Ejemplos de compare_search_obj en Python

Ejemplo n.º 1

Archivo: test_SearchIO_write.py Proyecto: AllanDaemon/biopython

 def read_write_and_compare(self, source_file, source_format, out_file,
         out_format, **kwargs):
     """Compares read QueryResults after it has been written to a file."""
     source_qresult = SearchIO.read(source_file, source_format, **kwargs)
     SearchIO.write(source_qresult, out_file, out_format, **kwargs)
     out_qresult = SearchIO.read(out_file, out_format, **kwargs)
     self.assertTrue(compare_search_obj(source_qresult, out_qresult))

Ejemplo n.º 2

Archivo: test_SearchIO_write.py Proyecto: igorrcosta/biopython

 def read_write_and_compare(self, source_file, source_format, out_file,
                            out_format, **kwargs):
     """Compares read QueryResults after it has been written to a file."""
     source_qresult = SearchIO.read(source_file, source_format, **kwargs)
     SearchIO.write(source_qresult, out_file, out_format, **kwargs)
     out_qresult = SearchIO.read(out_file, out_format, **kwargs)
     self.assertTrue(compare_search_obj(source_qresult, out_qresult))

Ejemplo n.º 3

Archivo: test_SearchIO_write.py Proyecto: janusz005/biopython

 def parse_write_and_compare(self, source_file, source_format, out_file, out_format, **kwargs):
     """Compares parsed QueryResults after they have been written to a file."""
     source_qresults = list(SearchIO.parse(source_file, source_format, **kwargs))
     SearchIO.write(source_qresults, out_file, out_format, **kwargs)
     out_qresults = list(SearchIO.parse(out_file, out_format, **kwargs))
     for source, out in zip(source_qresults, out_qresults):
         self.assertTrue(compare_search_obj(source, out))

Ejemplo n.º 4

Archivo: test_SearchIO_write.py Proyecto: igorrcosta/biopython

 def parse_write_and_compare(self, source_file, source_format, out_file,
                             out_format, **kwargs):
     """Compares parsed QueryResults after they have been written to a file."""
     source_qresults = list(
         SearchIO.parse(source_file, source_format, **kwargs))
     SearchIO.write(source_qresults, out_file, out_format, **kwargs)
     out_qresults = list(SearchIO.parse(out_file, out_format, **kwargs))
     for source, out in zip(source_qresults, out_qresults):
         self.assertTrue(compare_search_obj(source, out))