def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test_add_acls.txt"
BatonDataObjectAPI.remove_all_acls(self.fpath)
self.acl = ACL(user='******', zone='humgen', permission='READ')
BatonDataObjectAPI.add_or_replace_acl(self.fpath, self.acl)
existing_acls = BatonDataObjectAPI.get_acls(self.fpath)
self.assertEqual(len(existing_acls), 1)
def test_add_or_replace_a_list_of_acls(self):
self.acls = [
ACL(user='******', zone='humgen', permission='READ'),
ACL(user='******', zone='humgen', permission='READ')
]
BatonDataObjectAPI.add_or_replace_a_list_of_acls(self.fpath, self.acls)
self.acls_set = BatonDataObjectAPI.get_acls(self.fpath)
self.assertEqual(len(self.acls_set), 2)
def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test_add_acls.txt"
self.acls = [
ACL(user='******', zone='humgen', permission='READ'),
ACL(user='******', zone='humgen', permission='READ')
]
BatonDataObjectAPI.add_or_replace_a_list_of_acls(self.fpath, self.acls)
self.acls_set = BatonDataObjectAPI.get_acls(self.fpath)
self.assertNotEqual(len(self.acls_set), 0)
def test_get_or_replace_acls_when_adding_a_new_acl(self):
added_acl = ACL(user='******', zone='humgen', permission='OWN')
BatonDataObjectAPI.add_or_replace_acl(self.fpath, added_acl)
acls_set = BatonDataObjectAPI.get_acls(self.fpath)
found = False
for acl in acls_set:
if acl == added_acl:
found = True
self.assertTrue(found)
def test_get_acls_data_object(self):
result = BatonDataObjectAPI._get_acls("/humgen/projects/serapis_staging/test-baton/test_acls.txt")
expected = {ACL(user='******', zone='humgen', permission='READ'),
ACL(user='******', zone='Sanger1', permission='READ'),
ACL(user='******', zone='humgen', permission='OWN'),
ACL(user='******', zone='Sanger1', permission='OWN'),
ACL(user='******', zone='humgen', permission='OWN'),
ACL(user='******', zone='humgen', permission='OWN')
}
self.assertSetEqual(result, expected)
def test_get_or_replace_acls_when_replacing_an_acl(self):
added_acl = ACL(user='******', zone='humgen', permission='OWN')
BatonDataObjectAPI.add_or_replace_acl(self.fpath, added_acl)
acls_set = BatonDataObjectAPI.get_acls(self.fpath)
self.assertSetEqual(acls_set, {added_acl})
replacement_acl = ACL(user='******', zone='humgen', permission='READ')
BatonDataObjectAPI.add_or_replace_acl(self.fpath, replacement_acl)
acls_set = BatonDataObjectAPI.get_acls(self.fpath)
self.assertSetEqual(acls_set, {replacement_acl})
def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test_add_acls.txt"
BatonDataObjectAPI.remove_all_acls(self.fpath)
def test_remove_all_acls(self):
BatonDataObjectAPI.remove_all_acls(self.fpath)
acls_set = BatonDataObjectAPI.get_acls(self.fpath)
self.assertEqual(set(), acls_set)
def test_update_metadata(self):
BatonDataObjectAPI.update_metadata(self.fpath, 'uniq_key', {'second_value'})
updated_meta = BatonDataObjectAPI.get_all_metadata(self.fpath)
values = updated_meta.get_avu('uniq_key')
self.assertEqual(values, {'second_value'})
def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test_metadata_add_rm.txt"
BatonDataObjectAPI.add_metadata(self.fpath, {'uniq_key': {'first_value'}})
def test_remove_metadata(self):
BatonDataObjectAPI.remove_metadata(self.fpath, self.meta_dict)
crt_meta = BatonDataObjectAPI.get_all_metadata(self.fpath)
self.assertEqual(crt_meta, self.previous_meta)
def setUp(self):
self.fpath = "/humgen/projects/serapis_staging/test-baton/test_metadata_add_rm.txt"
self.meta_dict = {'sample': {'sample2'}, 'sample_id': {'-1'}}
self.previous_meta = BatonDataObjectAPI.get_all_metadata(self.fpath)
BatonDataObjectAPI.add_metadata(self.fpath, self.meta_dict)
def tearDown(self):
BatonDataObjectAPI.remove_metadata(self.fpath, self.meta_dict)
def test_add_metadata(self):
BatonDataObjectAPI.add_metadata(self.fpath, self.meta_dict)
metadata = BatonDataObjectAPI.get_all_metadata(self.fpath).to_dict()
self.assertDictEqual(self.meta_dict, metadata)
def test_remove_acls_for_a_list_of_users(self):
BatonDataObjectAPI.remove_acls_for_a_list_of_users(self.fpath, [(self.acl.user, self.acl.zone)])
existing_acls = BatonDataObjectAPI.get_acls(self.fpath)
self.assertEqual(0, len(existing_acls))
def tearDown(self):
BatonDataObjectAPI.remove_all_acls(self.fpath)
def tearDown(self):
BatonDataObjectAPI.remove_metadata(self.fpath, {'uniq_key': {'second_value'}})