def process(dataset):
dv.cd(['', 'Experiments', experiment, dataset])
dv.open(1)
data = dv.get().asarray
params = dict(dv.get_parameters())
dp = dataProcessor(params)
dp.addData(data)
pwr,fluor = dp.process()
name = dv.new('scan',[('Power', 'dBm')],[('Counts','Counts/sec','Counts/sec')] )
dvParameters.saveParameters(dv, params)
dv.add_parameter('plotLive',True)
dv.add(np.vstack((pwr,fluor)).transpose())
dp.makePlot()
def process():
dv.open(1)
data = dv.get().asarray
params = dict(dv.get_parameters())
dp = dataProcessor.dataProcessor(params)
dp.addData(data)
#get information from processor and add it to data vault
pwr,fluor = dp.process()
dv.new('scan',[('Power', 'dBm')],[('Counts','Counts/sec','Counts/sec')] )
dvParameters.saveParameters(dv, params)
dv.add_parameter('plotLive',True)
dv.add(np.vstack((pwr,fluor)).transpose())
dp.makePlot()
def process():
dv.open(1)
data = dv.get().asarray
params = dict(dv.get_parameters())
dp = dataProcessor.dataProcessor(params)
dp.addData(data)
#get information from processor and add it to data vault
freq,fluor = dp.process()
dv.new('scan',[('Freq', 'MHz')],[('Counts','Counts/sec','Counts/sec')] )
dvParameters.saveParameters(dv, params)
dv.add_parameter('plotLive',True)
dv.add(np.vstack((freq,fluor)).transpose())
dp.makePlot()
def process(dataset):
dv.cd(['', 'Experiments', experiment, dataset])
dv.open(1)
data = dv.get().asarray
params = dict(dv.get_parameters())
dp = dataProcessor(params)
dp.addData(data)
pwr, fluor = dp.process()
name = dv.new('scan', [('Power', 'dBm')],
[('Counts', 'Counts/sec', 'Counts/sec')])
dvParameters.saveParameters(dv, params)
dv.add_parameter('plotLive', True)
dv.add(np.vstack((pwr, fluor)).transpose())
dp.makePlot()
def initialize():
#pulser sequence
seq = PulsedScan(pulser)
pulser.new_sequence()
seq.setVariables(**params)
seq.defineSequence()
pulser.program_sequence()
#set logic
pulser.switch_auto('axial', True) #high TTL corresponds to light ON
pulser.switch_auto('110DP', False) #high TTL corresponds to light OFF
pulser.switch_auto('866DP', False) #high TTL corresponds to light OFF
pulser.switch_manual('crystallization', False) #high TTL corresponds to light OFF
#set up data vault
dv.cd(['','Experiments', experimentName, dirappend], True)
dv.new('timetags',[('Power', 'dBm')],[('TimeTag','Sec','Sec')] )
params['cycleTime'] = seq.parameters.cycleTime
dvParameters.saveParameters(dv, params)
def initialize():
#pulser sequence
seq = PulsedScan(pulser)
pulser.new_sequence()
seq.setVariables(**params)
seq.defineSequence()
pulser.program_sequence()
#set logic
pulser.switch_auto('axial', True) #high TTL corresponds to light ON
pulser.switch_auto('110DP', False) #high TTL corresponds to light OFF
pulser.switch_auto('866DP', False) #high TTL corresponds to light OFF
pulser.switch_manual('crystallization', False) #high TTL corresponds to light OFF
#set up data vault
dv.cd(['','Experiments', experimentName, dirappend], True)
dv.new('timetags',[('Power', 'dBm')],[('TimeTag','Sec','Sec')] )
params['cycleTime'] = seq.parameters.cycleTime
dvParameters.saveParameters(dv, params)
def initialize():
global cycleTime
#pulser sequence
seq = PulsedScan(pulser)
pulser.new_sequence()
seq.setVariables(**params)
seq.defineSequence()
pulser.program_sequence()
pulser.switch_auto('axial', True) #high TTL corresponds to light ON
pulser.switch_auto('110DP', False) #high TTL corresponds to light OFF
pulser.switch_auto('866DP', False) #high TTL corresponds to light OFF
pulser.switch_manual('crystallization', False) #high TTL corresponds to light OFF
#set up data vault
dv.cd(['','Experiments', experimentName, dirappend], True)
dv.new('fluorDiff',[('Iterations', 'Arb')],[('Counts','Counts / Sec','Counts / Sec')] )
params['cycleTime'] = seq.parameters.cycleTime
params['plotLive'] = True
cycleTime = params['cycleTime']
dvParameters.saveParameters(dv, params)
def initialize():
global cycleTime
#pulser sequence
seq = PulsedScan(pulser)
pulser.new_sequence()
seq.setVariables(**params)
seq.defineSequence()
pulser.program_sequence()
pulser.switch_auto('axial', True) #high TTL corresponds to light ON
pulser.switch_auto('110DP', False) #high TTL corresponds to light OFF
pulser.switch_auto('866DP', False) #high TTL corresponds to light OFF
pulser.switch_manual('crystallization',
False) #high TTL corresponds to light OFF
#set up data vault
dv.cd(['', 'Experiments', experimentName, dirappend], True)
dv.new('fluorDiff', [('Iterations', 'Arb')],
[('Counts', 'Counts / Sec', 'Counts / Sec')])
params['cycleTime'] = seq.parameters.cycleTime
params['plotLive'] = True
cycleTime = params['cycleTime']
dvParameters.saveParameters(dv, params)
def finalize(self):
for name in ['axial', '110DP']:
self.pulser.switch_manual(name)
#save information to file
measureList = ['trapdrive','endcaps','compensation','dcoffsetonrf','cavity397','cavity866','multiplexer397','multiplexer866','axialDP', 'pulser']
measuredDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measuredDict)
dvParameters.saveParameters(self.dv, self.seqP.toDict())
dvParameters.saveParameters(self.dv, self.expP.toDict())
def sequence(self):
sP = self.seqP
xP = self.expP
#saving timetags
self.dv.cd(['','Experiments', self.experimentName, self.topdirectory, self.dirappend], True)
self.dv.new('timetags',[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
#do iterations
for iteration in range(xP.iterations):
print 'recording trace {0} out of {1}'.format(iteration+1, xP.iterations)
self.pulser.reset_timetags()
self.pulser.start_single()
self.pulser.wait_sequence_done()
self.pulser.stop_sequence()
timetags = self.pulser.get_timetags().asarray
iters = iteration * numpy.ones_like(timetags)
self.dv.add(numpy.vstack((iters,timetags)).transpose())
#add to binning of the entire sequence
self.Binner.add(timetags)
self.Splicer.add(timetags)
#auto crystallization
if xP.auto_crystal:
success = self.xtal.auto_crystallize()
if not success: break
#auto frequency correct
if xP.freq_correct:
if (xP.iterations % xP.freq_correct_interval == 0):
success = self.freqCorrect.auto_correct()
if not success: print 'Cant the drift, Boss'
#adding readout counts to data vault:
readout = self.Splicer.getList()
self.dv.cd(['','Experiments', self.experimentName, self.topdirectory, self.dirappend])
self.dv.new('readout',[('Iter', 'Number')], [('PMT counts','Counts/Sec','Counts/Sec')] )
self.dv.add(readout)
#adding binned fluorescence to data vault:
binX, binY = self.Binner.getBinned()
self.dv.cd(['','Experiments', self.experimentName, self.topdirectory, self.dirappend])
self.dv.new('binned',[('Time', 'sec')], [('PMT counts','Arb','Arb')] )
data = numpy.vstack((binX, binY)).transpose()
self.dv.add(data)
self.dv.add_parameter('Window',['Binned Fluorescence'])
self.dv.add_parameter('plotLive',True)
#adding histogram of counts to data vault
binX, binY = self.Splicer.getHistogram()
self.dv.cd(['','Experiments', self.experimentName, self.topdirectory, self.dirappend])
self.dv.new('histogram',[('Time', 'sec')], [('PMT counts','Arb','Arb')] )
data = numpy.vstack((binX, binY)).transpose()
self.dv.add(data)
self.dv.add_parameter('Window',['Histogram'])
self.dv.add_parameter('plotLive',True)
# gathering parameters and adding them to data vault
measureList = ['trapdrive','endcaps','compensation','dcoffsetonrf','cavity397','cavity866','multiplexer397','multiplexer866','axialDP', 'pulser']
measuredDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measuredDict)
dvParameters.saveParameters(self.dv, sP.toDict())
dvParameters.saveParameters(self.dv, xP.toDict())
def finalize(self):
#for name in ['axial', '110DP']:
for name in ['110DP']:
self.pulser.switch_manual(name)
#save information to file
measureList = ['trapdrive','endcaps','compensation','dcoffsetonrf','cavity397','cavity866','multiplexer397','multiplexer866','axialDP', 'pulser']
measuredDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measuredDict)
dvParameters.saveParameters(self.dv, self.seqP.toDict())
dvParameters.saveParameters(self.dv, self.expP.toDict())
def finalize(self):
#go back to initiali frequency
self.synth.frequency(self.initfreq)
#go back to inital logic
for name in ['axial', '110DP']:
self.pulser.switch_manual(name)
#save information to file
measureList = ['trapdrive','endcaps','compensation','dcoffsetonrf','cavity397','cavity866','multiplexer397','multiplexer866','axialDP', 'pulser']
measuredDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measuredDict)
dvParameters.saveParameters(self.dv, self.seqP.toDict())
dvParameters.saveParameters(self.dv, self.expP.toDict())
#show histogram
self.dp.makeHistPlot()
def sequence(self):
sP = self.seqP
xP = self.expP
now = datetime.datetime.now()
date = now.strftime("%Y%m%d")
ti = now.strftime('%H%M%S')
print ti
timetag_context = self.dv.context()
self.dv.cd(['',date, self.experimentName, ti, 'binned'], True)
self.dv.cd(['',date, self.experimentName, ti, 'timetags'], True, context = timetag_context)
#self.dv.new('binned_timetags',[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
self.dv.new('timetags',[('Time', 'sec')], [('Iteration', 'Arb','Arb')] , context = timetag_context )
timetags = []
numUpdates = xP.iterations
self.pulser.reset_timetags()
for n in range(numUpdates):
print n
for iteration in range(xP.iterations / numUpdates):
self.pulser.start_single()
self.pulser.wait_sequence_done()
self.pulser.stop_sequence()
timetags.extend(self.pulser.get_timetags().asarray)
self.pulser.reset_timetags()
timetag_raw = numpy.vstack( ( numpy.ones(len(timetags)),timetags ) ).transpose()
self.dv.add( timetag_raw, context=timetag_context )
self.Binner.add(timetags, xP.iterations)
self.dv.new('binned_timetags',[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
self.dv.add_parameter('Window',['Binned Fluorescence'])
self.dv.add_parameter('plotLive', True)
binX, binY = self.Binner.getBinned()
data = numpy.vstack((binX,binY)).transpose()
self.dv.add(data)
measureList = ['cavity397', 'cavity866', 'multiplexer397', 'multiplexer866', 'pulser']
measureDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measureDict)
dvParameters.saveParameters(self.dv, sP.toDict())
dvParameters.saveParameters(self.dv, xP.toDict())
def sequence(self):
sP = self.seqP
xP = self.expP
now = datetime.datetime.now()
date = now.strftime("%Y%m%d")
ti = now.strftime('%H%M%S')
print ti
timetag_context = self.dv.context()
self.dv.cd(['',date, self.experimentName, ti, 'binned'], True)
self.dv.cd(['',date, self.experimentName, ti, 'timetags'], True, context = timetag_context)
#self.dv.new('binned_timetags',[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
self.dv.new('timetags',[('Time', 'sec')], [('Iteration', 'Arb','Arb')] , context = timetag_context )
timetags = []
numUpdates = xP.iterations
self.pulser.reset_timetags()
for n in range(numUpdates):
print n
for iteration in range(xP.iterations / numUpdates):
self.pulser.start_single()
self.pulser.wait_sequence_done()
self.pulser.stop_sequence()
timetags.extend(self.pulser.get_timetags().asarray)
self.pulser.reset_timetags()
timetag_raw = numpy.vstack( ( numpy.ones(len(timetags)),timetags ) ).transpose()
self.dv.add( timetag_raw, context=timetag_context )
self.Binner.add(timetags, xP.iterations)
self.dv.new('binned_timetags',[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
self.dv.add_parameter('Window',['Binned Fluorescence'])
self.dv.add_parameter('plotLive', True)
binX, binY = self.Binner.getBinned()
data = numpy.vstack((binX,binY)).transpose()
self.dv.add(data)
measureList = ['cavity397', 'cavity866', 'multiplexer397', 'multiplexer866', 'pulser']
measureDict = dvParameters.measureParameters(self.cxn, self.cxnlab, measureList)
dvParameters.saveParameters(self.dv, measureDict)
dvParameters.saveParameters(self.dv, sP.toDict())
dvParameters.saveParameters(self.dv, xP.toDict())
#light logic
pulser.switch_auto('866DP', True) #high TTL means light ON
pulser.switch_auto('110DP', True)
pulser.switch_manual('crystallization', False)
#create directory
dv.cd(['', 'Experiments', experimentName, dirappend, 'timetags'], True)
for i in range(repeatitions):
pulser.reset_timetags()
pulser.start_single()
pulser.wait_sequence_done()
pulser.stop_sequence()
timetags = pulser.get_timetags().asarray
print 'got {0} timetags on iteration {1}'.format(timetags.size, i + 1)
#saving timetags
dv.new('timetags iter{0}'.format(i), [('Time', 'sec')],
[('PMT counts', 'Arb', 'Arb')])
dv.add_parameter('iteration', i)
ones = numpy.ones_like(timetags)
dv.add(numpy.vstack((timetags, ones)).transpose())
dvParameters.saveParameters(dv, params)
#data processing on the fuly
dp.addTimetags(timetags)
#revert the logic
pulser.switch_auto('866DP', False) #high TTL means light Off
pulser.switch_manual('110DP', True)
#complete
print 'SAVED {}'.format(dirappend)
dp.normalize(repeatitions)
dp.makePlot()
print 'DONE'
pulser.program_sequence()
#light logic
pulser.switch_auto('866DP', True) #high TTL means light ON
pulser.switch_auto('110DP', True)
pulser.switch_manual('crystallization', False)
#create directory
dv.cd(['','Experiments', experimentName, dirappend, 'timetags'],True )
for i in range(repeatitions):
pulser.reset_timetags()
pulser.start_single()
pulser.wait_sequence_done()
pulser.stop_sequence()
timetags = pulser.get_timetags().asarray
print 'got {0} timetags on iteration {1}'.format(timetags.size, i + 1)
#saving timetags
dv.new('timetags iter{0}'.format(i),[('Time', 'sec')],[('PMT counts','Arb','Arb')] )
dv.add_parameter('iteration',i)
ones = numpy.ones_like(timetags)
dv.add(numpy.vstack((timetags,ones)).transpose())
dvParameters.saveParameters(dv, params)
#data processing on the fuly
dp.addTimetags(timetags)
#revert the logic
pulser.switch_auto('866DP', False) #high TTL means light Off
pulser.switch_manual('110DP', True)
#complete
print 'SAVED {}'.format(dirappend)
dp.normalize(repeatitions)
dp.makePlot()
print 'DONE'