def dict_to_yaml(data, width=None, sort=False):
""" Convert dictionary into yaml """
output = StringIO()
# Set formatting options
yaml = YAML()
yaml.indent(mapping=4, sequence=4, offset=2)
yaml.default_flow_style = False
yaml.allow_unicode = True
yaml.encoding = 'utf-8'
yaml.width = width
# Make sure that multiline strings keep the formatting
data = copy.deepcopy(data)
scalarstring.walk_tree(data)
# Sort the data https://stackoverflow.com/a/40227545
if sort:
sorted_data = CommentedMap()
for key in sorted(data):
sorted_data[key] = data[key]
data = sorted_data
yaml.dump(data, output)
return output.getvalue()
def update_environment_yml():
"""Update conda_dev_env.yml file for conda."""
import re
from ruamel.yaml import YAML
from ruamel.yaml.comments import CommentedMap, CommentedSeq
environment_filename = "conda_dev_env.yml"
cmap = CommentedMap()
cmap.yaml_set_start_comment(
("Usage: conda env create -n myenvname -f {} python=3.6\n"
" conda activate myenvname\n"
" pip install --no-deps -e .".format(environment_filename)))
cmap["name"] = "aiida_crystal17"
cmap["channels"] = CommentedSeq(["conda-forge", "cjs14"])
cmap["channels"].yaml_add_eol_comment("for sqlalchemy-diff and pgtest", 1)
cmap["dependencies"] = dmap = CommentedSeq()
# additional packages
dmap.append("pip")
dmap.append("aiida-core.services")
# fix incompatibilities between conda and pypi
replacements = {"pre-commit": "pre_commit"}
setup_json = get_setup_json()
for base, key in [
(None, "install_requires"),
("extras_require", "testing"),
("extras_require", "code_style"),
("extras_require", "docs"),
]:
requirements = setup_json.get(base, setup_json)[key]
count = 0
for req in sorted(requirements, key=lambda x: x.lower()):
# skip packages required for specific python versions < 3
if re.findall("python_version\\s*\\<\\s*\\'?3", req):
continue
req = req.split(";")[0]
for (regex, replacement) in iter(replacements.items()):
req = re.sub(regex, replacement, req)
count += 1
dmap.append(req.lower())
dmap.yaml_set_comment_before_after_key(len(dmap) - count, before=key)
yaml = YAML(typ="rt")
yaml.default_flow_style = False
yaml.encoding = "utf-8"
yaml.allow_unicode = True
file_path = os.path.join(ROOT_DIR, environment_filename)
with open(file_path, "w") as env_file:
yaml.dump(cmap, env_file)
def update_environment_yml():
"""
Updates conda_dev_env.yml file for conda.
"""
import re
from ruamel.yaml.comments import CommentedMap, CommentedSeq
from ruamel.yaml import YAML
environment_filename = 'conda_dev_env.yml'
cmap = CommentedMap()
cmap.yaml_set_start_comment(
'Usage: conda env create -n myenvname -f {} python=3.6'.format(
environment_filename))
cmap['name'] = 'aiida_icl'
cmap['channels'] = CommentedSeq(['conda-forge', 'cjs'])
cmap['channels'].yaml_add_eol_comment('for sqlalchemy-diff and pgtest', 1)
cmap['dependencies'] = dmap = CommentedSeq()
# fix incompatibilities between conda and pypi
replacements = {}
setup_json = get_setup_json()
for base, key in [(None, 'install_requires'),
('extras_require', 'testing'),
('extras_require', 'code_style')]:
requirements = setup_json.get(base, setup_json)[key]
count = 0
for req in sorted(requirements, key=lambda x: x.lower()):
# skip packages required for specific python versions < 3
if re.findall("python_version\\s*\\<\\s*\\'?3", req):
continue
req = req.split(';')[0]
for (regex, replacement) in iter(replacements.items()):
req = re.sub(regex, replacement, req)
count += 1
dmap.append(req.lower())
dmap.yaml_set_comment_before_after_key(len(dmap) - count, before=key)
yaml = YAML(typ='rt')
yaml.default_flow_style = False
yaml.encoding = 'utf-8'
yaml.allow_unicode = True
file_path = os.path.join(ROOT_DIR, environment_filename)
with open(file_path, 'w') as env_file:
yaml.dump(cmap, env_file)
def write_yaml(filename:str, dictionary:dict):
""" Function to convert a dictionary into a YAML file
"""
yml = YAML()
yml.explicit_start = True
yml.default_flow_style = False
yml.encoding = "utf-8" # default when using YAML() or YAML(typ="rt")
yml.allow_unicode = True # always default in the new API
yml.errors = "strict"
yml.indent(sequence=4, offset=2)
yml.explicit_end = True
if isinstance(dictionary,dict):
with open(filename, 'w') as outfile:
print(filename)
yml.dump(dictionary, outfile)
else:
raise Exception('its not a dictionary')
s = re.sub(r"\'\'", r"'",
s) # remove the double single quotes from ''hashi_vault''
s = re.sub(
r"(\'\"|\"\')", r'"', s
) # remove '" or "' from the begining and end of ansible_password section
s = re.sub(r"\'(\d*)\'", r"\1",
s) # remove the single quotes from '0:' and '1:'
return s
yaml = YAML(typ='safe')
yaml.default_flow_style = False
for root, dirs, files in os.walk("./"):
for file in files:
if file.endswith(".json"):
dir = root.split(os.path.sep)[-1]
if dir != "terraform":
with open(root + '/' + file, 'r') as stream:
try:
filename = os.path.splitext(file)[0]
with open(root + '/' + filename + '.yml',
'w') as outfile:
#yaml.dump(json.load(stream), outfile)
yaml.encoding = None
yaml.dump(yaml.load(stream), outfile, transform=tr)
print('Yaml file created: ' + root + '/' +
filename + '.yml')
os.remove(root + '/' + file)
except:
print("There is an issue...")
#Network request serve settings
class RequestHandler(http.server.SimpleHTTPRequestHandler):
def do_GET(self):
if self.path == '/':
self.path = GEN_FILE
return http.server.SimpleHTTPRequestHandler.do_GET(self)
PORT = 8080
HANDLER = RequestHandler
#Yaml configuration
YML = YAML()
YML.indent(mapping=2, sequence=4, offset=2)
YML.encoding = "utf-8"
YML.allow_unicode = True
def get_config():
with open(MAIN_DIR + '/config/cloud-config.yml', 'r') as sys_config_file:
sys_config = sys_config_file.read()
return YML.load(sys_config)
def write_keys(sys_yaml):
if not 'ssh_authorized_keys' in sys_yaml:
sys_yaml['ssh_authorized_keys'] = list()
try:
with open(MAIN_DIR + '/config/pub_keys', 'r') as pub_key_file:
for key in pub_key_file:
