Ejemplo n.º 1
0
def plot_testing_growth(
        dataset, ax, mask=None, days=1,
        show_info=True, text_left=None, text_right=None,
        show_title=True, text_title=None,
        show_bar=True,
        show_numbers=True, show_total_numbers=True,
        show_legend=True,
        show_confirmed=False, show_confirmed_numbers=True):

    slice_data = (
        slice(None, None, days) if mask is None else slice(*mask, days)
    )

    data = dataset[slice_data]
    date_index = data.index
    date_ticks = date_index.strftime('%d\n%b').to_list()
    rows, _ = data.shape

    total_tests = data['jumlah_periksa'].values
    total_positive = data['konfirmasi'].values
    total_negative = data['negatif'].values
    total_checks = data['proses_periksa'].values

    x_pos = np.arange(0, rows*2, 2)
    x_pos_diff = x_pos[:-1] + 1

    # DIFF
    diff_tests = np.diff(total_tests)
    diff_positive = np.diff(total_positive)
    diff_negative = np.diff(total_negative)
    diff_checks = np.diff(total_checks)

    if show_bar:

        # NEGATIVE
        ax.bar(
            x_pos_diff, _remove_negative(diff_negative),
            color='#3de3d2',  alpha=0.5,  # edgecolor='black', alpha=0.7,
            bottom=_remove_negative(diff_checks),
            label='Negatif COVID-19'
        )

        # CHECKS
        ax.bar(
            x_pos_diff, _remove_negative(diff_checks),
            bottom=0, alpha=0.5,
            color='yellow',  # edgecolor='black',
            label='Proses Pemeriksaan'
        )

        # POSITIVE
        ax.bar(
            x_pos_diff, _remove_negative(diff_positive)*-1,
            bottom=0, alpha=0.5,
            color='red',  # edgecolor='black',
            label='Kasus Konfirmasi Positif COVID-19'
        )

    # ANNOTATION
    if show_numbers:
        for i, val in enumerate(diff_tests):

            # NEGATIVE
            text = (
                f'{diff_negative[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 50), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='white', family='monospace',
                bbox=dict(
                    facecolor='#3de3d2', alpha=1, boxstyle='square'
                )
            )

            # CHECKS
            text = (
                f'{diff_checks[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 30), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='black', family='monospace',
                bbox=dict(
                    facecolor='yellow', alpha=1, boxstyle='square'
                )
            )

            # POSITIVE CASE
            text = (
                f'{diff_positive[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 10), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='white', family='monospace',
                bbox=dict(
                    facecolor='red', alpha=1, boxstyle='square'
                )
            )

            if show_total_numbers:
                total = np.sum(
                    (diff_positive[i], diff_negative[i], diff_checks[i]))
                text = (
                    f'{total:+d}'
                )

                ax.annotate(
                    text, (x_pos_diff[i], 0),
                    xytext=(0, 70), textcoords='offset points',
                    ha='center', va='bottom', size=12, fontweight='bold',
                    color='black',
                )

    if show_confirmed:
        ax2 = ax.twinx()
        ax2.plot(
            x_pos, total_tests,
            color='gray', linestyle='--',
            marker='o', markerfacecolor='gray',
            alpha=0.2
        )
        ax2.bar(
            x_pos, total_tests,
            alpha=0.3, color='grey',
            label='Jumlah Spesimen'
        )
        ax2.set_ylabel('Jumlah Spesimen', fontsize=14)

        if show_confirmed_numbers:
            for i, val in enumerate(total_tests):
                text = (
                    f'{val:d}'
                )

                ax2.annotate(
                    text, (x_pos[i], val),
                    xytext=(0, 10), textcoords='offset points',
                    ha='center', va='top', size=10, fontweight='bold',
                    color='black', alpha=0.3
                )

        so.align_yaxis_np((ax, ax2))
        ax2.set_yticklabels([f'{abs(x):.0f}' for x in ax2.get_yticks()])

    # INFO

    if show_info:
        text_right = (
            'Data: Situasi Terkini Perkembangan COVID-19 ' +
            '(infeksiemerging.kemkes.go.id)'
            if text_right is None else
            text_right
        )
        ax.text(
            1, -0.1, text_right,
            horizontalalignment='right',
            verticalalignment='top', style='normal', family='monospace',
            transform=ax.transAxes
        )

        text_left = (
            '' if text_left is None else
            text_left
        )

        ax.text(
            0, -0.1, text_left,
            horizontalalignment='left',
            verticalalignment='top', style='normal', family='serif',
            transform=ax.transAxes
        )

    # LEGEND

    ax.set_xticks(x_pos)
    ax.set_xticklabels(date_ticks, rotation=0)
    ax.set_yticklabels([f'{abs(x):.0f}' for x in ax.get_yticks()])

    if show_title:
        text_title = (
            'PERKEMBANGAN JUMLAH SPESIMEN COVID-19 DI SUMATERA BARAT'
            if text_title is None else text_title
        )
        ax.set_title(
            text_title,
            fontsize='x-large', fontweight='bold'
        )

    ax.set_xlabel('Tanggal', fontsize=14)
    ax.set_ylabel('$(\\pm)$ Spesimen', fontsize=14)

    if show_legend:
        if show_confirmed:
            handles1, labels1 = ax.get_legend_handles_labels()
            handles2, labels2 = ax2.get_legend_handles_labels()
            ax.legend((handles1 + handles2),
                      (labels1 + labels2), loc='upper left')
        else:
            ax.legend(loc='upper left')

    ax.set_xlim(min(x_pos)-1, max(x_pos)+1)
    ax.margins(x=0.01)
    ax.axhline(0, linestyle='--', color='grey')

    ax.grid(True, axis='both')
    ax.grid(axis='y', linestyle='-.')

    if show_bar is False:
        ax.set_yticks([], [])

    plt.tight_layout()
Ejemplo n.º 2
0
def plot_confirmed_growth(
        dataset, ax, mask=None, days=1,
        show_info=True, text_left=None, text_right=None,
        show_title=True, text_title=None,
        show_bar=True,
        show_numbers=True, show_total_numbers=True,
        show_legend=True,
        show_confirmed=False, show_confirmed_numbers=True):

    slice_data = (
        slice(None, None, days) if mask is None else slice(*mask, days)
    )

    data = dataset[slice_data]
    date_index = data.index
    date_ticks = date_index.strftime('%d\n%b').to_list()
    rows, _ = data.shape

    total_confirmed = data['konfirmasi'].values
    total_recovered = data['sembuh'].values
    total_deaths = data['meninggal'].values
    total_positive = total_confirmed - total_recovered - total_deaths

    x_pos = np.arange(0, rows*2, 2)
    x_pos_diff = x_pos[:-1] + 1

    # DIFF
    diff_confirmed = np.diff(total_confirmed)
    diff_deaths = np.diff(total_deaths)
    diff_recovered = np.diff(total_recovered)
    diff_positive = np.diff(total_positive)

    if show_bar:
        # POSITIVE
        ax.bar(
            x_pos_diff, _remove_negative(diff_positive),
            bottom=0, alpha=0.7,
            color='orange',  # edgecolor='black',
            label='Dalam Perawatan (Positif COVID-19)'
        )

        # RECOVERED
        ax.bar(
            x_pos_diff, _remove_negative(diff_recovered),
            bottom=np.absolute(diff_recovered)*-1, alpha=0.7,
            color='green',  # edgecolor='black',
            label='Sembuh (Positif COVID-19)'
        )

        # DEATHS
        ax.bar(
            x_pos_diff, _remove_negative(diff_deaths),
            color='red',  # edgecolor='black', alpha=0.7,
            bottom=(np.absolute(diff_recovered)*-1) + \
            (np.absolute(diff_deaths)*-1),
            label='Meninggal (Positif COVID-19)'
        )

    # ANNOTATION

    if show_numbers:
        for i, val in enumerate(diff_confirmed):

            # POSITIVE CASE
            text = (
                f'{diff_positive[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 50), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='black', family='monospace',
                bbox=dict(
                    facecolor='orange', alpha=1, boxstyle='square'
                )
            )

            # RECOVERED
            rd_pos = np.absolute(diff_recovered) + np.absolute(diff_deaths)
            rd_pos = -rd_pos

            text = (
                f'{diff_recovered[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 30), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='white', family='monospace',
                bbox=dict(
                    facecolor='green', alpha=1, boxstyle='square'
                )
            )

            # DEATHS
            text = (
                f'{diff_deaths[i]:+d}'
            )

            ax.annotate(
                text, (x_pos_diff[i], 0),
                xytext=(0, 10), textcoords='offset points',
                ha='center', va='bottom', size=10, fontweight='bold',
                color='white', family='monospace',
                bbox=dict(
                    facecolor='red', alpha=1, boxstyle='square'
                )
            )

            if show_total_numbers:
                total = np.sum(
                    (diff_deaths[i], diff_recovered[i], diff_positive[i]))
                text = (
                    f'{total:+d}'
                )

                ax.annotate(
                    text, (x_pos_diff[i], 0),
                    xytext=(0, 70), textcoords='offset points',
                    ha='center', va='bottom', size=12, fontweight='bold',
                    color='black',
                )

    if show_confirmed:
        ax2 = ax.twinx()
        ax2.plot(
            x_pos, total_confirmed,
            color='gray', linestyle='--',
            marker='o', markerfacecolor='gray',
            alpha=0.2
        )
        ax2.bar(
            x_pos, total_confirmed,
            alpha=0.3, color='grey',
            label='Kasus Konfirmasi'
        )
        ax2.set_ylabel('Kasus Konfirmasi', fontsize=14)

        if show_confirmed_numbers:
            for i, val in enumerate(total_confirmed):
                text = (
                    f'{val:d}'
                )

                ax2.annotate(
                    text, (x_pos[i], val),
                    xytext=(0, 10), textcoords='offset points',
                    ha='center', va='bottom', size=10, fontweight='bold',
                    color='black', alpha=0.3
                )

        so.align_yaxis_np((ax, ax2))
        ax2.set_yticklabels([f'{abs(x):.0f}' for x in ax2.get_yticks()])

    # INFO

    if show_info:
        text_right = (
            'Data: Situasi Terkini Perkembangan COVID-19 ' +
            '(infeksiemerging.kemkes.go.id)'
            if text_right is None else
            text_right
        )
        ax.text(
            1, -0.1, text_right,
            horizontalalignment='right',
            verticalalignment='top', style='normal', family='monospace',
            transform=ax.transAxes
        )

        text_left = (
            '' if text_left is None else
            text_left
        )

        ax.text(
            0, -0.1, text_left,
            horizontalalignment='left',
            verticalalignment='top', style='normal', family='serif',
            transform=ax.transAxes
        )

    # LEGEND
    ax.set_xticks(x_pos)
    ax.set_xticklabels(date_ticks, rotation=0)
    ax.set_yticklabels([f'{abs(x):.0f}' for x in ax.get_yticks()])

    if show_title:
        text_title = (
            'PERKEMBANGAN KASUS KONFIRMASI COVID-19 DI INDONESIA'
            if text_title is None else text_title
        )
        ax.set_title(
            text_title,
            fontsize='x-large', fontweight='bold'
        )

    ax.set_xlabel('Tanggal', fontsize=14)
    ax.set_ylabel('$(\\pm)$ Kasus', fontsize=14)

    if show_legend:
        if show_confirmed:
            handles1, labels1 = ax.get_legend_handles_labels()
            handles2, labels2 = ax2.get_legend_handles_labels()
            ax.legend((handles1 + handles2),
                      (labels1 + labels2), loc='upper left')
        else:
            ax.legend(loc='upper left')

    ax.set_xlim(min(x_pos)-1, max(x_pos)+1)
    ax.margins(x=0.01)
    ax.axhline(0, linestyle='--', color='grey')

    ax.grid(True, axis='both')
    ax.grid(axis='y', linestyle='-.')

    if show_bar is False:
        ax.set_yticks([], [])

    plt.tight_layout()