def test_transform(self):
ri = ReversibleImputer()
X = np.array([1, 1, 100, 0, 2], dtype=np.float64)[:, np.newaxis]
X[2] = np.nan
Xt = ri.fit_transform(X)
expected = np.array([1, 1, 1, 0, 2], dtype=np.float64)[:, np.newaxis]
assert np.allclose(expected, Xt)
def make_pipeline(model):
steps = [('features', FeatureUnion([
('seasonal_features', SeasonalTransformer(seasonal_period=1)),
('ar_features', AutoregressiveTransformer(num_lags=1))
]))]
#steps = list()
steps.append(('post_feature_imputer', ReversibleImputer()))
# standardization
steps.append(('standardize', StandardScaler()))
# normalization
steps.append(('normalize', MinMaxScaler()))
# the model
steps.append(('model', model))
# create pipeline
#pipeline = ForecasterPipeline(steps=steps)
pipeline = ForecasterPipeline([
('pre_differencer', DifferenceTransformer(period=1)),
('pre_diff_imputer', ReversibleImputer()),
('pre_day_differencer', DifferenceTransformer(period=1)),
('pre_day_diff_imputer', ReversibleImputer()),
('pre_scaler', StandardScaler()),
('features', FeatureUnion([
('ar_features', AutoregressiveTransformer(num_lags=1)),
('seasonal_features', SeasonalTransformer(seasonal_period=1)),
])),
('post_feature_imputer', ReversibleImputer()),
('post_feature_scaler', StandardScaler()),
('model', LinearRegression(fit_intercept=False))])
return pipeline
def test_multiouput_prediction(self):
# TODO: Make this a real test
steps = [('pre_horizon', HorizonTransformer(horizon=4)),
('pre_imputer', ReversibleImputer(y_only=True)),
('features',
FeatureUnion([('ar_transformer',
AutoregressiveTransformer(num_lags=3))])),
('post_lag_imputer', ReversibleImputer()),
('regressor', LinearRegression())]
pipeline = ForecasterPipeline(steps)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
pipeline.fit(y[:, np.newaxis], y)
pipeline.predict(y[:, np.newaxis], to_scale=True, refit=True)
def get_pipeline(self):
regressor = None
if self.learning_method == "linear":
regressor = MultiOutputRegressor(LinearRegression(fit_intercept=self.fit_intercept),
n_jobs=6)
elif self.learning_method == "booster":
regressor = MultiOutputRegressor(XGBRegressor(n_jobs=12,
n_estimators=self.no_estimators))
elif self.learning_method == "deep":
regressor = NeuralNetRegressor(
module=TemporalConvNet,
module__num_inputs=1,
module__num_channels=[2] * self.no_channels,
module__output_sz=self.horizon,
module__kernel_size=5,
module__dropout=0.0,
max_epochs=60,
batch_size=256,
lr=2e-3,
optimizer=torch.optim.Adam,
device='cpu',
iterator_train__shuffle=True,
callbacks=[GradientNormClipping(gradient_clip_value=1,
gradient_clip_norm_type=2)],
train_split=None,
)
return ForecasterPipeline([
# Convert the `y` target into a horizon
('pre_horizon', HorizonTransformer(horizon=self.horizon)),
('pre_reversible_imputer', ReversibleImputer(y_only=True)),
('features', FeatureUnion([
# Generate a week's worth of autoregressive features
('ar_features', AutoregressiveTransformer(
num_lags=int(self.horizon * self.num_lags), pred_stride=self.pred_stride)),
])),
('post_feature_imputer', ReversibleImputer()),
('regressor', regressor)
])
def test_multiouput_forecast(self):
# TODO: Make this a real test
steps = [
("pre_horizon", HorizonTransformer(horizon=4)),
("pre_imputer", ReversibleImputer(y_only=True)),
(
"features",
FeatureUnion([("ar_transformer",
AutoregressiveTransformer(num_lags=3))]),
),
("post_lag_imputer", ReversibleImputer()),
("regressor", LinearRegression()),
]
pipeline = ForecasterPipeline(steps)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, 0.1, size=100)
pipeline.fit(y[:, np.newaxis], y)
pipeline.forecast(y[:, np.newaxis], 20)
class TestPipelines:
steps = [
('pre_differencer', DifferenceTransformer(period=1)),
('pre_imputer_1', ReversibleImputer()),
('features',
FeatureUnion([
('ar_transformer', AutoregressiveTransformer(num_lags=3)),
('seasonal_transformer', SeasonalTransformer(seasonal_period=4))
])),
('post_lag_imputer_2', ReversibleImputer()),
]
dt = DifferenceTransformer(period=1)
ri1 = ReversibleImputer()
fe = FeatureUnion([
('ar_transformer', AutoregressiveTransformer(num_lags=3)),
('seasonal_transformer', SeasonalTransformer(seasonal_period=4))
])
ri2 = ReversibleImputer()
def test_predict(self):
# Let's just see if it works
# TODO: Make this a real test
np.random.seed(SEED)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
# Ignore the DifferenceTransformer. It's actually bad.
steps = list(self.steps[1:])
steps.append(('regressor', LinearRegression(fit_intercept=False)))
pipeline = ForecasterPipeline(steps)
pipeline.fit(y[:, np.newaxis], y)
y_pred = pipeline.predict(y[:, np.newaxis], to_scale=True, refit=True)
assert np.mean((y_pred - y.squeeze())**2) < 0.05
def test_forecast(self):
# Let's just see if it works
# TODO: Make this a real test
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
steps = list(self.steps)
steps.append(('regressor', LinearRegression(fit_intercept=False)))
pipeline = ForecasterPipeline(steps)
pipeline.fit(y[:, np.newaxis], y)
pipeline.forecast(y[:, np.newaxis], 20)
def test_classifier(self):
# Let's just see if it works
# TODO: Make this a real test
np.random.seed(SEED)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
steps = list(self.steps)
steps.append(('classifier',
LogisticRegression(solver='lbfgs', fit_intercept=False)))
pipeline = ClassifierPipeline(steps)
y_true = y > 0
pipeline.fit(y[:, np.newaxis], y_true)
y_pred = pipeline.predict(y[:, np.newaxis])
assert (y_pred == y_true).mean() > 0.75
def test_multiouput_prediction(self):
# TODO: Make this a real test
steps = [('pre_horizon', HorizonTransformer(horizon=4)),
('pre_imputer', ReversibleImputer(y_only=True)),
('features',
FeatureUnion([('ar_transformer',
AutoregressiveTransformer(num_lags=3))])),
('post_lag_imputer', ReversibleImputer()),
('regressor', LinearRegression())]
pipeline = ForecasterPipeline(steps)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
pipeline.fit(y[:, np.newaxis], y)
pipeline.predict(y[:, np.newaxis], to_scale=True, refit=True)
def test_multiouput_forecast(self):
# TODO: Make this a real test
steps = [('pre_horizon', HorizonTransformer(horizon=4)),
('pre_imputer', ReversibleImputer(y_only=True)),
('features',
FeatureUnion([('ar_transformer',
AutoregressiveTransformer(num_lags=3))])),
('post_lag_imputer', ReversibleImputer()),
('regressor', LinearRegression())]
pipeline = ForecasterPipeline(steps)
l = np.linspace(0, 1, 100)
y = np.sin(2 * np.pi * 5 * l) + np.random.normal(0, .1, size=100)
pipeline.fit(y[:, np.newaxis], y)
pipeline.forecast(y[:, np.newaxis], 20)
def test_inverse_transform(self):
ri = ReversibleImputer()
X = np.random.random(20)[:, np.newaxis]
X[[0, 5, 13], :] = np.nan
X_inv = ri.inverse_transform(ri.fit_transform(X))
assert np.allclose(X, X_inv, equal_nan=True)