def _get_project_child_entities(project, user):
families_by_guid = _retrieve_families(project.guid, user)
individuals_by_guid = _retrieve_individuals(project.guid, user)
for individual_guid, individual in individuals_by_guid.items():
families_by_guid[individual['familyGuid']]['individualGuids'].add(individual_guid)
samples_by_guid = _retrieve_samples(project.guid, individuals_by_guid)
analysis_groups_by_guid = _retrieve_analysis_groups(project)
locus_lists = get_sorted_project_locus_lists(project, user)
locus_lists_by_guid = {locus_list['locusListGuid']: locus_list for locus_list in locus_lists}
return families_by_guid, individuals_by_guid, samples_by_guid, analysis_groups_by_guid, locus_lists_by_guid
def delete_project_locus_lists(request, project_guid):
project = get_project_and_check_permissions(project_guid, request.user,
CAN_EDIT)
request_json = json.loads(request.body)
locus_lists = LocusList.objects.filter(
guid__in=request_json['locusListGuids'])
for locus_list in locus_lists:
remove_perm(user_or_group=project.can_view_group,
perm=CAN_VIEW,
obj=locus_list)
return create_json_response({
'locusListGuids': [
locus_list['locusListGuid']
for locus_list in get_sorted_project_locus_lists(
project, request.user)
],
})
def _get_project_child_entities(project, user):
families_by_guid = _retrieve_families(project.guid, user)
individuals_by_guid, individual_models = _retrieve_individuals(project.guid, user)
for individual_guid, individual in individuals_by_guid.items():
families_by_guid[individual['familyGuid']]['individualGuids'].add(individual_guid)
samples_by_guid = _retrieve_samples(project.guid, individuals_by_guid, individual_models)
mme_submissions_by_guid = _retrieve_mme_submissions(individuals_by_guid, individual_models)
analysis_groups_by_guid = _retrieve_analysis_groups(project)
locus_lists = get_sorted_project_locus_lists(project, user)
locus_lists_by_guid = {locus_list['locusListGuid']: locus_list for locus_list in locus_lists}
return {
'familiesByGuid': families_by_guid,
'individualsByGuid': individuals_by_guid,
'samplesByGuid': samples_by_guid,
'locusListsByGuid': locus_lists_by_guid,
'analysisGroupsByGuid': analysis_groups_by_guid,
'mmeSubmissionsByGuid': mme_submissions_by_guid,
}