def getAllAPI():
"""
get all the Contig on the database
:return: list of Contig
:rtype: vector[ContigJson]
"""
list_contigs = ContigAPI().get_all()
schema = ContigSchema()
results = schema.load(list_contigs, many=True)
return results
def setContig(self):
"""
set new contig
:return: new contig completed with the id
:rtype: ContigJson
"""
schema = ContigSchema(only=['id_db_online','sequence_DNA','fasta_head','organism'])
jsonContig = schema.dump(self)
resultsCreation = ContigAPI().set_contig(jsonData = jsonContig.data)
schema = ContigSchema()
results = schema.load(resultsCreation)
return results[0]
def getByOrganismID(organism_id: int):
"""
get all contigs of a given organism
:param organism_id: organism ID
:type organism_id: int
:return: all the contigs of the given organism id
:rtype: list[ContigJson]
"""
resultsCreation = ContigAPI().getByOrganismID(organism_id=organism_id)
schema = ContigSchema()
results = schema.load(resultsCreation, many=True)
return results