Ejemplo n.º 1
0
    def upload_file(self, local_path, input_path):
        remote_path = join_root(self.root, input_path)

        # Copy
        orig_stat = remote_path.stat()
        with make_dir_writable(remote_path.parent):
            local_path.copyfile(remote_path)
            remote_path.chmod(orig_stat.st_mode & 0o7777)
            if self.restore_owner:
                remote_path.chown(orig_stat.st_uid, orig_stat.st_gid)
Ejemplo n.º 2
0
    def upload_file(self, local_path, input_path):
        remote_path = join_root(self.root, input_path)

        # Copy
        orig_stat = remote_path.stat()
        with make_dir_writable(remote_path.parent):
            local_path.copyfile(remote_path)
            remote_path.chmod(orig_stat.st_mode & 0o7777)
            if self.restore_owner:
                remote_path.chown(orig_stat.st_uid, orig_stat.st_gid)
Ejemplo n.º 3
0
def chroot_create(args):
    """Unpacks the experiment in a folder so it can be run with chroot.

    All the files in the pack are unpacked; system files are copied only if
    they were not packed, and busybox is installed if /bin/sh wasn't packed.

    In addition, input files are put in a tar.gz (so they can be put back after
    an upload) and the configuration file is extracted.
    """
    if not args.pack:
        logger.critical("setup/create needs the pack filename")
        sys.exit(1)

    pack = Path(args.pack[0])
    target = Path(args.target[0])
    if target.exists():
        logger.critical("Target directory exists")
        sys.exit(1)

    if not issubclass(DefaultAbstractPath, PosixPath):
        logger.critical("Not unpacking on POSIX system")
        sys.exit(1)

    signals.pre_setup(target=target, pack=pack)

    # We can only restore owner/group of files if running as root
    restore_owner = should_restore_owner(args.restore_owner)

    # Unpacks configuration file
    rpz_pack = RPZPack(pack)
    rpz_pack.extract_config(target / 'config.yml')

    # Loads config
    config = load_config_file(target / 'config.yml', True)
    packages = config.packages

    target.mkdir()
    root = (target / 'root').absolute()

    root.mkdir()
    try:
        # Checks that everything was packed
        packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
        if packages_not_packed:
            record_usage(chroot_missing_pkgs=True)
            logger.warning("According to configuration, some files were left "
                           "out because they belong to the following "
                           "packages:%s\nWill copy files from HOST SYSTEM",
                           ''.join('\n    %s' % pkg
                                   for pkg in packages_not_packed))
            missing_files = False
            for pkg in packages_not_packed:
                for f in pkg.files:
                    path = Path(f.path)
                    if not path.exists():
                        logger.error(
                            "Missing file %s (from package %s) on host, "
                            "experiment will probably miss it",
                            path, pkg.name)
                        missing_files = True
                        continue
                    dest = join_root(root, path)
                    dest.parent.mkdir(parents=True)
                    if path.is_link():
                        dest.symlink(path.read_link())
                    else:
                        path.copy(dest)
                    if restore_owner:
                        stat = path.stat()
                        dest.chown(stat.st_uid, stat.st_gid)
            if missing_files:
                record_usage(chroot_mising_files=True)

        # Unpacks files
        members = rpz_pack.list_data()
        for m in members:
            # Remove 'DATA/' prefix
            m.name = str(rpz_pack.remove_data_prefix(m.name))
        if not restore_owner:
            uid = os.getuid()
            gid = os.getgid()
            for m in members:
                m.uid = uid
                m.gid = gid
        logger.info("Extracting files...")
        rpz_pack.extract_data(root, members)
        rpz_pack.close()

        resolvconf_src = Path('/etc/resolv.conf')
        if resolvconf_src.exists():
            try:
                resolvconf_src.copy(root / 'etc/resolv.conf')
            except IOError:
                pass

        # Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
        sh_path = join_root(root, Path('/bin/sh'))
        env_path = join_root(root, Path('/usr/bin/env'))
        if not sh_path.lexists() or not env_path.lexists():
            logger.info("Setting up busybox...")
            busybox_path = join_root(root, Path('/bin/busybox'))
            busybox_path.parent.mkdir(parents=True)
            with make_dir_writable(join_root(root, Path('/bin'))):
                download_file(busybox_url(config.runs[0]['architecture']),
                              busybox_path,
                              'busybox-%s' % config.runs[0]['architecture'])
                busybox_path.chmod(0o755)
                if not sh_path.lexists():
                    sh_path.parent.mkdir(parents=True)
                    sh_path.symlink('/bin/busybox')
                if not env_path.lexists():
                    env_path.parent.mkdir(parents=True)
                    env_path.symlink('/bin/busybox')

        # Original input files, so upload can restore them
        input_files = [f.path for f in config.inputs_outputs.values()
                       if f.read_runs]
        if input_files:
            logger.info("Packing up original input files...")
            inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
            for ifile in input_files:
                filename = join_root(root, ifile)
                if filename.exists():
                    inputtar.add(str(filename), str(ifile))
            inputtar.close()

        # Meta-data for reprounzip
        metadata_write(target, metadata_initial_iofiles(config), 'chroot')

        signals.post_setup(target=target, pack=pack)
    except Exception:
        rmtree_fixed(root)
        raise
Ejemplo n.º 4
0
def chroot_create(args):
    """Unpacks the experiment in a folder so it can be run with chroot.

    All the files in the pack are unpacked; system files are copied only if
    they were not packed, and busybox is installed if /bin/sh wasn't packed.

    In addition, input files are put in a tar.gz (so they can be put back after
    an upload) and the configuration file is extracted.
    """
    if not args.pack:
        logging.critical("setup/create needs the pack filename")
        sys.exit(1)

    pack = Path(args.pack[0])
    target = Path(args.target[0])
    if target.exists():
        logging.critical("Target directory exists")
        sys.exit(1)

    if DefaultAbstractPath is not PosixPath:
        logging.critical("Not unpacking on POSIX system")
        sys.exit(1)

    signals.pre_setup(target=target, pack=pack)

    # We can only restore owner/group of files if running as root
    restore_owner = should_restore_owner(args.restore_owner)

    # Unpacks configuration file
    rpz_pack = RPZPack(pack)
    rpz_pack.extract_config(target / 'config.yml')

    # Loads config
    config = load_config_file(target / 'config.yml', True)
    packages = config.packages

    target.mkdir()
    root = (target / 'root').absolute()

    root.mkdir()
    try:
        # Checks that everything was packed
        packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
        if packages_not_packed:
            record_usage(chroot_missing_pkgs=True)
            logging.warning("According to configuration, some files were left "
                            "out because they belong to the following "
                            "packages:%s\nWill copy files from HOST SYSTEM",
                            ''.join('\n    %s' % pkg
                                    for pkg in packages_not_packed))
            missing_files = False
            for pkg in packages_not_packed:
                for f in pkg.files:
                    path = Path(f.path)
                    if not path.exists():
                        logging.error(
                            "Missing file %s (from package %s) on host, "
                            "experiment will probably miss it",
                            path, pkg.name)
                        missing_files = True
                        continue
                    dest = join_root(root, path)
                    dest.parent.mkdir(parents=True)
                    if path.is_link():
                        dest.symlink(path.read_link())
                    else:
                        path.copy(dest)
                    if restore_owner:
                        stat = path.stat()
                        dest.chown(stat.st_uid, stat.st_gid)
            if missing_files:
                record_usage(chroot_mising_files=True)

        # Unpacks files
        members = rpz_pack.list_data()
        for m in members:
            # Remove 'DATA/' prefix
            m.name = str(rpz_pack.remove_data_prefix(m.name))
        if not restore_owner:
            uid = os.getuid()
            gid = os.getgid()
            for m in members:
                m.uid = uid
                m.gid = gid
        logging.info("Extracting files...")
        rpz_pack.extract_data(root, members)
        rpz_pack.close()

        # Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
        sh_path = join_root(root, Path('/bin/sh'))
        env_path = join_root(root, Path('/usr/bin/env'))
        if not sh_path.lexists() or not env_path.lexists():
            logging.info("Setting up busybox...")
            busybox_path = join_root(root, Path('/bin/busybox'))
            busybox_path.parent.mkdir(parents=True)
            with make_dir_writable(join_root(root, Path('/bin'))):
                download_file(busybox_url(config.runs[0]['architecture']),
                              busybox_path,
                              'busybox-%s' % config.runs[0]['architecture'])
                busybox_path.chmod(0o755)
                if not sh_path.lexists():
                    sh_path.parent.mkdir(parents=True)
                    sh_path.symlink('/bin/busybox')
                if not env_path.lexists():
                    env_path.parent.mkdir(parents=True)
                    env_path.symlink('/bin/busybox')

        # Original input files, so upload can restore them
        input_files = [f.path for f in itervalues(config.inputs_outputs)
                       if f.read_runs]
        if input_files:
            logging.info("Packing up original input files...")
            inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
            for ifile in input_files:
                filename = join_root(root, ifile)
                if filename.exists():
                    inputtar.add(str(filename), str(ifile))
            inputtar.close()

        # Meta-data for reprounzip
        metadata_write(target, metadata_initial_iofiles(config), 'chroot')

        signals.post_setup(target=target, pack=pack)
    except Exception:
        rmtree_fixed(root)
        raise
Ejemplo n.º 5
0
def chroot_create(args):
    """Unpacks the experiment in a folder so it can be run with chroot.

    All the files in the pack are unpacked; system files are copied only if
    they were not packed, and busybox is installed if /bin/sh wasn't packed.

    In addition, input files are put in a tar.gz (so they can be put back after
    an upload) and the configuration file is extracted.
    """
    if not args.pack:
        logging.critical("setup/create needs the pack filename")
        sys.exit(1)

    pack = Path(args.pack[0])
    target = Path(args.target[0])
    if target.exists():
        logging.critical("Target directory exists")
        sys.exit(1)

    if DefaultAbstractPath is not PosixPath:
        logging.critical("Not unpacking on POSIX system")
        sys.exit(1)

    signals.pre_setup(target=target, pack=pack)

    # We can only restore owner/group of files if running as root
    restore_owner = should_restore_owner(args.restore_owner)

    # Unpacks configuration file
    tar = tarfile.open(str(pack), 'r:*')
    member = tar.getmember('METADATA/config.yml')
    member.name = 'config.yml'
    tar.extract(member, str(target))

    # Loads config
    runs, packages, other_files = load_config_file(target / 'config.yml', True)

    target.mkdir()
    root = (target / 'root').absolute()
    root.mkdir()

    # Checks that everything was packed
    packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
    if packages_not_packed:
        record_usage(chroot_missing_pkgs=True)
        logging.warning("According to configuration, some files were left out "
                        "because they belong to the following packages:%s"
                        "\nWill copy files from HOST SYSTEM",
                        ''.join('\n    %s' % pkg
                                for pkg in packages_not_packed))
        missing_files = False
        for pkg in packages_not_packed:
            for f in pkg.files:
                f = Path(f.path)
                if not f.exists():
                    logging.error(
                            "Missing file %s (from package %s) on host, "
                            "experiment will probably miss it",
                            f, pkg.name)
                    missing_files = True
                    continue
                dest = join_root(root, f)
                dest.parent.mkdir(parents=True)
                if f.is_link():
                    dest.symlink(f.read_link())
                else:
                    f.copy(dest)
                if restore_owner:
                    stat = f.stat()
                    dest.chown(stat.st_uid, stat.st_gid)
        if missing_files:
            record_usage(chroot_mising_files=True)

    # Unpacks files
    if any('..' in m.name or m.name.startswith('/') for m in tar.getmembers()):
        logging.critical("Tar archive contains invalid pathnames")
        sys.exit(1)
    members = [m for m in tar.getmembers() if m.name.startswith('DATA/')]
    for m in members:
        m.name = m.name[5:]
    if not restore_owner:
        uid = os.getuid()
        gid = os.getgid()
        for m in members:
            m.uid = uid
            m.gid = gid
    logging.info("Extracting files...")
    tar.extractall(str(root), members)
    tar.close()

    # Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
    sh_path = join_root(root, Path('/bin/sh'))
    env_path = join_root(root, Path('/usr/bin/env'))
    if not sh_path.lexists() or not env_path.lexists():
        logging.info("Setting up busybox...")
        busybox_path = join_root(root, Path('/bin/busybox'))
        busybox_path.parent.mkdir(parents=True)
        with make_dir_writable(join_root(root, Path('/bin'))):
            download_file(busybox_url(runs[0]['architecture']),
                          busybox_path)
            busybox_path.chmod(0o755)
            if not sh_path.lexists():
                sh_path.parent.mkdir(parents=True)
                sh_path.symlink('/bin/busybox')
            if not env_path.lexists():
                env_path.parent.mkdir(parents=True)
                env_path.symlink('/bin/busybox')

    # Original input files, so upload can restore them
    if any(run['input_files'] for run in runs):
        logging.info("Packing up original input files...")
        inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
        for run in runs:
            for ifile in itervalues(run['input_files']):
                inputtar.add(str(join_root(root, PosixPath(ifile))),
                             str(PosixPath(ifile)))
        inputtar.close()

    # Meta-data for reprounzip
    write_dict(target / '.reprounzip', {}, 'chroot')

    signals.post_setup(target=target)
Ejemplo n.º 6
0
def chroot_create(args):
    """Unpacks the experiment in a folder so it can be run with chroot.

    All the files in the pack are unpacked; system files are copied only if
    they were not packed, and busybox is installed if /bin/sh wasn't packed.

    In addition, input files are put in a tar.gz (so they can be put back after
    an upload) and the configuration file is extracted.
    """
    if not args.pack:
        logging.critical("setup/create needs the pack filename")
        sys.exit(1)

    pack = Path(args.pack[0])
    target = Path(args.target[0])
    if target.exists():
        logging.critical("Target directory exists")
        sys.exit(1)

    if DefaultAbstractPath is not PosixPath:
        logging.critical("Not unpacking on POSIX system")
        sys.exit(1)

    signals.pre_setup(target=target, pack=pack)

    # We can only restore owner/group of files if running as root
    restore_owner = should_restore_owner(args.restore_owner)

    # Unpacks configuration file
    tar = tarfile.open(str(pack), 'r:*')
    member = tar.getmember('METADATA/config.yml')
    member.name = 'config.yml'
    tar.extract(member, str(target))

    # Loads config
    runs, packages, other_files = load_config_file(target / 'config.yml', True)

    target.mkdir()
    root = (target / 'root').absolute()
    root.mkdir()

    # Checks that everything was packed
    packages_not_packed = [pkg for pkg in packages if not pkg.packfiles]
    if packages_not_packed:
        logging.warning(
            "According to configuration, some files were left out "
            "because they belong to the following packages:%s"
            "\nWill copy files from HOST SYSTEM",
            ''.join('\n    %s' % pkg for pkg in packages_not_packed))
        for pkg in packages_not_packed:
            for f in pkg.files:
                f = Path(f.path)
                if not f.exists():
                    logging.error(
                        "Missing file %s (from package %s) on host, "
                        "experiment will probably miss it", f, pkg.name)
                dest = join_root(root, f)
                dest.parent.mkdir(parents=True)
                if f.is_link():
                    dest.symlink(f.read_link())
                else:
                    f.copy(dest)
                if restore_owner:
                    stat = f.stat()
                    dest.chown(stat.st_uid, stat.st_gid)

    # Unpacks files
    if any('..' in m.name or m.name.startswith('/') for m in tar.getmembers()):
        logging.critical("Tar archive contains invalid pathnames")
        sys.exit(1)
    members = [m for m in tar.getmembers() if m.name.startswith('DATA/')]
    for m in members:
        m.name = m.name[5:]
    if not restore_owner:
        uid = os.getuid()
        gid = os.getgid()
        for m in members:
            m.uid = uid
            m.gid = gid
    logging.info("Extracting files...")
    tar.extractall(str(root), members)
    tar.close()

    # Sets up /bin/sh and /usr/bin/env, downloading busybox if necessary
    sh_path = join_root(root, Path('/bin/sh'))
    env_path = join_root(root, Path('/usr/bin/env'))
    if not sh_path.lexists() or not env_path.lexists():
        logging.info("Setting up busybox...")
        busybox_path = join_root(root, Path('/bin/busybox'))
        busybox_path.parent.mkdir(parents=True)
        with make_dir_writable(join_root(root, Path('/bin'))):
            download_file(busybox_url(runs[0]['architecture']), busybox_path)
            busybox_path.chmod(0o755)
            if not sh_path.lexists():
                sh_path.parent.mkdir(parents=True)
                sh_path.symlink('/bin/busybox')
            if not env_path.lexists():
                env_path.parent.mkdir(parents=True)
                env_path.symlink('/bin/busybox')

    # Original input files, so upload can restore them
    if any(run['input_files'] for run in runs):
        logging.info("Packing up original input files...")
        inputtar = tarfile.open(str(target / 'inputs.tar.gz'), 'w:gz')
        for run in runs:
            for ifile in itervalues(run['input_files']):
                inputtar.add(str(join_root(root, PosixPath(ifile))),
                             str(PosixPath(ifile)))
        inputtar.close()

    # Meta-data for reprounzip
    write_dict(target / '.reprounzip', {}, 'chroot')

    signals.post_setup(target=target)