def test_addImplementation(self):
doc = sbol.Document()
with self.assertRaises(Exception):
# This raises an attribute exception right now, and that
# should change in the future.
doc.addImplementation('foo')
impl = sbol.Implementation(uri='foo')
doc.addImplementation(impl)
self.assertEqual(doc.implementations[0], impl)
impl2 = sbol.Implementation(uri='bar')
impl3 = sbol.Implementation(uri='baz')
doc.addImplementation([impl2, impl3])
self.assertEqual(doc.implementations[1], impl2)
self.assertEqual(doc.implementations[2], impl3)
def test_getImplementation(self):
homespace = 'http://sbols.org/sbol_test'
sbol.setHomespace(homespace)
doc = sbol.Document()
impl = sbol.Implementation(uri='foo')
doc.addImplementation(impl)
impl2 = sbol.Implementation(uri='bar')
doc.addImplementation(impl2)
# Get by index
self.assertEqual(doc.getImplementation(0), impl)
self.assertEqual(doc.getImplementation(1), impl2)
# Get by short URI
self.assertEqual(doc.getImplementation('foo'), impl)
self.assertEqual(doc.getImplementation('bar'), impl2)
# Get by full URI
uri_template = '{}/Implementation/{}/1'
uri = rdflib.URIRef(uri_template.format(homespace, 'foo'))
self.assertEqual(doc.getImplementation(uri), impl)
uri = rdflib.URIRef(uri_template.format(homespace, 'bar'))
self.assertEqual(doc.getImplementation(uri), impl2)
def test2ArgConstructor(self):
name = 'foo'
version = '3'
c = sbol.Implementation(name, version)
expected_identity = self.make_identity(self.homespace, name, version)
self.assertEqual(c.identity, expected_identity)
self.assertEqual(c.displayId, name)
self.assertEqual(c.version, version)
self.assertEqual(c.rdf_type, sbol.SBOL_IMPLEMENTATION)
doc = sbol.Document()
doc.addImplementation(c)
self.assertEqual(len(doc.implementations), 1)
def testEmptyConstructor(self):
# This is the default name in the implementation constructor
name = 'example'
c = sbol.Implementation()
expected_identity = self.make_identity(self.homespace, name,
sbol.VERSION_STRING)
self.assertEqual(c.identity, expected_identity)
self.assertEqual(c.displayId, name)
self.assertEqual(c.version, sbol.VERSION_STRING)
self.assertEqual(c.rdf_type, sbol.SBOL_IMPLEMENTATION)
doc = sbol.Document()
doc.addImplementation(c)
self.assertEqual(len(doc.implementations), 1)
def test3ArgConstructor(self):
name = 'foo'
version = '3'
rdf_type = sbol.SBOL_IMPLEMENTATION + '2'
c = sbol.Implementation(name, version, type_uri=rdf_type)
expected_identity = self.make_identity(self.homespace, name, version,
'Implementation2')
self.assertEqual(c.identity, expected_identity)
self.assertEqual(c.displayId, name)
self.assertEqual(c.version, version)
self.assertEqual(c.rdf_type, rdf_type)
# Verify that when added to a document, this implementation is
# not in the list of implementations. That's because the rdf_type
# is not SBOL_IMPLEMENTATION.
doc = sbol.Document()
doc.addImplementation(c)
self.assertEqual(len(doc.implementations), 0)
def impl_gen(count):
for i in range(count):
uri = 'impl{}'.format(i)
yield sbol.Implementation(uri=uri)