111)
# Curves
result = ax.pcolormesh(xs, theta, np.transpose(vortex_map), cmap=cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Limits
plot.xlim(inner_disk_rad, outer_disk_rad)
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize=fontsize)
plot.ylabel(r"$\phi$", fontsize=fontsize)
plot.title("Vortex Map at Orbit %d: %s" % (orbit, this_title),
fontsize=fontsize + 1)
# Save + Close
plot.savefig("%s/vortexMass_%04d.png" % (save_directory, frame))
plot.show()
plot.close(fig)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
xlabel = "Radius"
# Data
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
averaged_vtheta = np.average(vtheta, axis=1)
### Plot ###
plot.plot(x, averaged_vtheta, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel(r"Azimuthally Averaged $V_{\phi}$", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/%savg_theta_velocity_%04d.png" %
(save_directory, prefix, i),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_map_plot(frame):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Data
inner_disk_index = np.searchsorted(rad, inner_disk_rad)
outer_disk_index = np.searchsorted(rad, outer_disk_rad)
xs = rad[inner_disk_index : outer_disk_index]
vortex_map = map_one_vortex(frame) / surface_density_zero
# Set up figure
fig = plot.figure()
ax = fig.add_subplot(111)
# Curves
result = ax.pcolormesh(xs, theta, np.transpose(vortex_map), cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Limits
plot.xlim(inner_disk_rad, outer_disk_rad)
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize = fontsize)
plot.ylabel(r"$\phi$", fontsize = fontsize)
plot.title("Vortex Map at Orbit %d: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save + Close
plot.savefig("%s/vortexMass_%04d.png" % (save_directory, frame))
plot.show()
plot.close(fig)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(0, x[-1])
xlabel = "Radius"
# Data
stoppingTimes = (fromfile("gasTStop%d.dat" % i).reshape(num_rad, num_theta))
avgStoppingTimes = np.average(stoppingTimes, axis = 1)
medianStoppingTimes = np.median(stoppingTimes, axis = 1)
### Plot ###
plot.plot(x, avgStoppingTimes, linewidth = linewidth)
plot.plot(x, medianStoppingTimes, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel("Mean and Median\n Stopping Times", fontsize = fontsize)
plot.title("%s:\n" % (this_title) + "t = %d orbits" % (orbit), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%savg_stopping_times_%04d.png" % (save_directory, prefix, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax = fig.add_subplot(111, polar = True)
# Axis
if axis == "zoom":
prefix = "zoom_"
rmax = 2.4 # to match ApJL paper
else:
prefix = ""
rmax = float(fargo_par["Rmax"])
plot.xticks([], []) # Angles
plot.yticks([rmax], ["%.1f" % rmax]) # Max Radius
plot.ylim(0, rmax)
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
### Plot ###
result = ax.pcolormesh(theta, rad, normalized_density, cmap = cmap)
fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Annotate
this_title = readTitle()
plot.title("Gas Density Map at Orbit %d\n%s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%sdensityMap_%03d.png" % (save_directory, prefix, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Data
xs = np.array(times)
ys = np.array(strengths)
# Curves
plot.plot(xs, ys, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize=fontsize)
plot.ylabel("Peak Strength", fontsize=fontsize)
plot.title(this_title, fontsize=fontsize)
# Limits
plot.xlim(xs[0], xs[-1])
# Save + Close
plot.savefig("peakStrength.png")
plot.show()
plot.close()
def make_plot(frame,
inner_pressure_gradients,
outer_pressure_gradients,
show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
x = np.linspace(0, 360, num_theta)
plot.plot(x, inner_pressure_gradients, linewidth=linewidth, label="Inner")
plot.plot(x, outer_pressure_gradients, linewidth=linewidth, label="Outer")
# Axis
angles = np.linspace(0, 360, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.xticks(angles)
plot.xlim(0, 360)
plot.ylim(0, 1.1 * np.max(inner_pressure_gradients))
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize=fontsize + 2)
plot.ylabel("Pressure Gradient", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
plot.legend(loc="upper right") # outside of plot)
# Save and Close
plot.savefig("%s/pressure_gradient_%04d.png" % (directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Data
xs = np.array(times)
ys = np.array(strengths)
# Curves
plot.plot(xs, ys, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Peak Strength", fontsize = fontsize)
plot.title(this_title, fontsize = fontsize)
# Limits
plot.xlim(xs[0], xs[-1])
# Save + Close
plot.savefig("peakStrength.png")
plot.show()
plot.close()
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(0, x[-1])
xlabel = "Radius"
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
averagedDensity = np.average(density, axis = 1) / surface_density
### Plot ###
plot.plot(x, averagedDensity, linewidth = linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel("Azimuthally-Averaged\n Normalized Density", fontsize = fontsize)
plot.title(r"$t = %d$ $\rm{orbits}: %s" % (orbit, this_title), fontsize = fontsize + 1)
# Save and Close
plot.savefig("%s/%savg_density_%04d.png" % (save_directory, prefix, i), bbox_inches = 'tight', dpi = my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot(frame, concentration_times, show=False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
### Plot ###
result = plot.pcolormesh(rad[1:],
theta,
np.transpose(np.log(concentration_times)),
cmap=cmap)
cbar = fig.colorbar(result)
result.set_clim(clim[0], clim[1])
# Axis
plot.xlim(1.0, 2.5)
angles = np.linspace(0, 2 * np.pi, 7)
degree_angles = ["%d" % d_a for d_a in np.linspace(0, 360, 7)]
plot.ylim(0, 2 * np.pi)
plot.yticks(angles, degree_angles)
# Annotate
this_title = readTitle()
plot.xlabel(r"$\phi$", fontsize=fontsize + 2)
plot.ylabel("Dust Concentration Maps", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/dust_concentration_map_%04d.png" % (directory, frame),
bbox_inches='tight',
dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def add_to_plot(frame, choice = "normal", show = False):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * frame
# Axis
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin1D"]) - 0.05, 1.0)
plot.ylim(0, 5.0)
# Data
averagedDensity = (np.loadtxt("gasdens.ascii_rad.%d.dat" % frame))[:, 1] / surface_density
### Plot ###
plot.plot(x, averagedDensity, linewidth = linewidth, label = "%d" % frame)
# Annotate
this_title = readTitle()
plot.xlabel("Radius", fontsize = fontsize)
plot.ylabel("1-D Density", fontsize = fontsize)
plot.title("%s" % this_title, fontsize = fontsize + 1)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
#plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
plot.xlim(float(fargo_par["Rmin"]) - 0.05, float(fargo_par["Rmax"]) + 0.05)
#plot.ylim(0, 5.0)
xlabel = "Radius"
# Data
density = (fromfile("gasdens%d.dat" % i).reshape(num_rad, num_theta))
normalized_density = density / surface_density_zero
vrad = (fromfile("gasvrad%d.dat" % i).reshape(num_rad, num_theta))
vtheta = (fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta))
vorticity = util.velocity_curl(vrad, vtheta, rad, theta, average = True, frame = ref_frame)
vortensity = vorticity / normalized_density[1:, 1:]
averaged_w = np.average(vortensity, axis = 1)
### Plot ###
plot.plot(x, averaged_w, linewidth = linewidth, label = "%d" % frame)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize = fontsize)
plot.ylabel(r"Azimuthally Averaged Vortensity", fontsize = fontsize)
plot.title("%s" % this_title, fontsize = fontsize + 1)
def choose_axis(i, axis):
# Orbit Number
time = float(fargo_par["Ninterm"]) * float(fargo_par["DT"])
orbit = int(round(time / (2 * np.pi), 0)) * i
# Set up figure
fig = plot.figure(figsize=(700 / my_dpi, 600 / my_dpi), dpi=my_dpi)
# Axis
if axis == "zoom":
x = (rad - 1) / scale_height
prefix = "zoom_"
plot.xlim(0, 40) # to match the ApJL paper
# plot.ylim(0, 1.2)
xlabel = r"($r - r_p$) $/$ $h$"
else:
x = rad
prefix = ""
xlabel = "Radius"
# Data
vtheta = fromfile("gasvtheta%d.dat" % i).reshape(num_rad, num_theta)
averaged_vtheta = np.average(vtheta, axis=1)
### Plot ###
plot.plot(x, averaged_vtheta, linewidth=linewidth)
# Annotate
this_title = readTitle()
plot.xlabel(xlabel, fontsize=fontsize)
plot.ylabel(r"Azimuthally Averaged $V_{\phi}$", fontsize=fontsize)
plot.title("Orbit %d: %s" % (orbit, this_title), fontsize=fontsize + 1)
# Save and Close
plot.savefig("%s/%savg_theta_velocity_%04d.png" % (save_directory, prefix, i), bbox_inches="tight", dpi=my_dpi)
if show:
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
def make_plot():
# Data
xs = np.array(times)
# Curves
plot.plot(xs, peaks, c = "blue", linewidth = linewidth, label = r"$\rho_{peak}$")
#plot.plot(xs, sigmas, c = "red", linewidth = linewidth - 1, alpha = alpha, label = r"$\sigma$")
#plot.plot(xs, zone_sigmas, c = "green", linewidth = linewidth - 1, alpha = alpha, label = r"$\sigma_{zone}$")
# Annotate
this_title = readTitle()
plot.xlabel("Number of Planet Orbits", fontsize = fontsize)
plot.ylabel("Peak Density", fontsize = fontsize)
plot.title(this_title, fontsize = fontsize)
# Limits
plot.xlim(xs[0], xs[-1])
# Save + Close
plot.savefig("peakDensityOverTime.png")
plot.show()
plot.close()
def make_plot():
# Set up figure
fig = plot.figure(figsize = (700 / my_dpi, 600 / my_dpi), dpi = my_dpi)
ax1 = fig.add_subplot(111)
ax2 = ax1.twinx()
### Plot ###
ax2.plot(frame_range, minimum_vortensities, color = color[1], linewidth = linewidth - 2, alpha = normal_alpha * offset)
ax2.plot(frame_range, smoothed_minimum_vortensities, color = color[1], linewidth = linewidth - 1, alpha = smooth_alpha * offset)
ax1.plot(frame_range, maximum_densities, color = color[0], linewidth = linewidth - 2, alpha = normal_alpha)
ax1.plot(frame_range, smoothed_maximum_densities, color = color[0], linewidth = linewidth, alpha = smooth_alpha) # Dominant Line (that is why it is last)
# Limits
plot.xlim(frame_range[0], frame_range[-1])
ax1.set_ylim(0, 3.5) # Density Range
ax2.set_ylim(0, 0.3) # Vortensity Range
# Annotate
this_title = readTitle()
ax1.set_xlabel("Number of Planet Orbits", fontsize = fontsize)
ax1.set_ylabel("Maximum Density", fontsize = fontsize, color = color[0])
ax2.set_ylabel("Minimum Vortensity", fontsize = fontsize, color = color[1])
plot.title("Vortex Properties: %s" % (this_title), fontsize = fontsize + 1)
for tick1 in ax1.get_yticklabels():
tick1.set_color(color[0])
for tick2 in ax2.get_yticklabels():
tick2.set_color(color[1])
# Save and Close
plot.savefig("vortex_extrema.png", bbox_inches = 'tight', dpi = my_dpi)
plot.show()
plot.close(fig) # Close Figure (to avoid too many figures)
