def test_select_gsms_to_transfer_all_processed(self, mock_is_processed):
mock_is_processed.return_value = False
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
all_gsms = [m1, m2]
transferred_gsms = ['GSM1']
self.assertEqual(
RP_T.select_gsms_to_transfer(all_gsms, transferred_gsms,
'l_top_outdir', 1e6, 5), [])
def test_select_gsms_to_transfer_all_processed(self, mock_is_processed):
mock_is_processed.return_value = False
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
all_gsms = [m1, m2]
transferred_gsms = ['GSM1']
self.assertEqual(
RP_T.select_gsms_to_transfer(
all_gsms, transferred_gsms, 'l_top_outdir', 1e6, 5), [])
def test_select_gsms_to_transfer_with_no_GSM_already_transferred(
self, mock_is_processed, mock_estimate_rsem_usage):
mock_is_processed.return_value = True
mock_estimate_rsem_usage.return_value = 7e5
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
all_gsms = [m1, m2]
transferred_gsms = []
self.assertEqual(
RP_T.select_gsms_to_transfer(all_gsms, transferred_gsms,
'l_top_outdir', 1e6, 5), [m1])
def test_select_gsms_to_transfer_with_no_GSM_already_transferred(self, mock_is_processed,
mock_estimate_rsem_usage):
mock_is_processed.return_value = True
mock_estimate_rsem_usage.return_value = 7e5
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
all_gsms = [m1, m2]
transferred_gsms = []
self.assertEqual(
RP_T.select_gsms_to_transfer(
all_gsms, transferred_gsms, 'l_top_outdir', 1e6, 5), [m1])
