def toXML(self, doc) :
n = c3D.toXML(self, doc)
n.appendChild(smds.createXMLvalue(doc, "flow", "%g"%self.flow))
n.appendChild(smds.createXMLvalue(doc, "flowLength",
"%g"%self.flowLength))
n.appendChild(smds.createXMLvalue(doc, "drainLength",
"%g"%self.drainLength))
return n
def createXMLchannel(self, doc) :
n = doc.createElement("Channel")
n.appendChild(smds.createXMLvalue(doc, "capHeight", "%g"%self.capHeight))
n.appendChild(smds.createXMLvalue(doc, "capWidth", "%g"%self.capWidth))
n.appendChild(smds.createXMLvalue(doc, "channelRadius",
"%g"%self.channelRadius))
n.appendChild(smds.createXMLvalue(doc, "hitPoint", "%g"%self.hitPoint))
return n
def toXML(self, doc) :
"Returns these Results as a node for insertion into xml.dom.Document doc."
n = doc.createElement("Results")
n.appendChild(smds.createXMLvalue(doc, "Length", str(self.length)))
n.appendChild(smds.createXMLvalue(doc, "Counts",
', '.join([str(x) for x in self.counts]) ))
n.appendChild(smds.createXMLvalue(doc, "Avg_I", str(self.avg_I)))
return n
def createXMLchannel(self, doc) :
n = doc.createElement("Channel")
n.appendChild(smds.createXMLvalue(doc, "PotProfile", self.pot.name))
n.appendChild(smds.createXMLvalue(doc, "potA",
"%g" % self.potA))
n.appendChild(smds.createXMLvalue(doc, "potB",
"%g" % self.potB))
return n
def createXMLchannel(self, doc) :
n = Base_AHL_sdx.createXMLchannel(self, doc)
n.appendChild(smds.createXMLvalue(doc, "PotProfile", self.pot.name))
n.appendChild(smds.createXMLvalue(doc, "potA",
"%g" % self.potA))
n.appendChild(smds.createXMLvalue(doc, "potB",
"%g" % self.potB))
return n
def createXMLsim(self, doc) :
n = doc.createElement("Sim")
n.setAttribute("dT", str(self.dT))
n.setAttribute("binWidth", str(self.binWidth))
n.setAttribute("num", str(self.num))
n.appendChild(smds.createXMLvalue(doc, "timeToMiss", "%g"%self.timeToMiss))
n.appendChild(smds.createXMLvalue(doc, "D", "%g" % self.D))
n.appendChild(smds.createXMLvalue(doc, "mobility", "%g" % self.mobility))
return n
def toXML(self, doc) : "Returns these Results as a node for insertion into xml.dom.Document doc." n.appendChild(smds.createXMLvalue(doc, "Hit Tape", '\n'.join(["%g,%g,%g,%g" % (self.hitTape_t[i],self.hitTape_x[i],self.hitTape_y[i],self.hitTape_z[i]) for i in range(len(self.hitTape_x))]) )) n.appendChild(smds.createXMLvalue(doc, "Miss Tape", '\n'.join(["%g,%g,%g,%g" % (self.missTape_t[i],self.missTape_x[i],self.missTape_y[i],self.missTape_z[i]) for i in range(len(self.missTape_x))]) )) return n
def toXML(self, doc) :
"Returns these Results as a node for insertion into xml.dom.Document doc."
n = doc.createElement("Results")
n.appendChild(smds.createXMLvalue(doc, "Num", str(self.num)))
n.appendChild(smds.createXMLvalue(doc, "Hits", str(self.hits)))
n.appendChild(smds.createXMLvalue(doc, "Misses", str(self.misses)))
n.appendChild(smds.createXMLvalue(doc, "TimeToHitDist",
'\n'.join(["%g,%d" % (self.hitTimeDist_t[i],
self.hitTimeDist_count[i])
for i in range(len(self.hitTimeDist_t))]) ))
return n
def createXMLsim(self, doc) :
n = doc.createElement("Sim")
n.setAttribute("macro_dT", str(self.macro_dT))
n.setAttribute("micro_dT", str(self.micro_dT))
n.setAttribute("binWidth", str(self.binWidth))
n.setAttribute("dur", str(self.dur))
n.setAttribute("numMolecs", str(self.numMolecs))
n.appendChild(smds.createXMLvalue(doc, "concentration",
"%g" % self.concentration))
n.appendChild(smds.createXMLvalue(doc, "D", "%g" % self.D))
n.appendChild(smds.createXMLvalue(doc, "mobility", "%g" % self.mobility))
return n
def toXML(self, doc, n) :
n.appendChild(smds.createXMLvalue(doc, "video_framerate",
"%g"%self.video_framerate))
n.appendChild(smds.createXMLvalue(doc, "video_Nx",
"%d"%self.video_Nx))
n.appendChild(smds.createXMLvalue(doc, "video_Ny",
"%d"%self.video_Ny))
n.appendChild(smds.createXMLvalue(doc, "video_sizeX",
"%d"%self.video_sizeX))
n.appendChild(smds.createXMLvalue(doc, "video_sizeY",
"%d"%self.video_sizeY))
return n
def createXMLchannel(self, doc) :
n = doc.createElement("Channel")
n.appendChild(smds.createXMLvalue(doc, "capHeight", "%g"%self.capHeight))
n.appendChild(smds.createXMLvalue(doc, "capWidth", "%g"%self.capWidth))
n.appendChild(smds.createXMLvalue(doc, "channelRadius",
"%g"%self.channelRadius))
n.appendChild(smds.createXMLvalue(doc, "hitPoint",
"%g"%self.hitPoint))
n.appendChild(smds.createXMLvalue(doc, "vestibuleHeight",
"%g" % self.vestibuleHeight))
n.appendChild(smds.createXMLvalue(doc, "vestibulePos",
"%g" % self.vestibulePos))
n.appendChild(smds.createXMLvalue(doc, "vestibuleRadius",
"%g" % self.vestibuleRadius))
n.appendChild(smds.createXMLvalue(doc, "initHeight",
"%g" % self.initHeight))
n.appendChild(smds.createXMLvalue(doc, "offset",
"%g" % self.offset))
n.appendChild(smds.createXMLvalue(doc, "potExtent",
"%g" % self.potExtent))
n.appendChild(smds.createXMLvalue(doc, "potA",
"%g" % self.potA))
n.appendChild(smds.createXMLvalue(doc, "potB",
"%g" % self.potB))
n.appendChild(smds.createXMLvalue(doc, "potC",
"%g" % self.potC))
return n
def createXMLchannel(self, doc):
n = cAHL_elef.createXMLchannel(self, doc)
n.appendChild(smds.createXMLvalue(doc, "chargeRadius",
"%g" % self.chargeRadius))
n.appendChild(smds.createXMLvalue(doc, "charge", "%g" % self.charge))
return n
def createXMLsim(self, doc):
n = cAHL_sphdxeo.createXMLsim(self, doc)
n.appendChild(smds.createXMLvalue(doc, "stepsPerTape", "%g" % self.stepsPerTape))
return n
def createXMLsim(self, doc) : n = cAHL_sdxeo.createXMLsim(self, doc) n.appendChild(smds.createXMLvalue(doc, "particleRadius", "%g" % self.particleRadius)) return n
def createXMLsim(self, doc) : n = Base_AHL_sdx.createXMLsim(self, doc) n.appendChild(smds.createXMLvalue(doc, "conductance", "%g" % self.conductance)) n.appendChild(smds.createXMLvalue(doc, "ionicSelectivity", "%g" % self.ionicSelectivity)) n.appendChild(smds.createXMLvalue(doc, "Nw", "%g" % self.Nw)) return n
def createXMLsim(self, doc) : n = Base_AHL_sdx.createXMLsim(self, doc) n.appendChild(smds.createXMLvalue(doc, "stepsPerTape", "%g" % self.stepsPerTape)) n.appendChild(smds.createXMLvalue(doc, "tapeSelect", "%g" % self.tapeSelect)) return n
def createXMLchannel(self, doc) :
n = Base_AHL_sdx.createXMLchannel(self, doc)
n.appendChild(smds.createXMLvalue(doc, "particleRadius",
"%g"%self.channelRadius))
return n
def toXML(self, doc, n) : "Apends these Results to node n for insertion into xml.dom.Document doc." n.appendChild(smds.createXMLvalue(doc, "vesicleCounts", ', '.join([ str(x) for x in self.vesicleCounts ]) )) n.appendChild(smds.createXMLvalue(doc, "freeCounts", ', '.join([ str(x) for x in self.freeCounts ]) ))
def toXML(self, doc) :
"Returns these Results as a node for insertion into xml.dom.Document doc."
n = doc.createElement("Results")
n.appendChild(smds.createXMLvalue(doc, "Length", str(self.length)))
n.appendChild(smds.createXMLvalue(doc, "Hits", str(self.hits)))
return n
def createXMLchannel(self, doc) :
n = doc.createElement("Channel")
n.appendChild(smds.createXMLvalue(doc, "particleRadius",
"%g" % self.particleRadius))
return n
def toXML(self, doc, n) : "Appends these Results to node n for insertion into xml.dom.Document doc." n.appendChild(smds.createXMLvalue(doc, "Bleached", ', '.join([ str(x) for x in self.bleached ]) ))
def createXMLsim(self, doc) :
n = doc.createElement("Sim")
n.appendChild(smds.createXMLvalue(doc, "conductance", "%g" % self.conductance))
n.appendChild(smds.createXMLvalue(doc, "ionicSelectivity", "%g" % self.ionicSelectivity))
n.appendChild(smds.createXMLvalue(doc, "Nw", "%g" % self.Nw))
return n
def toXML(self, doc, n) : "Apends these Results to node n for insertion into xml.dom.Document doc." n.appendChild(smds.createXMLvalue(doc, "video", dumps(self.video), True ))
def createXMLsim(self, doc) :
n = doc.createElement("Sim")
n.appendChild(smds.createXMLvalue(doc, "stepsPerTape", "%g" % self.stepsPerTape))
n.appendChild(smds.createXMLvalue(doc, "tapeSelect", "%g" % self.tapeSelect))
return n