class FrameC18n(object):
def __init__(self, path, bin_min_exp=-4, bin_max_exp=2, num_bins=None):
if not num_bins:
num_bins = 1 + bin_max_exp - bin_min_exp
self._path = path
self._img_size = self._path.stat().st_size
self._image_input = ImageInput.open(str(self._path))
if self._image_input is None:
# TODO check that the problem *is* actually the file is not there
raise FileNotFoundError(
f"could not read image `{self._path}': {oiio.geterror()}")
roi = self._image_input.spec().roi
# n.b. ROI xend and yend are range-style 'one beyond the end' values
self._x = roi.xbegin
self._width = roi.xend - roi.xbegin
self._y = roi.ybegin
self._height = roi.yend - roi.ybegin
self._overall_registers = Registers(
f"registers for entire image", "overall",
self._image_input.spec().channelnames)
self.octants = {}
for octant_key in Octant.keys():
self.octants[octant_key] = Octant(self._image_input.spec(),
octant_key, bin_min_exp,
bin_max_exp, num_bins)
def tally(self):
img_array = self._image_input.read_image()
self._overall_registers.tally(img_array,
np.full(img_array.shape[0:2], True))
for octant in self.octants.values():
octant.tally(img_array)
def add_to_columns(self, columns):
"""Append the information in the frame c18n to a Pandas DataFrame
Parameters
----------
columns : dict
"""
self._overall_registers.add_to_columns(columns)
for octant in self.octants:
self.octants[octant].add_to_columns(columns)
def summarize(self, indent_level=0):
summary = ''
summary += "overall image statistics:\n"
summary += self._overall_registers.summarize(indent_level + 1)
for octant in self.octants.values():
if samples_in_octant := octant.samples_in_octant:
summary += f"{' '*indent_level}statistics for {octant} ({samples_in_octant} samples):\n"
summary += octant.summarize(indent_level + 1)
return summary
class Octant(object):
"""
Class to hold spatial and statistical distribution of pixel values in a Cartesian octant.
Parameters
----------
img_spec : OpenImageIO ImageSpec
Describes the image to be analyzed
octant_key : tuple of booleans
Indicates whether an octant axis represents, in the space of pixel values, distance
along the negative extent of that axis. (All octant data is stored with spatial
and statistical data transformed to all-positive values; for the spatial data, the
_to_first_octant_scalars attribute provides for transformatipon back to the original
coordinate system.
bin_min_exp : int
Base-10 exponent of the largest negative value considered to not be 'overflow'. See
documentation of the LogBins class for the gory details.
bin_max_exp : int
Base-10 exponent of the tinyest negative value considered to not be 'underflow'. See
documentaionm of the LogBinds class for the gory details.
num_bins : int
Number of bins into which pixel values will be mapped
"""
@staticmethod
def keys():
keys = []
for has_blue_neg in (False, True):
for has_green_neg in (False, True):
for has_red_neg in (False, True):
keys.append((has_red_neg, has_green_neg, has_blue_neg))
return keys
def _name(self, channel_names, spacer):
name_pieces = []
negativities_and_names = zip(self._octant_key, channel_names)
for negativity, name in negativities_and_names:
name_pieces += [f"{name}{'-' if negativity else '+'}"]
return spacer.join(name_pieces)
def name(self):
return self._name(['red', 'green', 'blue'], ', ')
def label(self):
return f"oct_{self._name(['r', 'g', 'b'], '')}"
def _ix_for_octant(self, img_array):
ix = np.full(img_array.shape[:2], True, dtype=np.bool)
for chan, axis_negative_in_octant in enumerate(self._octant_key):
chan_in_octant_ix = img_array[
...,
chan] < 0 if axis_negative_in_octant else img_array[...,
chan] >= 0
np.logical_and(ix, chan_in_octant_ix, ix)
return ix
@staticmethod
def _log10_edges(min_exp, max_exp, num_bins=None):
if not num_bins:
num_bins = 1 + max_exp - min_exp
zero_anchor = np.array([0])
edge = 10**(np.linspace(min_exp,
max_exp,
num_bins,
dtype=np.dtype('half')))
max_anchor = np.array([np.finfo('half').max])
edge = np.hstack([zero_anchor, edge, max_anchor])
return edge
def __init__(self, img_spec, octant_key, bin_min_exp, bin_max_exp,
num_bins):
self._img_spec = img_spec
self._octant_key = octant_key
self._to_first_octant_scalars = [-1 if e else 1 for e in octant_key]
self._edge = self._log10_edges(bin_min_exp,
bin_max_exp,
num_bins=num_bins)
self.samples_in_octant = 0
self.hist3d = np.zeros((num_bins, num_bins, num_bins), dtype=np.uint)
self._label = self.label()
register_desc = f"registers for octant {self._label}"
self._registers = Registers(register_desc, self._label,
self._img_spec.channelnames)
def _bin(self, img_array, octant_ix):
bins = [self._edge] * 3
img_in_octant = img_array[octant_ix]
img_in_octant *= self._to_first_octant_scalars
self.hist3d, _ = np.histogramdd(img_in_octant, bins)
def tally(self, img_array):
octant_ix = self._ix_for_octant(img_array)
self.samples_in_octant = np.sum(octant_ix)
self._bin(img_array, octant_ix)
self._registers.tally(img_array, octant_ix)
def add_to_columns(self, columns):
self._registers.add_to_columns(columns)
def summarize(self, indent_level=0):
return self._registers.summarize(indent_level)