def test_name_index_equality():
db1 = ScreedSequenceDB(testfa)
db2 = ScreedSequenceDB_ByIndex(testfa)
# must use something other than the obj itself for comparison...
v1 = sorted([ (v.name, v.seq) for v in db1.itervalues() ])
v2 = sorted([ (v.name, v.seq) for v in db2.itervalues() ])
assert v1 == v2, (v1, v2)
def test_name_index_equality():
db1 = ScreedSequenceDB(testfa)
db2 = ScreedSequenceDB_ByIndex(testfa)
# must use something other than the obj itself for comparison...
v1 = sorted([ (v.name, v.seq) for v in db1.itervalues() ])
v2 = sorted([ (v.name, v.seq) for v in db2.itervalues() ])
assert v1 == v2, (v1, v2)
def test_index_iterator_methods():
db = ScreedSequenceDB_ByIndex(testfa)
# test the various iterator methods for equal results from db
m = sorted([ (x, db[x]) for x in db ])
n = sorted([ i for i in db.iteritems() ])
o = sorted([ (v.record.id, v) for v in db.itervalues() ])
assert m == n
assert m == o, (m, o)
def test_index_iterator_methods():
db = ScreedSequenceDB_ByIndex(testfa)
# test the various iterator methods for equal results from db
m = sorted([ (x, db[x]) for x in db ])
n = sorted([ i for i in db.iteritems() ])
o = sorted([ (v.record.id, v) for v in db.itervalues() ])
assert m == n
assert m == o, (m, o)
def test_seqinfodict_by_index():
db1 = ScreedSequenceDB_ByIndex(testfa)
sd = db1.seqInfoDict
m = sorted([ x for (x, y) in sd.iteritems() ])
n = sorted([ x for x in sd.iterkeys() ])
assert m == n, (m, n)
def test_pickle_ByIndex():
db = ScreedSequenceDB_ByIndex(testfa)
ofp = StringIO()
dump(db, ofp)
ifp = StringIO(ofp.getvalue())
db2 = load(ifp)
assert db.filepath == db2.filepath
