def test_local_eml_v2p1p0(self):
"""
SCENARIO: Run the validator against a local EML v2.0.1 file.
EXPECTED RESULT: The format ID is eml://ecoinformatics.org/eml-2.0.1
"""
content = ir.read_binary('tests.data.eml.v2p0p1', 'example.xml')
file = io.BytesIO(content)
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
expected = 'eml://ecoinformatics.org/eml-2.0.1'
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_invalid_url(self):
"""
SCENARIO: An invalid URL is provided. A HTTP code 400 results.
EXPECTED RESULT: The HTTP error is logged. No exception is
propagated, though.
"""
validator = XMLValidator()
self.setUpRequestsMocking(validator, status_codes=[400])
with self.assertLogs(logger=validator.logger, level='DEBUG') as cm:
validator.validate('https://www.acme.org/a.xml')
self.assertDebugLogMessage(cm.output, 'HTTPError')
self.assertErrorLogMessage(cm.output, '400 Client Error')
def test_bcodmo(self):
"""
SCENARIO: A valid BCODMO file is given.
SCENARIO: Validates to noaa gmd.
"""
validator = XMLValidator()
path = pathlib.Path('tests/data/bcodmo/67937/isometadata.xml')
gmd_noaa = 'http://www.isotc211.org/2005/gmd-noaa'
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(path, format_id=gmd_noaa)
self.assertErrorLogCallCount(cm.output, n=0)
self.assertLogMessage(cm.output, gmd_noaa, level='INFO')
def test_file_like_object(self):
"""
SCENARIO: A file on the local file system is passed into the
validator. The file contains valid ISO 19115 metadata.
SCENARIO: no errors
"""
validator = XMLValidator()
content = ir.read_binary('tests.data.ieda', '600121iso.xml')
file = io.BytesIO(content)
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
gmd = 'http://www.isotc211.org/2005/gmd'
self.assertLogMessage(cm.output, gmd, level='INFO')
def test_local_eml_v200(self):
"""
SCENARIO: Run the validator against a local EML v2.0.0 file. The
DOI is doi:10.5063/AA/knb.165.2.
EXPECTED RESULT: Validates to "eml://ecoinformatics.org/eml-2.0.0.
"""
content = ir.read_binary('tests.data.eml.v2p0p0', 'example.xml')
file = io.BytesIO(content)
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
expected = "eml://ecoinformatics.org/eml-2.0.0"
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_scimeta_error(self):
"""
SCENARIO: A file on the local file system is passed into the
validator. The file
EXPECTED RESULT: A d1_validate.SciMetaError is detected.
"""
validator = XMLValidator()
content = ir.read_binary('tests.data.arm', 'nsasondewnpnS01.b1.xml')
file = io.BytesIO(content)
with self.assertLogs(logger=validator.logger, level='DEBUG') as cm:
validator.validate(file)
self.assertLogMessage(cm.output, 'SciMetaError', level='DEBUG')
self.assertLogMessage(cm.output, 'XML document does not validate',
level='ERROR')
def test_local_oai_2p0_oai_dc(self):
"""
SCENARIO: Run the validator against a local OAI-PMH Dublin
Core v2.0, with online related resource file.
EXPECTED RESULT: The format ID is
http://www.openarchives.org/OAI/2.0/oai_dc/
"""
content = ir.read_binary('tests.data.oai.2p0.oai_dc', 'example.xml')
file = io.BytesIO(content)
expected = 'http://www.openarchives.org/OAI/2.0/oai_dc/'
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_local_onedcx_v1p0(self):
"""
SCENARIO: Run the validator against a local DataONE Dublin Core
Extended v1.0 file.
EXPECTED RESULT: The format ID is
http://ns.dataone.org/metadata/schema/onedcx/v1.0
"""
content = ir.read_binary('tests.data.onedcx.v1p0', 'example.xml')
file = io.BytesIO(content)
validator = XMLValidator()
expected = 'http://ns.dataone.org/metadata/schema/onedcx/v1.0'
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_local_pangaea_file(self):
"""
SCENARIO: Run the validator against a local Pangaea XML file.
EXPECTED RESULT: no errors
"""
content = ir.read_binary('tests.data.pangaea',
'10p1594_pangaea.729391.xml')
file = io.BytesIO(content)
validator = XMLValidator()
expected = "http://www.isotc211.org/2005/gmd-pangaea"
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_file(self):
"""
SCENARIO: A valid pathlib.Path object is passed into the
validator. The file contains valid ISO 19115 metadata.
SCENARIO: Validates to regular gmd.
"""
validator = XMLValidator()
path = str(pathlib.Path('tests/data/ieda/600121iso.xml'))
gmd = 'http://www.isotc211.org/2005/gmd'
gmd_noaa = 'http://www.isotc211.org/2005/gmd-noaa'
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(path)
self.assertLogMessage(cm.output, gmd, level='INFO')
self.assertLogMessage(cm.output, gmd_noaa, level='INFO')
def test__waterml_v1p1(self):
"""
SCENARIO: Run the validator against a local WaterML file. We don't
support that yet. Try to validate it as
http://www.openarchives.org/OAI/2.0/oai_dc/ , which it is not.
EXPECTED RESULT: The error is logged.
"""
content = ir.read_binary('tests.data.waterML.v1p1', 'example.xml')
file = io.BytesIO(content)
expected = (
'No matching global declaration available for the validation root.'
)
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file, format_id=expected)
self.assertErrorLogMessage(cm.output, expected)
def test_file_like_object_but_invalid_xml(self):
"""
SCENARIO: A file on the local file system is passed into the
validator. The file contains invalid XML, which is invalid even before
one starts to consider metadata standards.
EXPECTED RESULT: An lxml XMLSyntaxError is detected at the DEBUG
level, with the text of the error showing up at the ERROR level.
"""
validator = XMLValidator()
content = ir.read_binary('tests.data.arm', 'nsanimfraod1michC2.c1.xml')
file = io.BytesIO(content)
with self.assertLogs(logger=validator.logger, level='DEBUG') as cm:
validator.validate(file)
self.assertLogMessage(cm.output, 'XMLSyntaxError', level='DEBUG')
self.assertLogMessage(cm.output, 'xmlParseEntityRef: no name',
level='ERROR')
def test_url(self):
"""
SCENARIO: A valid URL of a valid XML document is provided.
EXPECTED RESULT: no errors
"""
content = ir.read_binary('tests.data.arm',
'nsanimfraod1michC2.c1.fixed.xml')
url = 'https://www.acme.org/nsanimfraod1michC2.c1.fixed.xml'
validator = XMLValidator()
contents = [content]
self.setUpRequestsMocking(validator, contents=contents)
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(url)
self.assertErrorLogCallCount(cm.output, n=0)
def test_element_tree(self):
"""
SCENARIO: An ElementTree is passed into the validator. The document
is valid ISO 19115 metadata.
SCENARIO: Validates.
"""
validator = XMLValidator()
content = ir.read_binary('tests.data.arm',
'nsanimfraod1michC2.c1.fixed.xml')
doc = lxml.etree.parse(io.BytesIO(content))
gmd = 'http://www.isotc211.org/2005/gmd'
gmd_noaa = 'http://www.isotc211.org/2005/gmd-noaa'
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(doc)
self.assertLogMessage(cm.output, gmd, level='INFO')
self.assertLogMessage(cm.output, gmd_noaa, level='INFO')
def test_local_dryad_v3p1(self):
"""
SCENARIO: Run the validator against a local dryad file.
EXPECTED RESULT: The format ID is http://datadryad.org/profile/v3.1
"""
content = ir.read_binary('tests.data.dryad.v3p1', 'example.xml')
file = io.BytesIO(content)
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
for expected in [
'http://datadryad.org/profile/v3.1',
'http://purl.org/dryad/terms/'
]:
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)
def test_local_gmd_noaa(self):
"""
SCENARIO: Run the validator against a local GMD NOAA file.
EXPECTED RESULT: It validates to regular gmd, but will also validate to
gmd-noaa.
"""
content = ir.read_binary('tests.data.gmd_noaa', 'example.xml')
file = io.BytesIO(content)
expected = [
'http://www.isotc211.org/2005/gmd',
'http://www.isotc211.org/2005/gmd-noaa'
]
validator = XMLValidator()
with self.assertLogs(logger=validator.logger, level='INFO') as cm:
validator.validate(file)
for item in expected:
self.assertLogMessage(cm.output, expected, level='INFO')
self.assertErrorLogCallCount(cm.output, n=0)