def test_wrap_list(self, resolwe_mock):
process = self.process_mock
Resolwe._process_inputs(resolwe_mock, {"src_list": ["/path/to/file"]}, process)
resolwe_mock._process_file_field.assert_called_once_with('/path/to/file')
resolwe_mock.reset_mock()
Resolwe._process_inputs(resolwe_mock, {"src_list": "/path/to/file"}, process)
resolwe_mock._process_file_field.assert_called_once_with('/path/to/file')
def test_bad_inputs(self, resolwe_mock, os_mock):
# Good file, upload fails becouse of bad input keyword
os_mock.path.isfile.return_value = True
process = self.process_mock
resolwe_mock._upload_file = MagicMock(return_value=None)
message = r'Field .* not in process .* input schema.'
with self.assertRaisesRegex(ValidationError, message):
Resolwe._process_inputs(resolwe_mock, {"bad_key": "/good/path/to/file"}, process)
def test_bad_inputs(self, resolwe_mock, os_mock):
# Good file, upload fails becouse of bad input keyword
os_mock.path.isfile.return_value = True
process = self.process_json[0]
resolwe_mock._upload_file = MagicMock(return_value=None)
message = r'Field .* not in process .* input schema.'
with six.assertRaisesRegex(self, ValidationError, message):
Resolwe._process_inputs(resolwe_mock, {"bad_key": "/good/path/to/file"}, process)
def test_wrap_list(self, resolwe_mock):
process = self.process_json[0]
Resolwe._process_inputs(resolwe_mock, {"src_list": ["/path/to/file"]}, process)
resolwe_mock._process_file_field.assert_called_once_with('/path/to/file')
resolwe_mock.reset_mock()
Resolwe._process_inputs(resolwe_mock, {"src_list": "/path/to/file"}, process)
resolwe_mock._process_file_field.assert_called_once_with('/path/to/file')
def test_dehydrate_data(self, resolwe_mock):
data_obj = Data(id=1, resolwe=MagicMock())
data_obj.id = 1 # this is overriden when initialized
process = self.process_mock
result = Resolwe._process_inputs(resolwe_mock, {"genome": data_obj}, process)
self.assertEqual(result, {'genome': 1})
result = Resolwe._process_inputs(resolwe_mock, {"reads": [data_obj]}, process)
self.assertEqual(result, {'reads': [1]})
def test_dehydrate_data(self, resolwe_mock):
data_obj = Data(id=1, resolwe=MagicMock())
data_obj.id = 1 # this is overriden when initialized
process = self.process_json[0]
result = Resolwe._process_inputs(resolwe_mock, {"genome": data_obj}, process)
self.assertEqual(result, {'genome': 1})
result = Resolwe._process_inputs(resolwe_mock, {"reads": [data_obj]}, process)
self.assertEqual(result, {'reads': [1]})
def test_dehydrate_data(self, resolwe_mock, copy_mock):
data_obj = Data(id=1, resolwe=MagicMock())
data_obj.id = 1 # this is overriden when initialized
process = self.process_mock
# I appears it is not possible to deepcopy MagicMocks so we just patch
# the deepcopy functionality:
copy_mock.deepcopy = MagicMock(return_value={"genome": data_obj})
result = Resolwe._process_inputs(resolwe_mock, {"genome": data_obj}, process)
self.assertEqual(result, {'genome': 1})
# I appears it is not possible to deepcopy MagicMocks so we just patch
# the deepcopy functionality:
copy_mock.deepcopy = MagicMock(return_value={"reads": data_obj})
result = Resolwe._process_inputs(resolwe_mock, {"reads": [data_obj]}, process)
self.assertEqual(result, {'reads': [1]})
def test_dehydrate_data(self, resolwe_mock, copy_mock):
data_obj = Data(id=1, resolwe=MagicMock())
data_obj.id = 1 # this is overriden when initialized
process = self.process_mock
# I appears it is not possible to deepcopy MagicMocks so we just patch
# the deepcopy functionality:
copy_mock.deepcopy = MagicMock(return_value={"genome": data_obj})
result = Resolwe._process_inputs(resolwe_mock, {"genome": data_obj},
process)
self.assertEqual(result, {'genome': 1})
# I appears it is not possible to deepcopy MagicMocks so we just patch
# the deepcopy functionality:
copy_mock.deepcopy = MagicMock(return_value={"reads": data_obj})
result = Resolwe._process_inputs(resolwe_mock, {"reads": [data_obj]},
process)
self.assertEqual(result, {'reads': [1]})
def test_keep_input(self, resolwe_mock):
process = self.process_mock
input_dict = {"src_list": ["/path/to/file"]}
Resolwe._process_inputs(resolwe_mock, input_dict, process)
self.assertEqual(input_dict, {"src_list": ["/path/to/file"]})
def test_keep_input(self, resolwe_mock):
process = self.process_mock
input_dict = {"src_list": ["/path/to/file"]}
Resolwe._process_inputs(resolwe_mock, input_dict, process)
self.assertEqual(input_dict, {"src_list": ["/path/to/file"]})