Ejemplo n.º 1
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def test_scale_rep(count_matrix_format, zero_center):
    """
    Test that it doesn't matter where the array being scaled is in the anndata object.
    """
    X = count_matrix_format(sp.random(100, 200, density=0.3).toarray())
    check_rep_mutation(sc.pp.scale, X, zero_center=zero_center)
    check_rep_results(sc.pp.scale, X, zero_center=zero_center)
Ejemplo n.º 2
0
def test_log1p_rep(count_matrix_format, base):
    X = count_matrix_format(sp.random(100, 200, density=0.3).toarray())
    check_rep_mutation(sc.pp.log1p, X, base=base)
    check_rep_results(sc.pp.log1p, X, base=base)
Ejemplo n.º 3
0
def test_normalize_total_rep(typ, dtype):
    # Test that layer kwarg works
    X = typ(sparse.random(100, 50, format="csr", density=0.2, dtype=dtype))
    check_rep_mutation(sc.pp.normalize_total, X, fields=["layer"])
    check_rep_results(sc.pp.normalize_total, X, fields=["layer"])