specimens = [specimen for specimen in specimens if specimen[0] not in specimen_ids]
for specimen_id, filename in specimens:
with open('computed_wing_lengths.csv', 'a') as csvfile:
writer = csv.writer(csvfile)
start = timeit.default_timer()
image = cv2.imread(filename)
height, width = image.shape[:2]
segmented_image, segmented_mask = segmentation.segment_butterfly(image,
saliency_threshold=96,
approximate=False)
# cv2.imwrite('color.png', segmented_image)
# cv2.imwrite('mask.png', segmented_mask * 255)
# np.save('color', segmented_image)
# np.save('mask', segmented_mask)
# segmented_image = np.load('color.npy')
# segmented_mask = np.load('mask.npy')
wing_mask, wing_paths = segmentation.segment_wing(segmented_mask)
left_wing_length, right_wing_length = wing_lengths(wing_mask, wing_paths)
stop = timeit.default_timer()
print('{}: Left wing is {:.2f}px, right wing is {:.2f}px [{:.2f}s]'.format(specimen_id, left_wing_length, right_wing_length, stop - start))
writer.writerow([specimen_id, right_wing_length, left_wing_length])
# cv2.imwrite('wings.png', wing_mask)
reader = csv.reader(csvfile)
specimen_ids = [row[0] for row in reader]
specimens = [
specimen for specimen in specimens if specimen[0] not in specimen_ids
]
for specimen_id, filename in specimens:
with open('computed_wing_lengths.csv', 'a') as csvfile:
writer = csv.writer(csvfile)
start = timeit.default_timer()
image = io_functions.read_image(filename)
height, width = image.shape[:2]
segmented_image, segmented_mask = segmentation.segment_butterfly(
image, saliency_threshold=96, approximate=False)
wing_mask, wing_paths, centre_of_mass = segmentation.segment_wing(
segmented_mask)
left_wing_length = wing_length(wing_mask[:, centre_of_mass[1]::-1],
wing_paths[0][:, centre_of_mass[1]::-1])
right_wing_length = wing_length(wing_mask[:, centre_of_mass[1]:],
wing_paths[1][:, centre_of_mass[1]:])
stop = timeit.default_timer()
print('{}: Left wing is {:.2f}px, right wing is {:.2f}px [{:.2f}s]'.
format(specimen_id, left_wing_length, right_wing_length,
stop - start))
writer.writerow([specimen_id, right_wing_length, left_wing_length])
with open('computed_wing_lengths.csv', 'wb') as csvfile:
writer = csv.writer(csvfile)
writer.writerow(['Specimen', 'Right', 'Left'])
with open('computed_wing_lengths.csv', 'rU') as csvfile:
reader = csv.reader(csvfile)
specimen_ids = [row[0] for row in reader]
specimens = [specimen for specimen in specimens if specimen[0] not in specimen_ids]
for specimen_id, filename in specimens:
with open('computed_wing_lengths.csv', 'a') as csvfile:
writer = csv.writer(csvfile)
start = timeit.default_timer()
image = io_functions.read_image(filename)
height, width = image.shape[:2]
segmented_image, segmented_mask = segmentation.segment_butterfly(image,
saliency_threshold=96,
approximate=False)
wing_mask, wing_paths, centre_of_mass = segmentation.segment_wing(segmented_mask)
left_wing_length = wing_length(wing_mask[:, centre_of_mass[1]::-1], wing_paths[0][:, centre_of_mass[1]::-1])
right_wing_length = wing_length(wing_mask[:, centre_of_mass[1]:], wing_paths[1][:, centre_of_mass[1]:])
stop = timeit.default_timer()
print('{}: Left wing is {:.2f}px, right wing is {:.2f}px [{:.2f}s]'.format(specimen_id, left_wing_length, right_wing_length, stop - start))
writer.writerow([specimen_id, right_wing_length, left_wing_length])
