def peptideEncodingList(genome, aminoAcidString):
patternLen = 3 * len(aminoAcidString)
patternEncodingPeptide = []
for i in range(0, len(genome) - patternLen):
pattern = genome[i : i + patternLen]
rcPattern = "".join(reverseComplement(pattern))
if "".join(rNAStringToAminoAcidString(pattern.replace("T", "U"))) == aminoAcidString:
patternEncodingPeptide.append(pattern)
if "".join(rNAStringToAminoAcidString(rcPattern.replace("T", "U"))) == aminoAcidString:
patternEncodingPeptide.append(pattern)
return patternEncodingPeptide
def test_reverseComplementProblem(self):
text = "AAAACCCGGT"
self.assertEqual("ACCGGGTTTT", "".join(reverseComplement(text)))
