def test_convert_object_reference_to_sample():
object_id = create_object_of_type(
sampledb.models.ActionType.SAMPLE_CREATION)
data = {'_type': 'object_reference', 'object_id': object_id}
previous_schema = {'type': 'object_reference', 'title': 'Test'}
new_schema = {'type': 'sample', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
previous_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': None
}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
previous_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': sampledb.models.ActionType.SAMPLE_CREATION
}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
def test_convert_object_reference_to_measurement():
object_id = create_object_of_type(sampledb.models.ActionType.MEASUREMENT)
data = {'_type': 'object_reference', 'object_id': object_id}
previous_schema = {'type': 'object_reference', 'title': 'Test'}
new_schema = {'type': 'measurement', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
previous_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': None
}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
previous_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': sampledb.models.ActionType.MEASUREMENT
}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
def test_convert_schema_with_unknown_type():
data = {}
previous_schema = {
'type': 'unknown',
'title': 'Test'
}
new_schema = {
'type': 'unknown',
'title': 'Test'
}
with pytest.raises(SchemaError):
convert_to_schema(data, previous_schema, new_schema)
def test_convert_array():
data = [{
'_type': 'text',
'text': 'Example, Text'
}, {
'_type': 'text',
'text': 'Example Text'
}]
previous_schema = {
'type': 'array',
'title': 'Test',
'items': {
'type': 'text'
}
}
new_schema = {'type': 'array', 'title': 'Test', 'items': {'type': 'tags'}}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == [{
'_type': 'tags',
'tags': ['example', 'text']
}, {
'_type': 'tags',
'tags': ['example text']
}]
assert not warnings
def test_convert_incompatible_schemas():
data = {'_type': 'text', 'text': 'Example Text'}
previous_schema = {'type': 'text', 'title': 'Test'}
new_schema = {'type': 'bool', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data is None
assert warnings
def test_convert_same_type():
data = {'_type': 'text', 'text': 'Example Text'}
previous_schema = {'type': 'text', 'title': 'Test', 'minLength': 1}
new_schema = {'type': 'text', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == data
assert not warnings
def test_convert_text_to_tags():
data = {'_type': 'text', 'text': 'Tag1 ,Tag2, Tag3'}
previous_schema = {'type': 'text', 'title': 'Test'}
new_schema = {'type': 'tags', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {'_type': 'tags', 'tags': ['tag1', 'tag2', 'tag3']}
assert not warnings
def test_convert_object():
data = {
'name': {
'_type': 'text',
'text': 'Example, Text'
},
'keywords': {
'_type': 'text',
'text': 'tag1, tag2'
}
}
previous_schema = {
'type': 'object',
'title': 'Test',
'properties': {
'name': {
'title': 'Name',
'type': 'text'
},
'keywords': {
'title': 'Keywords',
'type': 'text'
}
}
}
new_schema = {
'type': 'object',
'title': 'Test',
'properties': {
'name': {
'title': 'Name',
'type': 'text'
},
'keywords': {
'title': 'Keywords',
'type': 'tags'
}
}
}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {
'name': {
'_type': 'text',
'text': 'Example, Text'
},
'keywords': {
'_type': 'tags',
'tags': ['tag1', 'tag2']
}
}
assert not warnings
def test_convert_quantities_differing_dimensionality():
data = {
'_type': 'quantity',
'dimensionality': '[length]',
'magnitude_in_base_units': 1,
'units': 'm'
}
previous_schema = {'type': 'quantity', 'title': 'Test', 'units': 'm'}
new_schema = {'type': 'quantity', 'title': 'Test', 'units': 'ms'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data is None
assert warnings
def test_convert_sample_to_object_reference():
object_id = create_object_of_type(
sampledb.models.ActionType.SAMPLE_CREATION)
data = {'_type': 'sample', 'object_id': object_id}
previous_schema = {'type': 'sample', 'title': 'Test'}
new_schema = {'type': 'object_reference', 'title': 'Test'}
validate(data, previous_schema)
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {'_type': 'object_reference', 'object_id': object_id}
assert not warnings
new_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': None
}
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {'_type': 'object_reference', 'object_id': object_id}
assert not warnings
new_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': sampledb.models.ActionType.SAMPLE_CREATION
}
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {'_type': 'object_reference', 'object_id': object_id}
assert not warnings
new_schema = {
'type': 'object_reference',
'title': 'Test',
'action_type_id': sampledb.models.ActionType.MEASUREMENT
}
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data is None
assert warnings
new_schema = {
'type': 'object_reference',
'title': 'Test',
'action_id': sampledb.logic.objects.get_object(object_id).action_id
}
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data == {'_type': 'object_reference', 'object_id': object_id}
assert not warnings
new_schema = {
'type': 'object_reference',
'title': 'Test',
'action_id': sampledb.logic.objects.get_object(object_id).action_id + 1
}
new_data, warnings = convert_to_schema(data, previous_schema, new_schema)
assert new_data is None
assert warnings
